Dockerfile

FROM ubuntu:18.04

RUN apt-get update
RUN apt-get install -y python3-dev python3-pip python3-venv wget unzip 

ENV VIRTUAL_ENV=/opt/venv
RUN python3 -m venv $VIRTUAL_ENV
ENV PATH="$VIRTUAL_ENV/bin:$PATH"

RUN mkdir img
RUN mkdir notebooks
RUN mkdir src
RUN mkdir data
COPY img/ /img
COPY notebooks/ /notebooks
COPY src/ /src
COPY data/ /data
RUN cd /data/CORD-19-research-challenge && tar -xzvf CORD-19-research-challenge.tar.gz .
COPY LICENSE /LICENSE 
COPY README.md /README.md
COPY requirements.txt /requirements.txt

RUN pip3 install --upgrade pip 
RUN pip3 install -r requirements.txt
RUN pip3 install jupyter 

RUN python3 -c "import nltk; nltk.download('punkt')"
RUN python3 -c "import nltk; nltk.download('stopwords')"
RUN python3 -c "import nltk; nltk.download('wordnet')"

RUN wget https://storage.googleapis.com/bert_models/2018_10_18/uncased_L-12_H-768_A-12.zip
RUN unzip uncased_L-12_H-768_A-12.zip
RUN pip3 install bert-serving-server==1.10 --no-deps
RUN rm uncased_L-12_H-768_A-12.zip