pyproject.toml

[tool.poetry]
name = "pybarrnap"
version = "0.5.0"
description = "Python implementation of barrnap (Bacterial ribosomal RNA predictor)"
authors = ["moshi4"]
license = "GPL-3.0-only"
homepage = "https://github.com/moshi4/pybarrnap/"
repository = "https://github.com/moshi4/pybarrnap/"
readme = "README.md"
keywords = ["bioinformatics"]
classifiers = [
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]

[tool.pytest.ini_options]
minversion = "6.0"
addopts = "--cov=src --tb=long -vv --cov-report=xml --cov-report=term"
testpaths = ["tests"]

[tool.ruff]
src = ["src", "tests"]
line-length = 88

# Lint Rules: https://docs.astral.sh/ruff/rules/
[tool.ruff.lint]
select = [
    "F", # pyflakes
    "E", # pycodestyle (Error)
    "W", # pycodestyle (Warning)
    "I", # isort
    "D", # pydocstyle
]
ignore = [
    "D100", # Missing docstring in public module
    "D101", # Missing docstring in public class
    "D104", # Missing docstring in public package
    "D105", # Missing docstring in magic method
    "D205", # 1 blank line required between summary line and description
    "D400", # First line should end with a period
    "D401", # First line should be in imperative mood
    "D403", # First word of the first line should be properly capitalized
    "D415", # First line should end with a period, question mark, or exclamation point
]

[tool.ruff.lint.pydocstyle]
convention = "numpy"

[tool.poetry.scripts]
pybarrnap = "pybarrnap.scripts.pybarrnap:main"

[tool.poetry.dependencies]
python = "^3.8"
biopython = ">=1.80"
pyhmmer = ">=0.10.9"

[tool.poetry.group.dev.dependencies]
ruff = ">=0.1.6"
pre-commit = ">=3.5.0"
pytest = ">=7.1.2"
pytest-cov = ">=4.0.0"
ipykernel = ">=6.13.0"

[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"