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What version of EMX2 are you using (see footer)
v11.8.0
Describe the bug
The PALGA database consist of over 54 mln records, to upload all these data, the file is split up in 54 files with about 1 mln records. A python script is used to upload these files, however after uploading about 17 batches the script fails over and over with error: raise PyclientException(f"Error uploading file: {task.get('description')}") molgenis_emx2_pyclient.exceptions.PyclientException: Message: Error uploading file: Import fail ed: Transaction failed: Upsert into table 'Samples' failed: canceling statement due to timeout or by user request. in 317867ms
The script uses the schema/api/zip?async=true
Uploading the same zip-file via UI still works, but it's a bit undoable to do this for the over 30 remaining files.
What version of EMX2 are you using (see footer)
v11.8.0
Describe the bug
The PALGA database consist of over 54 mln records, to upload all these data, the file is split up in 54 files with about 1 mln records. A python script is used to upload these files, however after uploading about 17 batches the script fails over and over with error:
raise PyclientException(f"Error uploading file: {task.get('description')}") molgenis_emx2_pyclient.exceptions.PyclientException: Message: Error uploading file: Import fail ed: Transaction failed: Upsert into table 'Samples' failed: canceling statement due to timeout or by user request. in 317867ms
The script uses the schema/api/zip?async=true
Uploading the same zip-file via UI still works, but it's a bit undoable to do this for the over 30 remaining files.
To Reproduce
Steps to reproduce the behavior:
Expected behavior
Uploading more than 50 files with about 1mln records using the emx2-pyclient (api/zip) should work.
Additional context
Add any other context about the problem here.
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