From be62b05900070cacaf7f43d41c6a3e61bb0ddace Mon Sep 17 00:00:00 2001 From: moi-taiga Date: Thu, 7 Mar 2024 15:28:09 +0000 Subject: [PATCH] removing legacy code --- NAMESPACE | 2 -- man/ppr_timeline_plot.Rd | 17 +---------------- 2 files changed, 1 insertion(+), 18 deletions(-) diff --git a/NAMESPACE b/NAMESPACE index ba5b50b..515329b 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -8,7 +8,5 @@ export(ppr_output_plot) export(ppr_precision) export(ppr_predict_position) export(ppr_timeline_plot) -import(ggplot2) -import(ggrepel) importFrom(ggplot2,ggplot) importFrom(ggrepel,geom_text_repel) diff --git a/man/ppr_timeline_plot.Rd b/man/ppr_timeline_plot.Rd index 556907a..2b0cba6 100644 --- a/man/ppr_timeline_plot.Rd +++ b/man/ppr_timeline_plot.Rd @@ -1,16 +1,9 @@ % Generated by roxygen2: do not edit by hand -% Please edit documentation in R/ppr_racinglines_plot.R, R/ppr_timeline_plot.R +% Please edit documentation in R/ppr_timeline_plot.R \name{ppr_timeline_plot} \alias{ppr_timeline_plot} \title{Identify and Visualise each cells position.} \usage{ -ppr_timeline_plot( - reference.sg, - genomic_expression_traces = FALSE, - reduced_binary_counts_matrix = NULL, - cell_id = 1 -) - ppr_timeline_plot( reference.sg, genomic_expression_traces = FALSE, @@ -26,18 +19,10 @@ ppr_timeline_plot( \item{reduced_binary_counts_matrix}{a matrix of your samples binary gene expression.} \item{cell_id}{The index or name of the cell of interest} - -\item{lines}{logical, do you want to include lines to indicate the predicted position of a cell} - -\item{reference_reduced}{a matrix of your sample's binary gene expression.} } \value{ -Timeline plot of selected cell - Timeline plot of selected cell } \description{ -Produces a plot for each cell which helps visualize how PathPinPointR is predicting the cells position. - Produces a plot for each cell which helps visualize how GSS is predicting the cells position. }