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backtranseq.yaml
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!mobyle/program
name: backtranseq
title: backtranseq
description: Back-translate a protein sequence to a nucleotide sequence
inputs: !mobyle/inputparagraph
children:
- !mobyle/inputprogramparagraph
prompt: Input section
name: input
children:
- !mobyle/inputprogramparameter
prompt: Sequence option
format: ("", " -sequence=" + str(value))[value is not None]
simple: true
argpos: 1
mandatory: true
name: sequence
command: false
type: !mobyle/formattedtype
format_terms: ['EDAM_format:1927', 'EDAM_format:2200', 'EDAM_format:1935',
'EDAM_format:1936', 'EDAM_format:1948', 'EDAM_format:1948', 'EDAM_format:1957',
'EDAM_format:2188']
data_terms: ['EDAM_data:2976']
- !mobyle/inputprogramparameter
prompt: Cfile option
format: ("", " -cfile=" + str(value))[value is not None and value!=vdef]
argpos: 2
name: cfile
command: false
type: !mobyle/stringtype
default: Ehuman.cut
options:
- {label: Eacc.cut, value: Eacc.cut}
- {label: Eacica.cut, value: Eacica.cut}
- {label: Eadenovirus5.cut, value: Eadenovirus5.cut}
- {label: Eadenovirus7.cut, value: Eadenovirus7.cut}
- {label: Eagrtu.cut, value: Eagrtu.cut}
- {label: Eaidlav.cut, value: Eaidlav.cut}
- {label: Eanasp.cut, value: Eanasp.cut}
- {label: Eani.cut, value: Eani.cut}
- {label: Eani_h.cut, value: Eani_h.cut}
- {label: Eanidmit.cut, value: Eanidmit.cut}
- {label: Earath.cut, value: Earath.cut}
- {label: Easn.cut, value: Easn.cut}
- {label: Eath.cut, value: Eath.cut}
- {label: Eatu.cut, value: Eatu.cut}
- {label: Eavi.cut, value: Eavi.cut}
- {label: Eazovi.cut, value: Eazovi.cut}
- {label: Ebacme.cut, value: Ebacme.cut}
- {label: Ebacst.cut, value: Ebacst.cut}
- {label: Ebacsu.cut, value: Ebacsu.cut}
- {label: Ebacsu_high.cut, value: Ebacsu_high.cut}
- {label: Ebja.cut, value: Ebja.cut}
- {label: Ebly.cut, value: Ebly.cut}
- {label: Ebme.cut, value: Ebme.cut}
- {label: Ebmo.cut, value: Ebmo.cut}
- {label: Ebna.cut, value: Ebna.cut}
- {label: Ebommo.cut, value: Ebommo.cut}
- {label: Ebov.cut, value: Ebov.cut}
- {label: Ebovin.cut, value: Ebovin.cut}
- {label: Ebovsp.cut, value: Ebovsp.cut}
- {label: Ebpphx.cut, value: Ebpphx.cut}
- {label: Ebraja.cut, value: Ebraja.cut}
- {label: Ebrana.cut, value: Ebrana.cut}
- {label: Ebrare.cut, value: Ebrare.cut}
- {label: Ebst.cut, value: Ebst.cut}
- {label: Ebsu.cut, value: Ebsu.cut}
- {label: Ebsu_h.cut, value: Ebsu_h.cut}
- {label: Ecac.cut, value: Ecac.cut}
- {label: Ecaeel.cut, value: Ecaeel.cut}
- {label: Ecal.cut, value: Ecal.cut}
- {label: Ecanal.cut, value: Ecanal.cut}
- {label: Ecanfa.cut, value: Ecanfa.cut}
- {label: Ecaucr.cut, value: Ecaucr.cut}
- {label: Eccr.cut, value: Eccr.cut}
- {label: Ecel.cut, value: Ecel.cut}
- {label: Echi.cut, value: Echi.cut}
- {label: Echick.cut, value: Echick.cut}
- {label: Echicken.cut, value: Echicken.cut}
- {label: Echisp.cut, value: Echisp.cut}
- {label: Echk.cut, value: Echk.cut}
- {label: Echlre.cut, value: Echlre.cut}
- {label: Echltr.cut, value: Echltr.cut}
- {label: Echmp.cut, value: Echmp.cut}
- {label: Echnt.cut, value: Echnt.cut}
- {label: Echos.cut, value: Echos.cut}
- {label: Echzm.cut, value: Echzm.cut}
- {label: Echzmrubp.cut, value: Echzmrubp.cut}
- {label: Ecloab.cut, value: Ecloab.cut}
- {label: Ecpx.cut, value: Ecpx.cut}
- {label: Ecre.cut, value: Ecre.cut}
- {label: Ecrigr.cut, value: Ecrigr.cut}
- {label: Ecrisp.cut, value: Ecrisp.cut}
- {label: Ectr.cut, value: Ectr.cut}
- {label: Ecyapa.cut, value: Ecyapa.cut}
- {label: Edayhoff.cut, value: Edayhoff.cut}
- {label: Eddi.cut, value: Eddi.cut}
- {label: Eddi_h.cut, value: Eddi_h.cut}
- {label: Edicdi.cut, value: Edicdi.cut}
- {label: Edicdi_high.cut, value: Edicdi_high.cut}
- {label: Edog.cut, value: Edog.cut}
- {label: Edro.cut, value: Edro.cut}
- {label: Edro_h.cut, value: Edro_h.cut}
- {label: Edrome.cut, value: Edrome.cut}
- {label: Edrome_high.cut, value: Edrome_high.cut}
- {label: Edrosophila.cut, value: Edrosophila.cut}
- {label: Eeca.cut, value: Eeca.cut}
- {label: Eeco.cut, value: Eeco.cut}
- {label: Eeco_h.cut, value: Eeco_h.cut}
- {label: Eecoli.cut, value: Eecoli.cut}
- {label: Eecoli_high.cut, value: Eecoli_high.cut}
- {label: Eemeni.cut, value: Eemeni.cut}
- {label: Eemeni_high.cut, value: Eemeni_high.cut}
- {label: Eemeni_mit.cut, value: Eemeni_mit.cut}
- {label: Eerwct.cut, value: Eerwct.cut}
- {label: Ef1.cut, value: Ef1.cut}
- {label: Efish.cut, value: Efish.cut}
- {label: Efmdvpolyp.cut, value: Efmdvpolyp.cut}
- {label: Ehaein.cut, value: Ehaein.cut}
- {label: Ehalma.cut, value: Ehalma.cut}
- {label: Ehalsa.cut, value: Ehalsa.cut}
- {label: Eham.cut, value: Eham.cut}
- {label: Ehha.cut, value: Ehha.cut}
- {label: Ehin.cut, value: Ehin.cut}
- {label: Ehma.cut, value: Ehma.cut}
- {label: Ehorvu.cut, value: Ehorvu.cut}
- {label: Ehum.cut, value: Ehum.cut}
- {label: Ehuman.cut, value: Ehuman.cut}
- {label: Ekla.cut, value: Ekla.cut}
- {label: Eklepn.cut, value: Eklepn.cut}
- {label: Eklula.cut, value: Eklula.cut}
- {label: Ekpn.cut, value: Ekpn.cut}
- {label: Elacdl.cut, value: Elacdl.cut}
- {label: Ella.cut, value: Ella.cut}
- {label: Elyces.cut, value: Elyces.cut}
- {label: Emac.cut, value: Emac.cut}
- {label: Emacfa.cut, value: Emacfa.cut}
- {label: Emaize.cut, value: Emaize.cut}
- {label: Emaize_chl.cut, value: Emaize_chl.cut}
- {label: Emam_h.cut, value: Emam_h.cut}
- {label: Emammal_high.cut, value: Emammal_high.cut}
- {label: Emanse.cut, value: Emanse.cut}
- {label: Emarpo_chl.cut, value: Emarpo_chl.cut}
- {label: Emedsa.cut, value: Emedsa.cut}
- {label: Emetth.cut, value: Emetth.cut}
- {label: Emixlg.cut, value: Emixlg.cut}
- {label: Emouse.cut, value: Emouse.cut}
- {label: Emsa.cut, value: Emsa.cut}
- {label: Emse.cut, value: Emse.cut}
- {label: Emta.cut, value: Emta.cut}
- {label: Emtu.cut, value: Emtu.cut}
- {label: Emus.cut, value: Emus.cut}
- {label: Emussp.cut, value: Emussp.cut}
- {label: Emva.cut, value: Emva.cut}
- {label: Emyctu.cut, value: Emyctu.cut}
- {label: Emze.cut, value: Emze.cut}
- {label: Emzecp.cut, value: Emzecp.cut}
- {label: Encr.cut, value: Encr.cut}
- {label: Eneigo.cut, value: Eneigo.cut}
- {label: Eneu.cut, value: Eneu.cut}
- {label: Eneucr.cut, value: Eneucr.cut}
- {label: Engo.cut, value: Engo.cut}
- {label: Eoncmy.cut, value: Eoncmy.cut}
- {label: Eoncsp.cut, value: Eoncsp.cut}
- {label: Eorysa.cut, value: Eorysa.cut}
- {label: Eorysa_chl.cut, value: Eorysa_chl.cut}
- {label: Epae.cut, value: Epae.cut}
- {label: Epea.cut, value: Epea.cut}
- {label: Epet.cut, value: Epet.cut}
- {label: Epethy.cut, value: Epethy.cut}
- {label: Epfa.cut, value: Epfa.cut}
- {label: Ephavu.cut, value: Ephavu.cut}
- {label: Ephix174.cut, value: Ephix174.cut}
- {label: Ephv.cut, value: Ephv.cut}
- {label: Ephy.cut, value: Ephy.cut}
- {label: Epig.cut, value: Epig.cut}
- {label: Eplafa.cut, value: Eplafa.cut}
- {label: Epolyomaa2.cut, value: Epolyomaa2.cut}
- {label: Epombe.cut, value: Epombe.cut}
- {label: Epombecai.cut, value: Epombecai.cut}
- {label: Epot.cut, value: Epot.cut}
- {label: Eppu.cut, value: Eppu.cut}
- {label: Eprovu.cut, value: Eprovu.cut}
- {label: Epse.cut, value: Epse.cut}
- {label: Epseae.cut, value: Epseae.cut}
- {label: Epsepu.cut, value: Epsepu.cut}
- {label: Epsesm.cut, value: Epsesm.cut}
- {label: Epsy.cut, value: Epsy.cut}
- {label: Epvu.cut, value: Epvu.cut}
- {label: Erab.cut, value: Erab.cut}
- {label: Erabbit.cut, value: Erabbit.cut}
- {label: Erabit.cut, value: Erabit.cut}
- {label: Erabsp.cut, value: Erabsp.cut}
- {label: Erat.cut, value: Erat.cut}
- {label: Eratsp.cut, value: Eratsp.cut}
- {label: Erca.cut, value: Erca.cut}
- {label: Erhile.cut, value: Erhile.cut}
- {label: Erhime.cut, value: Erhime.cut}
- {label: Erhm.cut, value: Erhm.cut}
- {label: Erhoca.cut, value: Erhoca.cut}
- {label: Erhosh.cut, value: Erhosh.cut}
- {label: Eric.cut, value: Eric.cut}
- {label: Erle.cut, value: Erle.cut}
- {label: Erme.cut, value: Erme.cut}
- {label: Ersp.cut, value: Ersp.cut}
- {label: Esalsa.cut, value: Esalsa.cut}
- {label: Esalsp.cut, value: Esalsp.cut}
- {label: Esalty.cut, value: Esalty.cut}
- {label: Esau.cut, value: Esau.cut}
- {label: Eschma.cut, value: Eschma.cut}
- {label: Eschpo.cut, value: Eschpo.cut}
- {label: Eschpo_cai.cut, value: Eschpo_cai.cut}
- {label: Eschpo_high.cut, value: Eschpo_high.cut}
- {label: Esco.cut, value: Esco.cut}
- {label: Eserma.cut, value: Eserma.cut}
- {label: Esgi.cut, value: Esgi.cut}
- {label: Esheep.cut, value: Esheep.cut}
- {label: Eshp.cut, value: Eshp.cut}
- {label: Eshpsp.cut, value: Eshpsp.cut}
- {label: Esli.cut, value: Esli.cut}
- {label: Eslm.cut, value: Eslm.cut}
- {label: Esma.cut, value: Esma.cut}
- {label: Esmi.cut, value: Esmi.cut}
- {label: Esmu.cut, value: Esmu.cut}
- {label: Esoltu.cut, value: Esoltu.cut}
- {label: Esoy.cut, value: Esoy.cut}
- {label: Esoybn.cut, value: Esoybn.cut}
- {label: Espi.cut, value: Espi.cut}
- {label: Espiol.cut, value: Espiol.cut}
- {label: Espn.cut, value: Espn.cut}
- {label: Espo.cut, value: Espo.cut}
- {label: Espo_h.cut, value: Espo_h.cut}
- {label: Espu.cut, value: Espu.cut}
- {label: Esta.cut, value: Esta.cut}
- {label: Estaau.cut, value: Estaau.cut}
- {label: Estrco.cut, value: Estrco.cut}
- {label: Estrmu.cut, value: Estrmu.cut}
- {label: Estrpn.cut, value: Estrpn.cut}
- {label: Estrpu.cut, value: Estrpu.cut}
- {label: Esty.cut, value: Esty.cut}
- {label: Esus.cut, value: Esus.cut}
- {label: Esv40.cut, value: Esv40.cut}
- {label: Esyhsp.cut, value: Esyhsp.cut}
- {label: Esynco.cut, value: Esynco.cut}
- {label: Esyncy.cut, value: Esyncy.cut}
- {label: Esynsp.cut, value: Esynsp.cut}
- {label: Etbr.cut, value: Etbr.cut}
- {label: Etcr.cut, value: Etcr.cut}
- {label: Eter.cut, value: Eter.cut}
- {label: Etetsp.cut, value: Etetsp.cut}
- {label: Etetth.cut, value: Etetth.cut}
- {label: Etheth.cut, value: Etheth.cut}
- {label: Etob.cut, value: Etob.cut}
- {label: Etobac.cut, value: Etobac.cut}
- {label: Etobac_chl.cut, value: Etobac_chl.cut}
- {label: Etobcp.cut, value: Etobcp.cut}
- {label: Etom.cut, value: Etom.cut}
- {label: Etrb.cut, value: Etrb.cut}
- {label: Etrybr.cut, value: Etrybr.cut}
- {label: Etrycr.cut, value: Etrycr.cut}
- {label: Evco.cut, value: Evco.cut}
- {label: Evibch.cut, value: Evibch.cut}
- {label: Ewheat.cut, value: Ewheat.cut}
- {label: Ewht.cut, value: Ewht.cut}
- {label: Exel.cut, value: Exel.cut}
- {label: Exenla.cut, value: Exenla.cut}
- {label: Exenopus.cut, value: Exenopus.cut}
- {label: Eyeast.cut, value: Eyeast.cut}
- {label: Eyeast_cai.cut, value: Eyeast_cai.cut}
- {label: Eyeast_high.cut, value: Eyeast_high.cut}
- {label: Eyeast_mit.cut, value: Eyeast_mit.cut}
- {label: Eyeastcai.cut, value: Eyeastcai.cut}
- {label: Eyen.cut, value: Eyen.cut}
- {label: Eyeren.cut, value: Eyeren.cut}
- {label: Eyerpe.cut, value: Eyerpe.cut}
- {label: Eysc.cut, value: Eysc.cut}
- {label: Eysc_h.cut, value: Eysc_h.cut}
- {label: Eyscmt.cut, value: Eyscmt.cut}
- {label: Eysp.cut, value: Eysp.cut}
- {label: Ezebrafish.cut, value: Ezebrafish.cut}
- {label: Ezma.cut, value: Ezma.cut}
- !mobyle/inputprogramparagraph
prompt: Output section
name: output
children:
- !mobyle/inputprogramparameter {prompt: Name of the output file (outfile),
format: '("" , " -outfile=" + str(value))[value is not None]', argpos: 3,
name: outfile, command: false}
- !mobyle/inputprogramparameter {prompt: Choose the sequence output format,
format: '("", " -osformat=" + str(value))[value is not None and value!=vdef]',
argpos: 4, name: osformat_outfile, command: false}
- !mobyle/inputprogramparameter
prompt: Turn off any prompting
format: '" -auto -stdout"'
argpos: 5
name: auto
command: false
hidden: true
type: !mobyle/stringtype {}
outputs: !mobyle/outputparagraph
children:
- !mobyle/outputprogramparagraph
prompt: Output section
name: output
children:
- !mobyle/outputprogramparameter
prompt: Outfile_out option
filenames: outfile
name: outfile_out
type: !mobyle/formattedtype
data_terms: ['EDAM_data:2977']
- !mobyle/outputprogramparameter
prompt: Standard output
filenames: '"backtranseq.out"'
name: stdout
output_type: stdout
type: !mobyle/formattedtype
data_terms: ['EDAM_data:2048']
- !mobyle/outputprogramparameter
prompt: Standard error
filenames: '"backtranseq.err"'
name: stderr
type: !mobyle/formattedtype
data_terms: ['EDAM_data:2048']
operations: ['EDAM_operation:0371']
topics: ['EDAM_topic:0108']
documentation_links: ['http://bioweb2.pasteur.fr/docs/EMBOSS/backtranseq.html', 'http://emboss.sourceforge.net/docs/themes']
command: backtranseq
env: {}