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Missing
from mpl_toolkits.mplot3d import Axes3
in mne.viz._3d._plot_mpl_stc
mne.viz._3d._plot_mpl_stc
Generic to any example
data_path = somato.data_path() subject = '01' task = 'somato' ... stc_mne = apply_inverse(evoked, inv, lambda2, method='MNE', pick_ori="normal", return_residual=False, verbose=True) brain = stc_mne.plot(subjects_dir=subjects_dir, hemi='rh', surface='inflated', smoothing_steps='nearest', view_layout='vertical', backend='matplotlib')
A static plot using the matplotlib backend showing a 3D rendering of a surface.
matplotlib
Using control points [6.56993144e-11 7.80732925e-11 1.82440323e-10] --------------------------------------------------------------------------- KeyError Traceback (most recent call last) ~/miniconda3/envs/hnn_dev/lib/python3.7/site-packages/matplotlib/projections/__init__.py in get_projection_class(projection) 57 try: ---> 58 return projection_registry.get_projection_class(projection) 59 except KeyError: ~/miniconda3/envs/hnn_dev/lib/python3.7/site-packages/matplotlib/projections/__init__.py in get_projection_class(self, name) 24 """ ---> 25 return self._all_projection_types[name] 26 KeyError: '3d' During handling of the above exception, another exception occurred: ValueError Traceback (most recent call last) ~/src/git/hnn-core/examples/plot_simulate_somato.py in <module> ----> 1 stc_mne.plot(backend='matplotlib') ~/src/git/mne-python/mne/source_estimate.py in plot(self, subject, surface, hemi, colormap, time_label, smoothing_steps, transparent, alpha, time_viewer, subjects_dir, figure, views, colorbar, clim, cortex, size, background, foreground, initial_time, time_unit, backend, spacing, title, show_traces, src, volume_options, view_layout, add_data_kwargs, brain_kwargs, verbose) 662 src=src, volume_options=volume_options, view_layout=view_layout, 663 add_data_kwargs=add_data_kwargs, brain_kwargs=brain_kwargs, --> 664 verbose=verbose) 665 return brain 666 <decorator-gen-142> in plot_source_estimates(stc, subject, surface, hemi, colormap, time_label, smoothing_steps, transparent, alpha, time_viewer, subjects_dir, figure, views, colorbar, clim, cortex, size, background, foreground, initial_time, time_unit, backend, spacing, title, show_traces, src, volume_options, view_layout, add_data_kwargs, brain_kwargs, verbose) ~/src/git/mne-python/mne/viz/_3d.py in plot_source_estimates(stc, subject, surface, hemi, colormap, time_label, smoothing_steps, transparent, alpha, time_viewer, subjects_dir, figure, views, colorbar, clim, cortex, size, background, foreground, initial_time, time_unit, backend, spacing, title, show_traces, src, volume_options, view_layout, add_data_kwargs, brain_kwargs, verbose) 1826 transparent=transparent) 1827 if plot_mpl: -> 1828 return _plot_mpl_stc(stc, spacing=spacing, **kwargs) 1829 return _plot_stc( 1830 stc, overlay_alpha=alpha, brain_alpha=alpha, vector_alpha=alpha, ~/src/git/mne-python/mne/viz/_3d.py in _plot_mpl_stc(***failed resolving arguments***) 1524 time_label, times = _handle_time(time_label, time_unit, stc.times) 1525 fig = plt.figure(figsize=(6, 6)) if figure is None else figure -> 1526 ax = fig.gca(projection='3d') 1527 hemi_idx = 0 if hemi == 'lh' else 1 1528 surf = op.join(subjects_dir, subject, 'surf', '%s.%s' % (hemi, surface)) ~/miniconda3/envs/hnn_dev/lib/python3.7/site-packages/matplotlib/figure.py in gca(self, **kwargs) 1930 1931 # no axes found, so create one which spans the figure -> 1932 return self.add_subplot(1, 1, 1, **kwargs) 1933 1934 def sca(self, a): ~/miniconda3/envs/hnn_dev/lib/python3.7/site-packages/matplotlib/figure.py in add_subplot(self, *args, **kwargs) 1394 else: 1395 projection_class, kwargs, key = \ -> 1396 self._process_projection_requirements(*args, **kwargs) 1397 1398 # try to find the axes with this key in the stack ~/miniconda3/envs/hnn_dev/lib/python3.7/site-packages/matplotlib/figure.py in _process_projection_requirements(self, polar, projection, *args, **kwargs) 1118 1119 if isinstance(projection, str) or projection is None: -> 1120 projection_class = projections.get_projection_class(projection) 1121 elif hasattr(projection, '_as_mpl_axes'): 1122 projection_class, extra_kwargs = projection._as_mpl_axes() ~/miniconda3/envs/hnn_dev/lib/python3.7/site-packages/matplotlib/projections/__init__.py in get_projection_class(projection) 58 return projection_registry.get_projection_class(projection) 59 except KeyError: ---> 60 raise ValueError("Unknown projection %r" % projection) 61 62 ValueError: Unknown projection '3d'
PR will follow...
The text was updated successfully, but these errors were encountered:
_plot_mpl_stc
Axes3D
mpl
Successfully merging a pull request may close this issue.
Describe the bug
Missing
in
mne.viz._3d._plot_mpl_stc
Steps to reproduce
Generic to any example
Expected results
A static plot using the
matplotlib
backend showing a 3D rendering of a surface.Actual results
Additional information
PR will follow...
The text was updated successfully, but these errors were encountered: