You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
As I develop a Docker App using mne-bids-pipeline, I want a straightforward way to overwrite the bids_root and deriv_root values defined in the configuration file from the command line. This enhancement aims to simplify Docker volume mapping.
Currently, the option to override bids_root is already available (source), but there is no similar option for deriv_root.
I suggest adding a command-line option to the mne-bids-pipeline tool to allow users to specify the deriv_root directory. This behavior is similar to other BidsApps such as FMRIprep and MRIQC, where command line arguments overwrite configuration files.
If you are interested, I would be happy to contribute by taking care of the pull request.
The text was updated successfully, but these errors were encountered:
As I develop a Docker App using mne-bids-pipeline, I want a straightforward way to overwrite the bids_root and deriv_root values defined in the configuration file from the command line. This enhancement aims to simplify Docker volume mapping.
Currently, the option to override
bids_root
is already available (source), but there is no similar option forderiv_root
.I suggest adding a command-line option to the mne-bids-pipeline tool to allow users to specify the deriv_root directory. This behavior is similar to other BidsApps such as
FMRIprep
andMRIQC
, where command line arguments overwrite configuration files.If you are interested, I would be happy to contribute by taking care of the pull request.
The text was updated successfully, but these errors were encountered: