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Additional bonds #1

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SGrosse-Holz opened this issue Sep 9, 2019 · 1 comment
Open

Additional bonds #1

SGrosse-Holz opened this issue Sep 9, 2019 · 1 comment

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@SGrosse-Holz
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When plotting data with bonds shorter than 1 (absolute units), additional bonds are added in. (reported by Johannes, reproduced by me)
@SGrosse-Holz
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SGrosse-Holz commented Sep 10, 2019 •
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This is nglview... probably makes sense when visualizing actual molecules. Managed to reduce the issue a little bit by changing elements to helium (inert, small) and assigning (more or less) unique residue names, but it still happens for monomers that come close.

Added a scale option to xyz2nglview. If there are unwanted bonds, scale up by an appropriate factor.

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