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Load CRISPR perturbation datasets from scPerturb [Feature Request] #239
Comments
closed with #252 thanks @kexinhuang12345 ! |
Awesome! Thanks @kexinhuang12345 |
Hi @kexinhuang12345, as you know Currently, as I understand
Looking at the # of perturbations, it's not true for
Looking more carefully, I tried an empty folder and noticed for some reason this is downloading wrong file for
cc @amva13 |
Describe the bug
I'm interested in using single-cell CRISPR perturbation datasets such as
NormanWeissman2019
, andReplogleWeissman2022
datasets.Full list of scPerturb datasets
Questions
TDC
modules to load the scPerturb datasets in Python?Suggestion
For many reasons, it would be nice if the data loader function could enable users to load
h5ad
files asAnnData
objects (at least as an option).Originally posted in #236 (comment)
cc @amva13 @kexinhuang12345
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