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error during postanalysis individual #1873

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singhd6 opened this issue Dec 27, 2024 · 1 comment
Open

error during postanalysis individual #1873

singhd6 opened this issue Dec 27, 2024 · 1 comment

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@singhd6
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singhd6 commented Dec 27, 2024

I want to create heatmap for v gene usage, and for the same purpose i ran the postanalysis individual command as:
image
and i received the following error:
[singhd6@cc-dclrilog62 BCR_SEQUENCING_DS_REANALYSIS]$ mixcr postanalysis individual \

-Xmx50g
--default-downsampling count-read
--default-weight-function read
--only-productive
--drop-outliers
--metadata /mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/metadata.tsv
--force-overwrite
/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/individual_result.json.gz> --no-warnings
--verbose
/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/Test/A3-SUBJ018-IgM_S17_L001.clns
/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/individual_result.json.gz
App version: 4.7.0; built=Wed Aug 07 15:19:48 EDT 2024; rev=976ba14139; lib=repseqio.v5.1
Index 2 out of bounds for length 2

@mizraelson
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Was it solved? I see you have generated the plot in #1874

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