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FLAIR#2 Dataset and Datamodule Integration #2394

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FLAIR#2 Dataset and Datamodule Integration #2394

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b96c78b
docs: update recommended strategy for models with input and output (i…
Sep 13, 2024
0ce9b78
fix: grammar and formatting
MathiasBaumgartinger Sep 13, 2024
d48acd7
fix: grammar
MathiasBaumgartinger Sep 13, 2024
8bafb95
Merge branch 'microsoft:main' into main
MathiasBaumgartinger Oct 29, 2024
431220d
feat/WIP: draft for data.py generation file for FLAIR2 dataset
Oct 29, 2024
c9d989d
fix/WIP: fix formatting conventions and populate directories for each…
Oct 29, 2024
8c16f69
fix/WIP: use alternative hashing algorithm for reproducibility and co…
Oct 29, 2024
3f7fec7
feat/WIP: draft for datasets and docs
Oct 30, 2024
7c4eaf9
refactor/WIP: mark TODOS, add some documentation
Nov 3, 2024
21e5b08
feat/WIP: first draft for test FLAIR2
Nov 3, 2024
541630f
feat: add FLAIR2 import to __init.py__
Nov 3, 2024
4c1602f
feat/WIP: adds sentinel 2 loading/plotting logic
Nov 3, 2024
da45219
Merge branch 'microsoft:main' into main
MathiasBaumgartinger Nov 3, 2024
4bdbe9a
feat/WIP: update flair2 unit tests
Nov 4, 2024
8d6d687
fix&refactor/WIP: provide correct download address for toy dataset an…
Nov 4, 2024
563f7f4
fix/WIP: properly crop sentinel 2 data
Nov 4, 2024
6aeff90
fix/WIP: update cropping slices to match the actual size, fix `_verif…
Nov 5, 2024
592c336
feat/WIP: add test data creation of sentinel files
Nov 5, 2024
6d3a189
fix: update tests for FLAIR2 dataset
Nov 5, 2024
9930f6a
feat: add dummy data for flair2
Nov 5, 2024
ddef891
fix: properly expose FLAIR2 dataet in __init__.py
Nov 5, 2024
63ddc2f
docs: update documentation of flair2 dataset
Nov 5, 2024
ed5ed59
feat: proper integrity checks using correct md5s
Nov 5, 2024
a5af101
feat: expose an option for using/not using sentinel data
Nov 5, 2024
6040cd1
feat: add flair2 datamodule
Nov 5, 2024
2704b3f
Merge branch 'microsoft:main' into main
MathiasBaumgartinger Nov 5, 2024
96a2207
feat: new dummy data
Nov 5, 2024
6e3301e
refactor: syntax for mypy and ruff
Nov 5, 2024
09d5fd6
fix: bug where sentinel data could be of dimension 0 in first T dimen…
Nov 5, 2024
3393953
feat: save md5s of newly created zips to txt
Nov 5, 2024
9fc77bc
fix: update md5s for test data
Nov 5, 2024
d68c377
Merge branch 'main' of https://github.com/MathiasBaumgartinger/torchgeo
Nov 5, 2024
5cbee8d
refactor: remove accidentally pushed test scene
Nov 5, 2024
196b090
refactor: fix ordering for ruff
Nov 5, 2024
1fe9b08
perf: reduce dummy data size
Nov 21, 2024
ffecc2d
docs: replace wrong class link
Nov 21, 2024
e29ba3d
docs: update versionadded 0.7
Nov 21, 2024
0194550
docs: add versionadded
Nov 21, 2024
f64cc40
refactor: add colormap as class member and restructure code
Nov 21, 2024
971f63d
fix: add a `self.` for newly defined member variable (undefined varia…
Nov 21, 2024
f90dac1
feat: add data creation of toy set and change newly created data (x:y…
Nov 24, 2024
cb48b12
refactor: make FLAIR2Toy an own dataset that inherits from FLAIR2 as …
Nov 24, 2024
f3b185b
feat: apply new FLAIR2Toy in __init__ and tests
Nov 24, 2024
a12310b
docs: remove TODOs
Nov 24, 2024
34a552a
fix: use proper bands for rgb sentinel image
Nov 24, 2024
7ceb0fd
fix: naming inconsistencies in download url and file name
Nov 25, 2024
ffb7ed0
fix: format glob-string (i.e. `SEN_*{0}.npy`) to prevent continously …
Nov 25, 2024
9961a5d
refactor: different approach to loading sentinels more clearly seperated
Nov 25, 2024
53b098a
refactor: ruff/mypy errors
Nov 25, 2024
81dc7d2
fix: do not assume 1:1 mapping from sentinel to aerial
Nov 26, 2024
1c2ca19
docs: remove unwanted BOM from utf-8 encoding in csv file
Nov 27, 2024
86f2d2f
feat: expose toy dataset to flair module via flag
Nov 27, 2024
5673060
fix: expose FLAIR2Toy dataset under the `all` section in `__init__.py`
Nov 27, 2024
676db57
feat: update data generation for 1 to n mapping for sentinel to aeria…
Nov 28, 2024
efc4cfd
feat: 1:n mapping from sentinel to aerial in tests, also build in nam…
Nov 28, 2024
25b1060
Merge branch 'main' into main
MathiasBaumgartinger Nov 28, 2024
a33c143
fix: retry removing changes in the entire file
Nov 28, 2024
8779f89
refactor: sorting of __all__ tuple in ascending order (ruff)
Nov 28, 2024
68a29e6
refactor: ruff 0.8 formatting
Nov 28, 2024
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5 changes: 5 additions & 0 deletions docs/api/datamodules.rst
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Expand Up @@ -114,6 +114,11 @@ FireRisk

.. autoclass:: FireRiskDataModule

FLAIR2
^^^^^^

.. autoclass:: FLAIR2DataModule

GeoNRW
^^^^^^

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5 changes: 5 additions & 0 deletions docs/api/datasets.rst
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Expand Up @@ -297,6 +297,11 @@ FireRisk

.. autoclass:: FireRisk

FLAIR2
^^^^^^

.. autoclass:: FLAIR2

Forest Damage
^^^^^^^^^^^^^

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1 change: 1 addition & 0 deletions docs/api/datasets/non_geo_datasets.csv
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Expand Up @@ -18,6 +18,7 @@ Dataset,Task,Source,License,# Samples,# Classes,Size (px),Resolution (m),Bands
`FAIR1M`_,OD,Gaofen/Google Earth,"CC-BY-NC-SA-3.0","15,000",37,"1,024x1,024",0.3--0.8,RGB
`Fields Of The World`_,"S,I",Sentinel-2,"Various","70795","2,3",256x256,10,MSI
`FireRisk`_,C,NAIP Aerial,"CC-BY-NC-4.0","91,872",7,"320x320",1,RGB
`FLAIR2`_,S,"IGN, Sentinel-2",OPENLICENSE-2.0,7741,13--18,512x512,0.2--20,"RGB+NIR+NDSM, MSI",
`Forest Damage`_,OD,Drone imagery,"CDLA-Permissive-1.0","1,543",4,"1,500x1,500",,RGB
`GeoNRW`_,S,Aerial,"CC-BY-4.0","7,783",11,"1,000x1,000",1,"RGB, DEM"
`GID-15`_,S,Gaofen-2,-,150,15,"6,800x7,200",3,RGB
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{"IMG_273729.tif": [16, 16], "IMG_660532.tif": [16, 16], "IMG_222419.tif": [16, 16], "IMG_291261.tif": [16, 16], "IMG_130148.tif": [16, 16], "IMG_866506.tif": [16, 16], "IMG_069499.tif": [16, 16], "IMG_379153.tif": [16, 16], "IMG_758165.tif": [16, 16], "IMG_446805.tif": [16, 16], "IMG_821871.tif": [16, 16], "IMG_463424.tif": [16, 16], "IMG_881682.tif": [16, 16], "IMG_966251.tif": [16, 16], "IMG_574217.tif": [16, 16], "IMG_658262.tif": [16, 16], "IMG_516804.tif": [16, 16], "IMG_359115.tif": [16, 16], "IMG_775995.tif": [16, 16], "IMG_145759.tif": [16, 16], "IMG_545250.tif": [16, 16], "IMG_492040.tif": [16, 16], "IMG_320394.tif": [16, 16], "IMG_703337.tif": [16, 16], "IMG_312966.tif": [16, 16], "IMG_215360.tif": [16, 16], "IMG_065691.tif": [16, 16], "IMG_647808.tif": [16, 16], "IMG_960096.tif": [16, 16], "IMG_863235.tif": [16, 16]}
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{"IMG_273729.tif": [16, 16], "IMG_660532.tif": [16, 16], "IMG_222419.tif": [16, 16], "IMG_291261.tif": [16, 16], "IMG_130148.tif": [16, 16], "IMG_866506.tif": [16, 16], "IMG_069499.tif": [16, 16], "IMG_379153.tif": [16, 16], "IMG_758165.tif": [16, 16], "IMG_446805.tif": [16, 16], "IMG_821871.tif": [16, 16], "IMG_463424.tif": [16, 16], "IMG_881682.tif": [16, 16], "IMG_966251.tif": [16, 16], "IMG_574217.tif": [16, 16], "IMG_658262.tif": [16, 16], "IMG_516804.tif": [16, 16], "IMG_359115.tif": [16, 16], "IMG_775995.tif": [16, 16], "IMG_145759.tif": [16, 16], "IMG_545250.tif": [16, 16], "IMG_492040.tif": [16, 16], "IMG_320394.tif": [16, 16], "IMG_703337.tif": [16, 16], "IMG_312966.tif": [16, 16], "IMG_215360.tif": [16, 16], "IMG_065691.tif": [16, 16], "IMG_647808.tif": [16, 16], "IMG_960096.tif": [16, 16], "IMG_863235.tif": [16, 16]}
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/home/mathias/Dev/forks/torchgeo/tests/data/flair2/FLAIR2/flair_2_labels_test.zip: b13c4a3cb7ebb5cadddc36474bb386f9
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maybe remove the personal directory from this text file.

/home/mathias/Dev/forks/torchgeo/tests/data/flair2/FLAIR2/flair_2_toy_dataset.zip: 850736cd9c092d4ec3445a29da01f742
/home/mathias/Dev/forks/torchgeo/tests/data/flair2/FLAIR2/flair_2_sen_test.zip: 855540b98f86ab8acec87f9aa1a95e0e
/home/mathias/Dev/forks/torchgeo/tests/data/flair2/FLAIR2/flair_2_aerial_test.zip: f60ab0671fc02b6c3e490c39b0a22ed0
/home/mathias/Dev/forks/torchgeo/tests/data/flair2/FLAIR2/flair_sen_train.zip: b719b0859ab1eb7ae0fae73b90fbad80
/home/mathias/Dev/forks/torchgeo/tests/data/flair2/FLAIR2/flair_aerial_train.zip: 4c7541ec00136e9ee42592931f90f395
/home/mathias/Dev/forks/torchgeo/tests/data/flair2/FLAIR2/flair_labels_train.zip: b109583c8745342714a817252aeb7f84
/home/mathias/Dev/forks/torchgeo/tests/data/flair2/FLAIR2/flair_2_centroids_sp_to_patch.zip: 82010d9917c8bce52e18d82dac292b5b
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