From e7678b7836a89c28ec13593656384b4bf2e4bdf1 Mon Sep 17 00:00:00 2001 From: Patrick Kalita Date: Mon, 13 Mar 2023 16:01:57 -0700 Subject: [PATCH] Ensure each example is a separate instance of `examples` slot; deduplicate comments --- .../from_schema_sheets.lint_report.txt | 2 +- ...heets-for-nmdc-submission-schema_slots.csv | 10 +- .../yaml_out/from_schema_sheets.yaml | 17 +- .../yaml_out/from_schema_sheets.yaml.raw | 17 +- ...c-submission-schema_modifications_long.tsv | 23 +- .../with_modifications.lint_report.txt | 710 ++-- .../with_shuttles.lint_report.txt | 710 ++-- .../yaml_out/with_modifications.yaml | 2995 +++++++++-------- .../yaml_out/with_modifications.yaml.raw | 2995 +++++++++-------- .../yaml_out/with_shuttles.yaml | 2693 +++++++-------- .../yaml_out/with_shuttles.yaml.raw | 2693 +++++++-------- .../schema/submission_schema.yaml | 2888 ++++++++-------- 12 files changed, 8053 insertions(+), 7700 deletions(-) diff --git a/schema_sheets/from_schema_sheets.lint_report.txt b/schema_sheets/from_schema_sheets.lint_report.txt index c284a85e..dcda3416 100644 --- a/schema_sheets/from_schema_sheets.lint_report.txt +++ b/schema_sheets/from_schema_sheets.lint_report.txt @@ -1,4 +1,4 @@ -/Users/MAM/Documents/gitrepos/submission-schema/schema_sheets/yaml_out/from_schema_sheets.yaml +/Users/PAKalita/Work/submission-schema/schema_sheets/yaml_out/from_schema_sheets.yaml warning Permissible value of Enum 'BioticRelationshipEnum' has name 'free living' (standard_naming) warning Permissible value of Enum 'BioticRelationshipEnum' has name 'natural organic matter' (standard_naming) warning Permissible value of Enum 'DnaSampleFormatEnum' has name '10 mM Tris-HCl' (standard_naming) diff --git a/schema_sheets/tsv_in/sheets-for-nmdc-submission-schema_slots.csv b/schema_sheets/tsv_in/sheets-for-nmdc-submission-schema_slots.csv index 6cc18a81..ad26fbed 100644 --- a/schema_sheets/tsv_in/sheets-for-nmdc-submission-schema_slots.csv +++ b/schema_sheets/tsv_in/sheets-for-nmdc-submission-schema_slots.csv @@ -24,9 +24,9 @@ dnase_rna placeholder Note DNAse treatment is required for all RNA samples. DNas rna_cont_type Tube or plate (96-well) RNA container type 10 jgi_metatranscriptomics_section RnaContTypeEnum plate TRUE rna_sample_format Solution in which the RNA sample has been suspended RNA sample format 12 jgi_metatranscriptomics_section RnaSampleFormatEnum Water TRUE sample_type Type of sample being submitted This can vary from 'environmental package' if the sample is an extraction. sample type 2 emsl_section SampleTypeEnum water extracted soil TRUE -collection_date_inc Date the incubation was harvested/collected/ended. Only relevant for incubation samples. Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable. incubation collection date 2 mixs_inspired_section MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only 2021-04-15, 2021-04 and 2021 are all acceptable. TRUE {date, arbitrary precision} -collection_time The time of sampling, either as an instance (single point) or interval. Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter collection time, GMT 1 mixs_inspired_section MIxS collection_date accepts (truncated) ISO8601. DH taking seconds optional time only 13:33 or 13:33:55 TRUE {time, seconds optional} -collection_time_inc Time the incubation was harvested/collected/ended. Only relevant for incubation samples. Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter incubation collection time, GMT 3 mixs_inspired_section MIxS collection_date accepts (truncated) ISO8601. DH taking seconds optional time only 13:33 or 13:33:55 TRUE {time, seconds optional} +collection_date_inc Date the incubation was harvested/collected/ended. Only relevant for incubation samples. Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable. incubation collection date 2 mixs_inspired_section MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only 2021-04-15|2021-04|2021 TRUE {date, arbitrary precision} +collection_time The time of sampling, either as an instance (single point) or interval. Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter collection time, GMT 1 mixs_inspired_section MIxS collection_date accepts (truncated) ISO8601. DH taking seconds optional time only 13:33|13:33:55 TRUE {time, seconds optional} +collection_time_inc Time the incubation was harvested/collected/ended. Only relevant for incubation samples. Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter incubation collection time, GMT 3 mixs_inspired_section MIxS collection_date accepts (truncated) ISO8601. DH taking seconds optional time only 13:33|13:33:55 TRUE {time, seconds optional} dh_section dh_section grouping slot dna_absorb1 260/280 measurement of DNA sample purity Recommended value is between 1 and 3. DNA absorbance 260/280 7 jgi_metagenomics_section 2.02 TRUE {float} dna_absorb2 260/230 measurement of DNA sample purity Recommended value is between 1 and 3. DNA absorbance 260/230 8 jgi_metagenomics_section 2.02 TRUE {float} @@ -86,8 +86,8 @@ rna_volume placeholder Units must be in uL. Enter the numerical part only. Value sample_id_section placeholder dh_section 1 sample_link A unique identifier to assign parent-child, subsample, or sibling samples. This is relevant when a sample or other material was used to generate the new sample. This field allows multiple entries separated by ; (Examples: Soil collected from the field will link with the soil used in an incubation. The soil a plant was grown in links to the plant sample. An original culture sample was transferred to a new vial and generated a new sample) sample linkage 5 sample_id_section IGSN:DSJ0284 TRUE {text}:{text} sample_shipped The total amount or size (volume (ml), mass (g) or area (m2) ) of sample sent to EMSL sample shipped amount 3 emsl_section TRUE {float} {unit} -start_date_inc Date the incubation was started. Only relevant for incubation samples. Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable. incubation start date 4 mixs_inspired_section MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only 2021-04-15, 2021-04 and 2021 are all acceptable. TRUE {date, arbitrary precision} -start_time_inc Time the incubation was started. Only relevant for incubation samples. Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter incubation start time, GMT 5 mixs_inspired_section MIxS collection_date accepts (truncated) ISO8601. DH taking seconds optional time only 13:33 or 13:33:55 TRUE {time, seconds optional} +start_date_inc Date the incubation was started. Only relevant for incubation samples. Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable. incubation start date 4 mixs_inspired_section MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only 2021-04-15|2021-04|2021 TRUE {date, arbitrary precision} +start_time_inc Time the incubation was started. Only relevant for incubation samples. Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter incubation start time, GMT 5 mixs_inspired_section MIxS collection_date accepts (truncated) ISO8601. DH taking seconds optional time only 13:33|13:33:55 TRUE {time, seconds optional} technical_reps If sending multiple technical replicates of the same sample, indicate how many replicates are being sent number technical replicate 5 emsl_section TRUE {integer} type required by AttributeValue dna_cont_well placeholder Required when 'plate' is selected for container type. Corner wells must be blank. For partial plates, fill by columns. Leave blank if the sample will be shipped in a tube. DNA well number 11 jgi_metagenomics_section B2 TRUE {96 well plate pos} diff --git a/schema_sheets/yaml_out/from_schema_sheets.yaml b/schema_sheets/yaml_out/from_schema_sheets.yaml index 0dd78aad..77838f8f 100644 --- a/schema_sheets/yaml_out/from_schema_sheets.yaml +++ b/schema_sheets/yaml_out/from_schema_sheets.yaml @@ -1204,7 +1204,9 @@ slots: - Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable. examples: - - value: 2021-04-15, 2021-04 and 2021 are all acceptable. + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://example.com/nmdc_submission_schema rank: 2 string_serialization: '{date, arbitrary precision}' @@ -1220,7 +1222,8 @@ slots: comments: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema rank: 1 string_serialization: '{time, seconds optional}' @@ -1237,7 +1240,8 @@ slots: comments: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema rank: 3 string_serialization: '{time, seconds optional}' @@ -2108,7 +2112,9 @@ slots: - Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable. examples: - - value: 2021-04-15, 2021-04 and 2021 are all acceptable. + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://example.com/nmdc_submission_schema rank: 4 string_serialization: '{date, arbitrary precision}' @@ -2124,7 +2130,8 @@ slots: comments: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema rank: 5 string_serialization: '{time, seconds optional}' diff --git a/schema_sheets/yaml_out/from_schema_sheets.yaml.raw b/schema_sheets/yaml_out/from_schema_sheets.yaml.raw index 2839075c..8ae124e9 100644 --- a/schema_sheets/yaml_out/from_schema_sheets.yaml.raw +++ b/schema_sheets/yaml_out/from_schema_sheets.yaml.raw @@ -946,7 +946,9 @@ slots: description: Date the incubation was harvested/collected/ended. Only relevant for incubation samples. examples: - - value: 2021-04-15, 2021-04 and 2021 are all acceptable. + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://example.com/nmdc_submission_schema notes: - MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only @@ -960,7 +962,8 @@ slots: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' description: The time of sampling, either as an instance (single point) or interval. examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema notes: - MIxS collection_date accepts (truncated) ISO8601. DH taking seconds optional @@ -976,7 +979,8 @@ slots: description: Time the incubation was harvested/collected/ended. Only relevant for incubation samples. examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema notes: - MIxS collection_date accepts (truncated) ISO8601. DH taking seconds optional @@ -1770,7 +1774,9 @@ slots: are all acceptable. description: Date the incubation was started. Only relevant for incubation samples. examples: - - value: 2021-04-15, 2021-04 and 2021 are all acceptable. + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://example.com/nmdc_submission_schema notes: - MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only @@ -1784,7 +1790,8 @@ slots: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' description: Time the incubation was started. Only relevant for incubation samples. examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema notes: - MIxS collection_date accepts (truncated) ISO8601. DH taking seconds optional diff --git a/sheets_and_friends/tsv_in/sheets-for-nmdc-submission-schema_modifications_long.tsv b/sheets_and_friends/tsv_in/sheets-for-nmdc-submission-schema_modifications_long.tsv index 6fd1a504..07e450fb 100644 --- a/sheets_and_friends/tsv_in/sheets-for-nmdc-submission-schema_modifications_long.tsv +++ b/sheets_and_friends/tsv_in/sheets-for-nmdc-submission-schema_modifications_long.tsv @@ -1,24 +1,10 @@ class slot action target path LinkML implementation notes value -SoilInterface al_sat add_attribute comments Aluminum saturation is the percentage of the CEC occupies by aluminum. Like all cations, aluminum held by the cation exchange complex is in equilibrium with aluminum in the soil solution. -SoilInterface al_sat_meth add_attribute comments Required when aluminum saturation is provided. -SoilInterface cur_vegetation add_attribute comments Values provided here can be specific species of vegetation or vegetation regions|See for vegetation regions- https://education.nationalgeographic.org/resource/vegetation-region -SoilInterface cur_vegetation_meth add_attribute comments Required when current vegetation is provided. AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface depth add_attribute comments All depths must be reported in meters. Provide the numerical portion only. -AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface elev add_attribute comments All elevations must be reported in meters. Provide the numerical portion only. -SoilInterface fire add_attribute comments Provide the date the fire occurred. If extended burning occurred provide the date range. -SoilInterface flooding add_attribute comments Provide the date the flood occurred. If extended flooding occurred provide the date range. -SoilInterface heavy_metals add_attribute comments For multiple heavy metals and concentrations, separate by ; -SoilInterface heavy_metals_meth add_attribute comments Required when heavy metals are provided|If different methods are used for multiple metals, indicate the metal and method. Separate metals by ; -BiofilmInterface|HcrCoresInterface|HcrFluidsSwabsInterface|MiscEnvsInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface ph_meth add_attribute comments This can include a link to the instrument used or a citation for the method. AirInterface|BiofilmInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface samp_collec_device add_attribute comments Report dimensions and details when applicable AirInterface|BiofilmInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface samp_collec_method add_attribute comments This can be a citation or description DhMultiviewCommonColumns samp_name add_attribute comments It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. AirInterface|BiofilmInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface samp_size add_attribute comments This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. -SoilInterface season_precpt add_attribute comments Seasons are defined as spring (March, April, May), summer (June, July, August), autumn (September, October, November) and winter (December, January, February). -SoilInterface sieving add_attribute comments Describe how samples were composited or sieved.|Use 'sample link' to indicate which samples were combined. -SoilInterface slope_aspect add_attribute comments Aspect is the orientation of slope, measured clockwise in degrees from 0 to 360, where 0 is north-facing, 90 is east-facing, 180 is south-facing, and 270 is west-facing. DhMultiviewCommonColumns source_mat_id add_attribute comments Identifiers must be prefixed. Possible FAIR prefixes are IGSNs (http://www.geosamples.org/getigsn), NCBI biosample accession numbers, ARK identifiers (https://arks.org/). These IDs enable linking to derived analytes and subsamples. If you have not assigned FAIR identifiers to your samples, you can generate UUIDs (https://www.uuidgenerator.net/). -SoilInterface water_cont_soil_meth add_attribute comments Required if providing water content SoilInterface al_sat replace_attribute description The relative abundance of aluminum in the sample SoilInterface al_sat_meth replace_attribute description Reference or method used in determining Aluminum saturation AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface collection_date replace_attribute description The date of sampling @@ -36,10 +22,10 @@ SoilInterface store_cond replace_attribute description Explain how the soil sa SoilInterface al_sat overwrite_examples examples 0.27 SoilInterface al_sat_meth overwrite_examples examples https://doi.org/10.1371/journal.pone.0176357 SoilInterface annual_precpt overwrite_examples examples 8.94 inch -AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface collection_date overwrite_examples examples 2021-04-15; 2021-04; 2021 +AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface collection_date overwrite_examples examples 2021-04-15|2021-04|2021 SoilInterface cur_vegetation overwrite_examples examples deciduous forest|forest|Bauhinia variegata SoilInterface cur_vegetation_meth overwrite_examples examples https://doi.org/10.1111/j.1654-109X.2011.01154.x -AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface depth overwrite_examples examples 0-0.1; 1 +AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface depth overwrite_examples examples 0-0.1|1 AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface elev overwrite_examples examples 225 | 0 | 1250 SoilInterface extreme_event overwrite_examples examples 1980-05-18, volcanic eruption SoilInterface fire overwrite_examples examples 1871-10-10|1871-10-01 to 1871-10-31 @@ -47,10 +33,13 @@ SoilInterface flooding overwrite_examples examples 1927-04-15|1927-04 to 1927- PlantAssociatedInterface|SoilInterface gaseous_environment overwrite_examples examples CO2; 500ppm above ambient; constant|nitric oxide;0.5 micromole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M SoilInterface heavy_metals overwrite_examples examples mercury 0.09 micrograms per gram|mercury 0.09 ug/g; chromium 0.03 ug/g SoilInterface heavy_metals_meth overwrite_examples examples https://doi.org/10.3390/ijms9040434|mercury https://doi.org/10.1007/BF01056090; chromium https://doi.org/10.1007/s00216-006-0322-8 +AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface env_local_scale overwrite_examples examples canopy [ENVO:00000047]|herb and fern layer [ENVO:01000337]|litter layer [ENVO:01000338]|understory [01000335]|shrub layer [ENVO:01000336] +AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface env_medium overwrite_examples examples soil [ENVO:00001998] BiofilmInterface|HcrCoresInterface|HcrFluidsSwabsInterface|MiscEnvsInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface ph_meth overwrite_examples examples https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB|https://doi.org/10.2136/sssabookser5.3.c16 SoilInterface salinity_meth overwrite_examples examples https://doi.org/10.1007/978-1-61779-986-0_28 +AirInterface|BiofilmInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface samp_mat_process overwrite_examples examples filtering of seawater|storing samples in ethanol DhMultiviewCommonColumns samp_name overwrite_examples examples Rock core CB1178(5-6) from NSW -AirInterface|BiofilmInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface samp_size overwrite_examples examples 5 grams; 10 mL +AirInterface|BiofilmInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface samp_size overwrite_examples examples 5 grams|10 mL AirInterface|BiofilmInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface samp_store_temp overwrite_examples examples -80 Celsius SoilInterface season_precpt overwrite_examples examples 0.4 inch|10.16 mm SoilInterface sieving overwrite_examples examples combined 2 cores | 4mm sieved|4 mm sieved and homogenized|50 g | 5 cores | 2 mm sieved diff --git a/sheets_and_friends/with_modifications.lint_report.txt b/sheets_and_friends/with_modifications.lint_report.txt index d70030df..b8b6f923 100644 --- a/sheets_and_friends/with_modifications.lint_report.txt +++ b/sheets_and_friends/with_modifications.lint_report.txt @@ -1,111 +1,111 @@ -/Users/MAM/Documents/gitrepos/submission-schema/sheets_and_friends/yaml_out/with_modifications.yaml +/Users/PAKalita/Work/submission-schema/sheets_and_friends/yaml_out/with_modifications.yaml warning Class 'DhMultiviewCommonColumns' does not have recommended slot 'description' (recommended) warning Class 'OntologyClass' does not have recommended slot 'description' (recommended) - warning Slot 'was_generated_by' does not have recommended slot 'description' (recommended) - warning Slot 'started_at_time' does not have recommended slot 'description' (recommended) - warning Slot 'nucleic acid sequence source field' does not have recommended slot 'description' (recommended) - warning Slot 'ended_at_time' does not have recommended slot 'description' (recommended) warning Slot 'acted_on_behalf_of' does not have recommended slot 'description' (recommended) + warning Slot 'nucleic acid sequence source field' does not have recommended slot 'description' (recommended) warning Slot 'was_associated_with' does not have recommended slot 'description' (recommended) - warning Slot 'was_informed_by' does not have recommended slot 'description' (recommended) warning Slot 'used' does not have recommended slot 'description' (recommended) - warning Enum 'floor_cond_enum' does not have recommended slot 'description' (recommended) - warning Enum 'occup_document_enum' does not have recommended slot 'description' (recommended) - warning Enum 'heat_deliv_loc_enum' does not have recommended slot 'description' (recommended) - warning Enum 'gender_restroom_enum' does not have recommended slot 'description' (recommended) + warning Slot 'ended_at_time' does not have recommended slot 'description' (recommended) + warning Slot 'was_generated_by' does not have recommended slot 'description' (recommended) + warning Slot 'started_at_time' does not have recommended slot 'description' (recommended) + warning Slot 'was_informed_by' does not have recommended slot 'description' (recommended) + warning Enum 'ceil_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'floor_water_mold_enum' does not have recommended slot 'description' (recommended) + warning Enum 'window_vert_pos_enum' does not have recommended slot 'description' (recommended) + warning Enum 'specific_enum' does not have recommended slot 'description' (recommended) + warning Enum 'ceil_finish_mat_enum' does not have recommended slot 'description' (recommended) + warning Enum 'indoor_surf_enum' does not have recommended slot 'description' (recommended) + warning Enum 'wall_loc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'window_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'samp_floor_enum' does not have recommended slot 'description' (recommended) + warning Enum 'filter_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'window_cover_enum' does not have recommended slot 'description' (recommended) + warning Enum 'room_condt_enum' does not have recommended slot 'description' (recommended) + warning Enum 'room_connected_enum' does not have recommended slot 'description' (recommended) warning Enum 'build_docs_enum' does not have recommended slot 'description' (recommended) - warning Enum 'door_type_wood_enum' does not have recommended slot 'description' (recommended) - warning Enum 'surf_material_enum' does not have recommended slot 'description' (recommended) - warning Enum 'furniture_enum' does not have recommended slot 'description' (recommended) + warning Enum 'indoor_space_enum' does not have recommended slot 'description' (recommended) + warning Enum 'window_loc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'ext_wall_orient_enum' does not have recommended slot 'description' (recommended) warning Enum 'drawings_enum' does not have recommended slot 'description' (recommended) warning Enum 'samp_weather_enum' does not have recommended slot 'description' (recommended) - warning Enum 'weekday_enum' does not have recommended slot 'description' (recommended) - warning Enum 'window_mat_enum' does not have recommended slot 'description' (recommended) - warning Enum 'samp_floor_enum' does not have recommended slot 'description' (recommended) - warning Enum 'door_type_metal_enum' does not have recommended slot 'description' (recommended) - warning Enum 'ceil_finish_mat_enum' does not have recommended slot 'description' (recommended) - warning Enum 'vis_media_enum' does not have recommended slot 'description' (recommended) - warning Enum 'room_loc_enum' does not have recommended slot 'description' (recommended) - warning Enum 'wall_const_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'surf_air_cont_enum' does not have recommended slot 'description' (recommended) - warning Enum 'room_condt_enum' does not have recommended slot 'description' (recommended) - warning Enum 'door_loc_enum' does not have recommended slot 'description' (recommended) - warning Enum 'specific_enum' does not have recommended slot 'description' (recommended) - warning Enum 'substructure_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'int_wall_cond_enum' does not have recommended slot 'description' (recommended) - warning Enum 'shading_device_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'window_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'door_cond_enum' does not have recommended slot 'description' (recommended) + warning Enum 'rel_samp_loc_enum' does not have recommended slot 'description' (recommended) warning Enum 'door_mat_enum' does not have recommended slot 'description' (recommended) - warning Enum 'light_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'room_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'wall_finish_mat_enum' does not have recommended slot 'description' (recommended) warning Enum 'quad_pos_enum' does not have recommended slot 'description' (recommended) - warning Enum 'indoor_space_enum' does not have recommended slot 'description' (recommended) - warning Enum 'season_use_enum' does not have recommended slot 'description' (recommended) - warning Enum 'floor_struc_enum' does not have recommended slot 'description' (recommended) - warning Enum 'train_stat_loc_enum' does not have recommended slot 'description' (recommended) - warning Enum 'ext_window_orient_enum' does not have recommended slot 'description' (recommended) warning Enum 'build_occup_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'rel_samp_loc_enum' does not have recommended slot 'description' (recommended) - warning Enum 'window_vert_pos_enum' does not have recommended slot 'description' (recommended) - warning Enum 'wall_loc_enum' does not have recommended slot 'description' (recommended) - warning Enum 'indoor_surf_enum' does not have recommended slot 'description' (recommended) - warning Enum 'train_stop_loc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'door_direct_enum' does not have recommended slot 'description' (recommended) + warning Enum 'ext_window_orient_enum' does not have recommended slot 'description' (recommended) + warning Enum 'vis_media_enum' does not have recommended slot 'description' (recommended) + warning Enum 'arch_struc_enum' does not have recommended slot 'description' (recommended) warning Enum 'water_feat_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'int_wall_cond_enum' does not have recommended slot 'description' (recommended) + warning Enum 'door_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'floor_struc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'window_cond_enum' does not have recommended slot 'description' (recommended) warning Enum 'wall_texture_enum' does not have recommended slot 'description' (recommended) + warning Enum 'door_cond_enum' does not have recommended slot 'description' (recommended) + warning Enum 'floor_cond_enum' does not have recommended slot 'description' (recommended) + warning Enum 'occup_document_enum' does not have recommended slot 'description' (recommended) + warning Enum 'ceil_texture_enum' does not have recommended slot 'description' (recommended) + warning Enum 'train_stat_loc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'train_stop_loc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'season_use_enum' does not have recommended slot 'description' (recommended) + warning Enum 'substructure_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'surf_material_enum' does not have recommended slot 'description' (recommended) + warning Enum 'light_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'window_horiz_pos_enum' does not have recommended slot 'description' (recommended) + warning Enum 'door_loc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'surf_air_cont_enum' does not have recommended slot 'description' (recommended) warning Enum 'wall_surf_treatment_enum' does not have recommended slot 'description' (recommended) - warning Enum 'arch_struc_enum' does not have recommended slot 'description' (recommended) - warning Enum 'ext_wall_orient_enum' does not have recommended slot 'description' (recommended) - warning Enum 'mech_struc_enum' does not have recommended slot 'description' (recommended) - warning Enum 'door_move_enum' does not have recommended slot 'description' (recommended) - warning Enum 'wall_finish_mat_enum' does not have recommended slot 'description' (recommended) - warning Enum 'door_direct_enum' does not have recommended slot 'description' (recommended) - warning Enum 'window_cover_enum' does not have recommended slot 'description' (recommended) + warning Enum 'door_type_wood_enum' does not have recommended slot 'description' (recommended) warning Enum 'heat_cool_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'door_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'floor_finish_mat_enum' does not have recommended slot 'description' (recommended) warning Enum 'train_line_enum' does not have recommended slot 'description' (recommended) - warning Enum 'room_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'ceil_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'building_setting_enum' does not have recommended slot 'description' (recommended) - warning Enum 'room_connected_enum' does not have recommended slot 'description' (recommended) + warning Enum 'shading_device_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'door_move_enum' does not have recommended slot 'description' (recommended) + warning Enum 'wall_const_type_enum' does not have recommended slot 'description' (recommended) warning Enum 'room_samp_pos_enum' does not have recommended slot 'description' (recommended) + warning Enum 'weekday_enum' does not have recommended slot 'description' (recommended) + warning Enum 'gender_restroom_enum' does not have recommended slot 'description' (recommended) warning Enum 'shading_device_cond_enum' does not have recommended slot 'description' (recommended) - warning Enum 'window_cond_enum' does not have recommended slot 'description' (recommended) - warning Enum 'door_comp_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'heat_deliv_loc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'window_mat_enum' does not have recommended slot 'description' (recommended) + warning Enum 'mech_struc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'room_loc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'furniture_enum' does not have recommended slot 'description' (recommended) warning Enum 'handidness_enum' does not have recommended slot 'description' (recommended) - warning Enum 'window_horiz_pos_enum' does not have recommended slot 'description' (recommended) - warning Enum 'floor_water_mold_enum' does not have recommended slot 'description' (recommended) - warning Enum 'window_loc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'floor_finish_mat_enum' does not have recommended slot 'description' (recommended) + warning Enum 'door_comp_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'door_type_metal_enum' does not have recommended slot 'description' (recommended) warning Enum 'ceil_cond_enum' does not have recommended slot 'description' (recommended) - warning Enum 'filter_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'ceil_texture_enum' does not have recommended slot 'description' (recommended) + warning Enum 'building_setting_enum' does not have recommended slot 'description' (recommended) + warning Enum 'samp_collect_point_enum' does not have recommended slot 'description' (recommended) + warning Enum 'hcr_enum' does not have recommended slot 'description' (recommended) + warning Enum 'rel_to_oxygen_enum' does not have recommended slot 'description' (recommended) warning Enum 'hc_produced_enum' does not have recommended slot 'description' (recommended) warning Enum 'depos_env_enum' does not have recommended slot 'description' (recommended) - warning Enum 'samp_subtype_enum' does not have recommended slot 'description' (recommended) - warning Enum 'rel_to_oxygen_enum' does not have recommended slot 'description' (recommended) - warning Enum 'samp_collect_point_enum' does not have recommended slot 'description' (recommended) + warning Enum 'hcr_geol_age_enum' does not have recommended slot 'description' (recommended) warning Enum 'lithology_enum' does not have recommended slot 'description' (recommended) - warning Enum 'hcr_enum' does not have recommended slot 'description' (recommended) + warning Enum 'samp_subtype_enum' does not have recommended slot 'description' (recommended) warning Enum 'oxy_stat_samp_enum' does not have recommended slot 'description' (recommended) - warning Enum 'hcr_geol_age_enum' does not have recommended slot 'description' (recommended) - warning Enum 'sr_geol_age_enum' does not have recommended slot 'description' (recommended) - warning Enum 'sr_kerog_type_enum' does not have recommended slot 'description' (recommended) warning Enum 'sr_lithology_enum' does not have recommended slot 'description' (recommended) + warning Enum 'sr_kerog_type_enum' does not have recommended slot 'description' (recommended) warning Enum 'sr_dep_env_enum' does not have recommended slot 'description' (recommended) - warning Enum 'fao_class_enum' does not have recommended slot 'description' (recommended) + warning Enum 'sr_geol_age_enum' does not have recommended slot 'description' (recommended) warning Enum 'profile_position_enum' does not have recommended slot 'description' (recommended) - warning Enum 'biotic_relationship_enum' does not have recommended slot 'description' (recommended) warning Enum 'soil_horizon_enum' does not have recommended slot 'description' (recommended) - warning Enum 'drainage_class_enum' does not have recommended slot 'description' (recommended) - warning Enum 'tillage_enum' does not have recommended slot 'description' (recommended) + warning Enum 'fao_class_enum' does not have recommended slot 'description' (recommended) + warning Enum 'biotic_relationship_enum' does not have recommended slot 'description' (recommended) warning Enum 'cur_land_use_enum' does not have recommended slot 'description' (recommended) - warning Enum 'growth_habit_enum' does not have recommended slot 'description' (recommended) - warning Enum 'plant_sex_enum' does not have recommended slot 'description' (recommended) + warning Enum 'tillage_enum' does not have recommended slot 'description' (recommended) + warning Enum 'drainage_class_enum' does not have recommended slot 'description' (recommended) warning Enum 'biol_stat_enum' does not have recommended slot 'description' (recommended) warning Enum 'samp_capt_status_enum' does not have recommended slot 'description' (recommended) warning Enum 'samp_dis_stage_enum' does not have recommended slot 'description' (recommended) - warning Enum 'sediment_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'growth_habit_enum' does not have recommended slot 'description' (recommended) + warning Enum 'plant_sex_enum' does not have recommended slot 'description' (recommended) warning Enum 'tidal_stage_enum' does not have recommended slot 'description' (recommended) + warning Enum 'sediment_type_enum' does not have recommended slot 'description' (recommended) warning Enum 'host_sex_enum' does not have recommended slot 'description' (recommended) warning Subset 'environment' does not have recommended slot 'description' (recommended) warning Subset 'investigation' does not have recommended slot 'description' (recommended) @@ -116,10 +116,10 @@ error Slot 'samp_name' not found on class 'DhMultiviewCommonColumns' (no_invalid_slot_usage) error Slot 'type' not found on class 'AttributeValue' (no_invalid_slot_usage) warning Slot has name 'air_PM_concen' (standard_naming) - warning Slot has name 'investigation field' (standard_naming) - warning Slot has name 'nucleic acid sequence source field' (standard_naming) warning Slot has name 'core field' (standard_naming) + warning Slot has name 'nucleic acid sequence source field' (standard_naming) warning Slot has name 'environment field' (standard_naming) + warning Slot has name 'investigation field' (standard_naming) warning Permissible value of Enum 'BioticRelationshipEnum' has name 'free living' (standard_naming) warning Permissible value of Enum 'BioticRelationshipEnum' has name 'natural organic matter' (standard_naming) warning Permissible value of Enum 'DnaSampleFormatEnum' has name '10 mM Tris-HCl' (standard_naming) @@ -355,17 +355,50 @@ warning Permissible value of Enum 'SpecificEcosystemEnum' has name 'Tropical rainforest' (standard_naming) warning Permissible value of Enum 'SpecificEcosystemEnum' has name 'Unclassified' (standard_naming) warning Permissible value of Enum 'SpecificEcosystemEnum' has name 'Uranium contaminated' (standard_naming) - warning Enum has name 'floor_cond_enum' (standard_naming) - warning Permissible value of Enum 'floor_cond_enum' has name 'visible wear' (standard_naming) - warning Permissible value of Enum 'floor_cond_enum' has name 'needs repair' (standard_naming) - warning Enum has name 'occup_document_enum' (standard_naming) - warning Permissible value of Enum 'occup_document_enum' has name 'automated count' (standard_naming) - warning Permissible value of Enum 'occup_document_enum' has name 'manual count' (standard_naming) - warning Enum has name 'heat_deliv_loc_enum' (standard_naming) - warning Enum has name 'gender_restroom_enum' (standard_naming) - warning Permissible value of Enum 'gender_restroom_enum' has name 'all gender' (standard_naming) - warning Permissible value of Enum 'gender_restroom_enum' has name 'gender neurtral' (standard_naming) - warning Permissible value of Enum 'gender_restroom_enum' has name 'male and female' (standard_naming) + warning Enum has name 'ceil_type_enum' (standard_naming) + warning Permissible value of Enum 'ceil_type_enum' has name 'barrel-shaped' (standard_naming) + warning Enum has name 'floor_water_mold_enum' (standard_naming) + warning Permissible value of Enum 'floor_water_mold_enum' has name 'mold odor' (standard_naming) + warning Permissible value of Enum 'floor_water_mold_enum' has name 'wet floor' (standard_naming) + warning Permissible value of Enum 'floor_water_mold_enum' has name 'water stains' (standard_naming) + warning Permissible value of Enum 'floor_water_mold_enum' has name 'wall discoloration' (standard_naming) + warning Permissible value of Enum 'floor_water_mold_enum' has name 'floor discoloration' (standard_naming) + warning Permissible value of Enum 'floor_water_mold_enum' has name 'ceiling discoloration' (standard_naming) + warning Permissible value of Enum 'floor_water_mold_enum' has name 'peeling paint or wallpaper' (standard_naming) + warning Permissible value of Enum 'floor_water_mold_enum' has name 'bulging walls' (standard_naming) + warning Enum has name 'window_vert_pos_enum' (standard_naming) + warning Enum has name 'specific_enum' (standard_naming) + warning Permissible value of Enum 'specific_enum' has name 'as built' (standard_naming) + warning Enum has name 'ceil_finish_mat_enum' (standard_naming) + warning Permissible value of Enum 'ceil_finish_mat_enum' has name 'mineral fibre' (standard_naming) + warning Permissible value of Enum 'ceil_finish_mat_enum' has name 'PVC' (standard_naming) + warning Permissible value of Enum 'ceil_finish_mat_enum' has name 'mineral wool/calcium silicate' (standard_naming) + warning Enum has name 'indoor_surf_enum' (standard_naming) + warning Permissible value of Enum 'indoor_surf_enum' has name 'counter top' (standard_naming) + warning Permissible value of Enum 'indoor_surf_enum' has name 'vent cover' (standard_naming) + warning Enum has name 'wall_loc_enum' (standard_naming) + warning Enum has name 'window_type_enum' (standard_naming) + warning Permissible value of Enum 'window_type_enum' has name 'single-hung sash window' (standard_naming) + warning Permissible value of Enum 'window_type_enum' has name 'horizontal sash window' (standard_naming) + warning Permissible value of Enum 'window_type_enum' has name 'fixed window' (standard_naming) + warning Enum has name 'samp_floor_enum' (standard_naming) + warning Permissible value of Enum 'samp_floor_enum' has name '1st floor' (standard_naming) + warning Permissible value of Enum 'samp_floor_enum' has name '2nd floor' (standard_naming) + warning Enum has name 'filter_type_enum' (standard_naming) + warning Permissible value of Enum 'filter_type_enum' has name 'particulate air filter' (standard_naming) + warning Permissible value of Enum 'filter_type_enum' has name 'chemical air filter' (standard_naming) + warning Permissible value of Enum 'filter_type_enum' has name 'low-MERV pleated media' (standard_naming) + warning Permissible value of Enum 'filter_type_enum' has name 'HEPA' (standard_naming) + warning Permissible value of Enum 'filter_type_enum' has name 'gas-phase or ultraviolet air treatments' (standard_naming) + warning Enum has name 'window_cover_enum' (standard_naming) + warning Enum has name 'room_condt_enum' (standard_naming) + warning Permissible value of Enum 'room_condt_enum' has name 'visible wear' (standard_naming) + warning Permissible value of Enum 'room_condt_enum' has name 'needs repair' (standard_naming) + warning Permissible value of Enum 'room_condt_enum' has name 'visible signs of mold/mildew' (standard_naming) + warning Enum has name 'room_connected_enum' (standard_naming) + warning Permissible value of Enum 'room_connected_enum' has name 'conference room' (standard_naming) + warning Permissible value of Enum 'room_connected_enum' has name 'examining room' (standard_naming) + warning Permissible value of Enum 'room_connected_enum' has name 'mail room' (standard_naming) warning Enum has name 'build_docs_enum' (standard_naming) warning Permissible value of Enum 'build_docs_enum' has name 'building information model' (standard_naming) warning Permissible value of Enum 'build_docs_enum' has name 'commissioning report' (standard_naming) @@ -376,146 +409,72 @@ warning Permissible value of Enum 'build_docs_enum' has name 'maintenance plans' (standard_naming) warning Permissible value of Enum 'build_docs_enum' has name 'shop drawings' (standard_naming) warning Permissible value of Enum 'build_docs_enum' has name 'ventilation system' (standard_naming) - warning Enum has name 'door_type_wood_enum' (standard_naming) - warning Permissible value of Enum 'door_type_wood_enum' has name 'bettened and ledged' (standard_naming) - warning Permissible value of Enum 'door_type_wood_enum' has name 'ledged and braced' (standard_naming) - warning Permissible value of Enum 'door_type_wood_enum' has name 'ledged and framed' (standard_naming) - warning Permissible value of Enum 'door_type_wood_enum' has name 'ledged, braced and frame' (standard_naming) - warning Permissible value of Enum 'door_type_wood_enum' has name 'framed and paneled' (standard_naming) - warning Permissible value of Enum 'door_type_wood_enum' has name 'glashed or sash' (standard_naming) - warning Permissible value of Enum 'door_type_wood_enum' has name 'wire gauged' (standard_naming) - warning Enum has name 'surf_material_enum' (standard_naming) - warning Permissible value of Enum 'surf_material_enum' has name 'cinder blocks' (standard_naming) - warning Permissible value of Enum 'surf_material_enum' has name 'hay bales' (standard_naming) - warning Permissible value of Enum 'surf_material_enum' has name 'stainless steel' (standard_naming) - warning Enum has name 'furniture_enum' (standard_naming) + warning Enum has name 'indoor_space_enum' (standard_naming) + warning Permissible value of Enum 'indoor_space_enum' has name 'locker room' (standard_naming) + warning Enum has name 'window_loc_enum' (standard_naming) + warning Enum has name 'ext_wall_orient_enum' (standard_naming) warning Enum has name 'drawings_enum' (standard_naming) warning Permissible value of Enum 'drawings_enum' has name 'as built' (standard_naming) warning Permissible value of Enum 'drawings_enum' has name 'building navigation map' (standard_naming) warning Enum has name 'samp_weather_enum' (standard_naming) warning Permissible value of Enum 'samp_weather_enum' has name 'clear sky' (standard_naming) - warning Enum has name 'weekday_enum' (standard_naming) - warning Permissible value of Enum 'weekday_enum' has name 'Monday' (standard_naming) - warning Permissible value of Enum 'weekday_enum' has name 'Tuesday' (standard_naming) - warning Permissible value of Enum 'weekday_enum' has name 'Wednesday' (standard_naming) - warning Permissible value of Enum 'weekday_enum' has name 'Thursday' (standard_naming) - warning Permissible value of Enum 'weekday_enum' has name 'Friday' (standard_naming) - warning Permissible value of Enum 'weekday_enum' has name 'Saturday' (standard_naming) - warning Permissible value of Enum 'weekday_enum' has name 'Sunday' (standard_naming) - warning Enum has name 'window_mat_enum' (standard_naming) - warning Enum has name 'samp_floor_enum' (standard_naming) - warning Permissible value of Enum 'samp_floor_enum' has name '1st floor' (standard_naming) - warning Permissible value of Enum 'samp_floor_enum' has name '2nd floor' (standard_naming) - warning Enum has name 'door_type_metal_enum' (standard_naming) - warning Permissible value of Enum 'door_type_metal_enum' has name 'corrugated steel' (standard_naming) - warning Permissible value of Enum 'door_type_metal_enum' has name 'rolling shutters' (standard_naming) - warning Permissible value of Enum 'door_type_metal_enum' has name 'steel plate' (standard_naming) - warning Enum has name 'ceil_finish_mat_enum' (standard_naming) - warning Permissible value of Enum 'ceil_finish_mat_enum' has name 'mineral fibre' (standard_naming) - warning Permissible value of Enum 'ceil_finish_mat_enum' has name 'PVC' (standard_naming) - warning Permissible value of Enum 'ceil_finish_mat_enum' has name 'mineral wool/calcium silicate' (standard_naming) - warning Enum has name 'vis_media_enum' (standard_naming) - warning Permissible value of Enum 'vis_media_enum' has name 'commonly of the building' (standard_naming) - warning Permissible value of Enum 'vis_media_enum' has name 'site context (adjacent buildings, vegetation, terrain, streets)' (standard_naming) - warning Permissible value of Enum 'vis_media_enum' has name '3D scans' (standard_naming) - warning Enum has name 'room_loc_enum' (standard_naming) - warning Permissible value of Enum 'room_loc_enum' has name 'corner room' (standard_naming) - warning Permissible value of Enum 'room_loc_enum' has name 'interior room' (standard_naming) - warning Permissible value of Enum 'room_loc_enum' has name 'exterior wall' (standard_naming) - warning Enum has name 'wall_const_type_enum' (standard_naming) - warning Permissible value of Enum 'wall_const_type_enum' has name 'frame construction' (standard_naming) - warning Permissible value of Enum 'wall_const_type_enum' has name 'joisted masonry' (standard_naming) - warning Permissible value of Enum 'wall_const_type_enum' has name 'light noncombustible' (standard_naming) - warning Permissible value of Enum 'wall_const_type_enum' has name 'masonry noncombustible' (standard_naming) - warning Permissible value of Enum 'wall_const_type_enum' has name 'modified fire resistive' (standard_naming) - warning Permissible value of Enum 'wall_const_type_enum' has name 'fire resistive' (standard_naming) - warning Enum has name 'surf_air_cont_enum' (standard_naming) - warning Permissible value of Enum 'surf_air_cont_enum' has name 'organic matter' (standard_naming) - warning Permissible value of Enum 'surf_air_cont_enum' has name 'particulate matter' (standard_naming) - warning Permissible value of Enum 'surf_air_cont_enum' has name 'volatile organic compounds' (standard_naming) - warning Permissible value of Enum 'surf_air_cont_enum' has name 'biological contaminants' (standard_naming) - warning Enum has name 'room_condt_enum' (standard_naming) - warning Permissible value of Enum 'room_condt_enum' has name 'visible wear' (standard_naming) - warning Permissible value of Enum 'room_condt_enum' has name 'needs repair' (standard_naming) - warning Permissible value of Enum 'room_condt_enum' has name 'visible signs of mold/mildew' (standard_naming) - warning Enum has name 'door_loc_enum' (standard_naming) - warning Enum has name 'specific_enum' (standard_naming) - warning Permissible value of Enum 'specific_enum' has name 'as built' (standard_naming) - warning Enum has name 'substructure_type_enum' (standard_naming) - warning Permissible value of Enum 'substructure_type_enum' has name 'slab on grade' (standard_naming) - warning Enum has name 'int_wall_cond_enum' (standard_naming) - warning Permissible value of Enum 'int_wall_cond_enum' has name 'visible wear' (standard_naming) - warning Permissible value of Enum 'int_wall_cond_enum' has name 'needs repair' (standard_naming) - warning Enum has name 'shading_device_type_enum' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'bahama shutters' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'exterior roll blind' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'gambrel awning' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'hood awning' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'porchroller awning' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'sarasota shutters' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'slatted aluminum' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'solid aluminum awning' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'sun screen' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'venetian awning' (standard_naming) - warning Enum has name 'window_type_enum' (standard_naming) - warning Permissible value of Enum 'window_type_enum' has name 'single-hung sash window' (standard_naming) - warning Permissible value of Enum 'window_type_enum' has name 'horizontal sash window' (standard_naming) - warning Permissible value of Enum 'window_type_enum' has name 'fixed window' (standard_naming) - warning Enum has name 'door_cond_enum' (standard_naming) - warning Permissible value of Enum 'door_cond_enum' has name 'needs repair' (standard_naming) - warning Permissible value of Enum 'door_cond_enum' has name 'visible wear' (standard_naming) + warning Enum has name 'rel_samp_loc_enum' (standard_naming) + warning Permissible value of Enum 'rel_samp_loc_enum' has name 'edge of car' (standard_naming) + warning Permissible value of Enum 'rel_samp_loc_enum' has name 'center of car' (standard_naming) + warning Permissible value of Enum 'rel_samp_loc_enum' has name 'under a seat' (standard_naming) warning Enum has name 'door_mat_enum' (standard_naming) warning Permissible value of Enum 'door_mat_enum' has name 'cellular PVC' (standard_naming) warning Permissible value of Enum 'door_mat_enum' has name 'engineered plastic' (standard_naming) warning Permissible value of Enum 'door_mat_enum' has name 'thermoplastic alloy' (standard_naming) warning Permissible value of Enum 'door_mat_enum' has name 'wood/plastic composite' (standard_naming) - warning Enum has name 'light_type_enum' (standard_naming) - warning Permissible value of Enum 'light_type_enum' has name 'natural light' (standard_naming) - warning Permissible value of Enum 'light_type_enum' has name 'electric light' (standard_naming) - warning Permissible value of Enum 'light_type_enum' has name 'desk lamp' (standard_naming) - warning Permissible value of Enum 'light_type_enum' has name 'flourescent lights' (standard_naming) + warning Enum has name 'room_type_enum' (standard_naming) + warning Permissible value of Enum 'room_type_enum' has name 'conference room' (standard_naming) + warning Permissible value of Enum 'room_type_enum' has name 'examining room' (standard_naming) + warning Permissible value of Enum 'room_type_enum' has name 'mail room' (standard_naming) + warning Permissible value of Enum 'room_type_enum' has name 'private office' (standard_naming) + warning Permissible value of Enum 'room_type_enum' has name 'open office' (standard_naming) + warning Permissible value of Enum 'room_type_enum' has name ',restroom' (standard_naming) + warning Permissible value of Enum 'room_type_enum' has name 'mechanical or electrical room' (standard_naming) + warning Permissible value of Enum 'room_type_enum' has name 'data center' (standard_naming) + warning Enum has name 'wall_finish_mat_enum' (standard_naming) + warning Permissible value of Enum 'wall_finish_mat_enum' has name 'gypsum plaster' (standard_naming) + warning Permissible value of Enum 'wall_finish_mat_enum' has name 'veneer plaster' (standard_naming) + warning Permissible value of Enum 'wall_finish_mat_enum' has name 'gypsum board' (standard_naming) + warning Permissible value of Enum 'wall_finish_mat_enum' has name 'stone facing' (standard_naming) + warning Permissible value of Enum 'wall_finish_mat_enum' has name 'acoustical treatment' (standard_naming) warning Enum has name 'quad_pos_enum' (standard_naming) warning Permissible value of Enum 'quad_pos_enum' has name 'North side' (standard_naming) warning Permissible value of Enum 'quad_pos_enum' has name 'West side' (standard_naming) warning Permissible value of Enum 'quad_pos_enum' has name 'South side' (standard_naming) warning Permissible value of Enum 'quad_pos_enum' has name 'East side' (standard_naming) - warning Enum has name 'indoor_space_enum' (standard_naming) - warning Permissible value of Enum 'indoor_space_enum' has name 'locker room' (standard_naming) - warning Enum has name 'season_use_enum' (standard_naming) - warning Permissible value of Enum 'season_use_enum' has name 'Spring' (standard_naming) - warning Permissible value of Enum 'season_use_enum' has name 'Summer' (standard_naming) - warning Permissible value of Enum 'season_use_enum' has name 'Fall' (standard_naming) - warning Permissible value of Enum 'season_use_enum' has name 'Winter' (standard_naming) - warning Enum has name 'floor_struc_enum' (standard_naming) - warning Permissible value of Enum 'floor_struc_enum' has name 'floating floor' (standard_naming) - warning Permissible value of Enum 'floor_struc_enum' has name 'glass floor' (standard_naming) - warning Permissible value of Enum 'floor_struc_enum' has name 'raised floor' (standard_naming) - warning Permissible value of Enum 'floor_struc_enum' has name 'sprung floor' (standard_naming) - warning Permissible value of Enum 'floor_struc_enum' has name 'wood-framed' (standard_naming) - warning Enum has name 'train_stat_loc_enum' (standard_naming) - warning Permissible value of Enum 'train_stat_loc_enum' has name 'south station above ground' (standard_naming) - warning Permissible value of Enum 'train_stat_loc_enum' has name 'south station underground' (standard_naming) - warning Permissible value of Enum 'train_stat_loc_enum' has name 'south station amtrak' (standard_naming) - warning Permissible value of Enum 'train_stat_loc_enum' has name 'forest hills' (standard_naming) - warning Enum has name 'ext_window_orient_enum' (standard_naming) warning Enum has name 'build_occup_type_enum' (standard_naming) warning Permissible value of Enum 'build_occup_type_enum' has name 'low rise' (standard_naming) warning Permissible value of Enum 'build_occup_type_enum' has name 'high rise' (standard_naming) warning Permissible value of Enum 'build_occup_type_enum' has name 'wood framed' (standard_naming) warning Permissible value of Enum 'build_occup_type_enum' has name 'health care' (standard_naming) warning Permissible value of Enum 'build_occup_type_enum' has name 'sports complex' (standard_naming) - warning Enum has name 'rel_samp_loc_enum' (standard_naming) - warning Permissible value of Enum 'rel_samp_loc_enum' has name 'edge of car' (standard_naming) - warning Permissible value of Enum 'rel_samp_loc_enum' has name 'center of car' (standard_naming) - warning Permissible value of Enum 'rel_samp_loc_enum' has name 'under a seat' (standard_naming) - warning Enum has name 'window_vert_pos_enum' (standard_naming) - warning Enum has name 'wall_loc_enum' (standard_naming) - warning Enum has name 'indoor_surf_enum' (standard_naming) - warning Permissible value of Enum 'indoor_surf_enum' has name 'counter top' (standard_naming) - warning Permissible value of Enum 'indoor_surf_enum' has name 'vent cover' (standard_naming) - warning Enum has name 'train_stop_loc_enum' (standard_naming) + warning Enum has name 'door_direct_enum' (standard_naming) + warning Enum has name 'ext_window_orient_enum' (standard_naming) + warning Enum has name 'vis_media_enum' (standard_naming) + warning Permissible value of Enum 'vis_media_enum' has name 'commonly of the building' (standard_naming) + warning Permissible value of Enum 'vis_media_enum' has name 'site context (adjacent buildings, vegetation, terrain, streets)' (standard_naming) + warning Permissible value of Enum 'vis_media_enum' has name '3D scans' (standard_naming) + warning Enum has name 'arch_struc_enum' (standard_naming) warning Enum has name 'water_feat_type_enum' (standard_naming) warning Permissible value of Enum 'water_feat_type_enum' has name 'standing feature' (standard_naming) + warning Enum has name 'int_wall_cond_enum' (standard_naming) + warning Permissible value of Enum 'int_wall_cond_enum' has name 'visible wear' (standard_naming) + warning Permissible value of Enum 'int_wall_cond_enum' has name 'needs repair' (standard_naming) + warning Enum has name 'door_type_enum' (standard_naming) + warning Enum has name 'floor_struc_enum' (standard_naming) + warning Permissible value of Enum 'floor_struc_enum' has name 'floating floor' (standard_naming) + warning Permissible value of Enum 'floor_struc_enum' has name 'glass floor' (standard_naming) + warning Permissible value of Enum 'floor_struc_enum' has name 'raised floor' (standard_naming) + warning Permissible value of Enum 'floor_struc_enum' has name 'sprung floor' (standard_naming) + warning Permissible value of Enum 'floor_struc_enum' has name 'wood-framed' (standard_naming) + warning Enum has name 'window_cond_enum' (standard_naming) + warning Permissible value of Enum 'window_cond_enum' has name 'needs repair' (standard_naming) + warning Permissible value of Enum 'window_cond_enum' has name 'visible wear' (standard_naming) warning Enum has name 'wall_texture_enum' (standard_naming) warning Permissible value of Enum 'wall_texture_enum' has name 'crows feet' (standard_naming) warning Permissible value of Enum 'wall_texture_enum' has name 'crows-foot stomp' (standard_naming) @@ -527,53 +486,92 @@ warning Permissible value of Enum 'wall_texture_enum' has name 'Santa-Fe texture' (standard_naming) warning Permissible value of Enum 'wall_texture_enum' has name 'skip trowel' (standard_naming) warning Permissible value of Enum 'wall_texture_enum' has name 'stomp knockdown' (standard_naming) + warning Enum has name 'door_cond_enum' (standard_naming) + warning Permissible value of Enum 'door_cond_enum' has name 'needs repair' (standard_naming) + warning Permissible value of Enum 'door_cond_enum' has name 'visible wear' (standard_naming) + warning Enum has name 'floor_cond_enum' (standard_naming) + warning Permissible value of Enum 'floor_cond_enum' has name 'visible wear' (standard_naming) + warning Permissible value of Enum 'floor_cond_enum' has name 'needs repair' (standard_naming) + warning Enum has name 'occup_document_enum' (standard_naming) + warning Permissible value of Enum 'occup_document_enum' has name 'automated count' (standard_naming) + warning Permissible value of Enum 'occup_document_enum' has name 'manual count' (standard_naming) + warning Enum has name 'ceil_texture_enum' (standard_naming) + warning Permissible value of Enum 'ceil_texture_enum' has name 'crows feet' (standard_naming) + warning Permissible value of Enum 'ceil_texture_enum' has name 'crows-foot stomp' (standard_naming) + warning Permissible value of Enum 'ceil_texture_enum' has name 'double skip' (standard_naming) + warning Permissible value of Enum 'ceil_texture_enum' has name 'hawk and trowel' (standard_naming) + warning Permissible value of Enum 'ceil_texture_enum' has name 'orange peel' (standard_naming) + warning Permissible value of Enum 'ceil_texture_enum' has name 'rosebud stomp' (standard_naming) + warning Permissible value of Enum 'ceil_texture_enum' has name 'Santa-Fe texture' (standard_naming) + warning Permissible value of Enum 'ceil_texture_enum' has name 'skip trowel' (standard_naming) + warning Permissible value of Enum 'ceil_texture_enum' has name 'stomp knockdown' (standard_naming) + warning Enum has name 'train_stat_loc_enum' (standard_naming) + warning Permissible value of Enum 'train_stat_loc_enum' has name 'south station above ground' (standard_naming) + warning Permissible value of Enum 'train_stat_loc_enum' has name 'south station underground' (standard_naming) + warning Permissible value of Enum 'train_stat_loc_enum' has name 'south station amtrak' (standard_naming) + warning Permissible value of Enum 'train_stat_loc_enum' has name 'forest hills' (standard_naming) + warning Enum has name 'train_stop_loc_enum' (standard_naming) + warning Enum has name 'season_use_enum' (standard_naming) + warning Permissible value of Enum 'season_use_enum' has name 'Spring' (standard_naming) + warning Permissible value of Enum 'season_use_enum' has name 'Summer' (standard_naming) + warning Permissible value of Enum 'season_use_enum' has name 'Fall' (standard_naming) + warning Permissible value of Enum 'season_use_enum' has name 'Winter' (standard_naming) + warning Enum has name 'substructure_type_enum' (standard_naming) + warning Permissible value of Enum 'substructure_type_enum' has name 'slab on grade' (standard_naming) + warning Enum has name 'surf_material_enum' (standard_naming) + warning Permissible value of Enum 'surf_material_enum' has name 'cinder blocks' (standard_naming) + warning Permissible value of Enum 'surf_material_enum' has name 'hay bales' (standard_naming) + warning Permissible value of Enum 'surf_material_enum' has name 'stainless steel' (standard_naming) + warning Enum has name 'light_type_enum' (standard_naming) + warning Permissible value of Enum 'light_type_enum' has name 'natural light' (standard_naming) + warning Permissible value of Enum 'light_type_enum' has name 'electric light' (standard_naming) + warning Permissible value of Enum 'light_type_enum' has name 'desk lamp' (standard_naming) + warning Permissible value of Enum 'light_type_enum' has name 'flourescent lights' (standard_naming) + warning Enum has name 'window_horiz_pos_enum' (standard_naming) + warning Enum has name 'door_loc_enum' (standard_naming) + warning Enum has name 'surf_air_cont_enum' (standard_naming) + warning Permissible value of Enum 'surf_air_cont_enum' has name 'organic matter' (standard_naming) + warning Permissible value of Enum 'surf_air_cont_enum' has name 'particulate matter' (standard_naming) + warning Permissible value of Enum 'surf_air_cont_enum' has name 'volatile organic compounds' (standard_naming) + warning Permissible value of Enum 'surf_air_cont_enum' has name 'biological contaminants' (standard_naming) warning Enum has name 'wall_surf_treatment_enum' (standard_naming) warning Permissible value of Enum 'wall_surf_treatment_enum' has name 'wall paper' (standard_naming) warning Permissible value of Enum 'wall_surf_treatment_enum' has name 'no treatment' (standard_naming) - warning Enum has name 'arch_struc_enum' (standard_naming) - warning Enum has name 'ext_wall_orient_enum' (standard_naming) - warning Enum has name 'mech_struc_enum' (standard_naming) - warning Enum has name 'door_move_enum' (standard_naming) - warning Permissible value of Enum 'door_move_enum' has name 'rolling shutter' (standard_naming) - warning Enum has name 'wall_finish_mat_enum' (standard_naming) - warning Permissible value of Enum 'wall_finish_mat_enum' has name 'gypsum plaster' (standard_naming) - warning Permissible value of Enum 'wall_finish_mat_enum' has name 'veneer plaster' (standard_naming) - warning Permissible value of Enum 'wall_finish_mat_enum' has name 'gypsum board' (standard_naming) - warning Permissible value of Enum 'wall_finish_mat_enum' has name 'stone facing' (standard_naming) - warning Permissible value of Enum 'wall_finish_mat_enum' has name 'acoustical treatment' (standard_naming) - warning Enum has name 'door_direct_enum' (standard_naming) - warning Enum has name 'window_cover_enum' (standard_naming) + warning Enum has name 'door_type_wood_enum' (standard_naming) + warning Permissible value of Enum 'door_type_wood_enum' has name 'bettened and ledged' (standard_naming) + warning Permissible value of Enum 'door_type_wood_enum' has name 'ledged and braced' (standard_naming) + warning Permissible value of Enum 'door_type_wood_enum' has name 'ledged and framed' (standard_naming) + warning Permissible value of Enum 'door_type_wood_enum' has name 'ledged, braced and frame' (standard_naming) + warning Permissible value of Enum 'door_type_wood_enum' has name 'framed and paneled' (standard_naming) + warning Permissible value of Enum 'door_type_wood_enum' has name 'glashed or sash' (standard_naming) + warning Permissible value of Enum 'door_type_wood_enum' has name 'wire gauged' (standard_naming) warning Enum has name 'heat_cool_type_enum' (standard_naming) warning Permissible value of Enum 'heat_cool_type_enum' has name 'radiant system' (standard_naming) warning Permissible value of Enum 'heat_cool_type_enum' has name 'heat pump' (standard_naming) warning Permissible value of Enum 'heat_cool_type_enum' has name 'forced air system' (standard_naming) warning Permissible value of Enum 'heat_cool_type_enum' has name 'steam forced heat' (standard_naming) warning Permissible value of Enum 'heat_cool_type_enum' has name 'wood stove' (standard_naming) - warning Enum has name 'door_type_enum' (standard_naming) - warning Enum has name 'floor_finish_mat_enum' (standard_naming) - warning Permissible value of Enum 'floor_finish_mat_enum' has name 'wood strip or parquet' (standard_naming) - warning Permissible value of Enum 'floor_finish_mat_enum' has name 'laminate wood' (standard_naming) - warning Permissible value of Enum 'floor_finish_mat_enum' has name 'vinyl composition tile' (standard_naming) - warning Permissible value of Enum 'floor_finish_mat_enum' has name 'sheet vinyl' (standard_naming) - warning Permissible value of Enum 'floor_finish_mat_enum' has name 'clear finish' (standard_naming) - warning Permissible value of Enum 'floor_finish_mat_enum' has name 'none or unfinished' (standard_naming) warning Enum has name 'train_line_enum' (standard_naming) - warning Enum has name 'room_type_enum' (standard_naming) - warning Permissible value of Enum 'room_type_enum' has name 'conference room' (standard_naming) - warning Permissible value of Enum 'room_type_enum' has name 'examining room' (standard_naming) - warning Permissible value of Enum 'room_type_enum' has name 'mail room' (standard_naming) - warning Permissible value of Enum 'room_type_enum' has name 'private office' (standard_naming) - warning Permissible value of Enum 'room_type_enum' has name 'open office' (standard_naming) - warning Permissible value of Enum 'room_type_enum' has name ',restroom' (standard_naming) - warning Permissible value of Enum 'room_type_enum' has name 'mechanical or electrical room' (standard_naming) - warning Permissible value of Enum 'room_type_enum' has name 'data center' (standard_naming) - warning Enum has name 'ceil_type_enum' (standard_naming) - warning Permissible value of Enum 'ceil_type_enum' has name 'barrel-shaped' (standard_naming) - warning Enum has name 'building_setting_enum' (standard_naming) - warning Enum has name 'room_connected_enum' (standard_naming) - warning Permissible value of Enum 'room_connected_enum' has name 'conference room' (standard_naming) - warning Permissible value of Enum 'room_connected_enum' has name 'examining room' (standard_naming) - warning Permissible value of Enum 'room_connected_enum' has name 'mail room' (standard_naming) + warning Enum has name 'shading_device_type_enum' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'bahama shutters' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'exterior roll blind' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'gambrel awning' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'hood awning' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'porchroller awning' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'sarasota shutters' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'slatted aluminum' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'solid aluminum awning' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'sun screen' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'venetian awning' (standard_naming) + warning Enum has name 'door_move_enum' (standard_naming) + warning Permissible value of Enum 'door_move_enum' has name 'rolling shutter' (standard_naming) + warning Enum has name 'wall_const_type_enum' (standard_naming) + warning Permissible value of Enum 'wall_const_type_enum' has name 'frame construction' (standard_naming) + warning Permissible value of Enum 'wall_const_type_enum' has name 'joisted masonry' (standard_naming) + warning Permissible value of Enum 'wall_const_type_enum' has name 'light noncombustible' (standard_naming) + warning Permissible value of Enum 'wall_const_type_enum' has name 'masonry noncombustible' (standard_naming) + warning Permissible value of Enum 'wall_const_type_enum' has name 'modified fire resistive' (standard_naming) + warning Permissible value of Enum 'wall_const_type_enum' has name 'fire resistive' (standard_naming) warning Enum has name 'room_samp_pos_enum' (standard_naming) warning Permissible value of Enum 'room_samp_pos_enum' has name 'north corner' (standard_naming) warning Permissible value of Enum 'room_samp_pos_enum' has name 'south corner' (standard_naming) @@ -583,48 +581,65 @@ warning Permissible value of Enum 'room_samp_pos_enum' has name 'northwest corner' (standard_naming) warning Permissible value of Enum 'room_samp_pos_enum' has name 'southeast corner' (standard_naming) warning Permissible value of Enum 'room_samp_pos_enum' has name 'southwest corner' (standard_naming) + warning Enum has name 'weekday_enum' (standard_naming) + warning Permissible value of Enum 'weekday_enum' has name 'Monday' (standard_naming) + warning Permissible value of Enum 'weekday_enum' has name 'Tuesday' (standard_naming) + warning Permissible value of Enum 'weekday_enum' has name 'Wednesday' (standard_naming) + warning Permissible value of Enum 'weekday_enum' has name 'Thursday' (standard_naming) + warning Permissible value of Enum 'weekday_enum' has name 'Friday' (standard_naming) + warning Permissible value of Enum 'weekday_enum' has name 'Saturday' (standard_naming) + warning Permissible value of Enum 'weekday_enum' has name 'Sunday' (standard_naming) + warning Enum has name 'gender_restroom_enum' (standard_naming) + warning Permissible value of Enum 'gender_restroom_enum' has name 'all gender' (standard_naming) + warning Permissible value of Enum 'gender_restroom_enum' has name 'gender neurtral' (standard_naming) + warning Permissible value of Enum 'gender_restroom_enum' has name 'male and female' (standard_naming) warning Enum has name 'shading_device_cond_enum' (standard_naming) warning Permissible value of Enum 'shading_device_cond_enum' has name 'needs repair' (standard_naming) warning Permissible value of Enum 'shading_device_cond_enum' has name 'visible wear' (standard_naming) - warning Enum has name 'window_cond_enum' (standard_naming) - warning Permissible value of Enum 'window_cond_enum' has name 'needs repair' (standard_naming) - warning Permissible value of Enum 'window_cond_enum' has name 'visible wear' (standard_naming) - warning Enum has name 'door_comp_type_enum' (standard_naming) - warning Permissible value of Enum 'door_comp_type_enum' has name 'metal covered' (standard_naming) + warning Enum has name 'heat_deliv_loc_enum' (standard_naming) + warning Enum has name 'window_mat_enum' (standard_naming) + warning Enum has name 'mech_struc_enum' (standard_naming) + warning Enum has name 'room_loc_enum' (standard_naming) + warning Permissible value of Enum 'room_loc_enum' has name 'corner room' (standard_naming) + warning Permissible value of Enum 'room_loc_enum' has name 'interior room' (standard_naming) + warning Permissible value of Enum 'room_loc_enum' has name 'exterior wall' (standard_naming) + warning Enum has name 'furniture_enum' (standard_naming) warning Enum has name 'handidness_enum' (standard_naming) warning Permissible value of Enum 'handidness_enum' has name 'left handedness' (standard_naming) warning Permissible value of Enum 'handidness_enum' has name 'mixed-handedness' (standard_naming) warning Permissible value of Enum 'handidness_enum' has name 'right handedness' (standard_naming) - warning Enum has name 'window_horiz_pos_enum' (standard_naming) - warning Enum has name 'floor_water_mold_enum' (standard_naming) - warning Permissible value of Enum 'floor_water_mold_enum' has name 'mold odor' (standard_naming) - warning Permissible value of Enum 'floor_water_mold_enum' has name 'wet floor' (standard_naming) - warning Permissible value of Enum 'floor_water_mold_enum' has name 'water stains' (standard_naming) - warning Permissible value of Enum 'floor_water_mold_enum' has name 'wall discoloration' (standard_naming) - warning Permissible value of Enum 'floor_water_mold_enum' has name 'floor discoloration' (standard_naming) - warning Permissible value of Enum 'floor_water_mold_enum' has name 'ceiling discoloration' (standard_naming) - warning Permissible value of Enum 'floor_water_mold_enum' has name 'peeling paint or wallpaper' (standard_naming) - warning Permissible value of Enum 'floor_water_mold_enum' has name 'bulging walls' (standard_naming) - warning Enum has name 'window_loc_enum' (standard_naming) + warning Enum has name 'floor_finish_mat_enum' (standard_naming) + warning Permissible value of Enum 'floor_finish_mat_enum' has name 'wood strip or parquet' (standard_naming) + warning Permissible value of Enum 'floor_finish_mat_enum' has name 'laminate wood' (standard_naming) + warning Permissible value of Enum 'floor_finish_mat_enum' has name 'vinyl composition tile' (standard_naming) + warning Permissible value of Enum 'floor_finish_mat_enum' has name 'sheet vinyl' (standard_naming) + warning Permissible value of Enum 'floor_finish_mat_enum' has name 'clear finish' (standard_naming) + warning Permissible value of Enum 'floor_finish_mat_enum' has name 'none or unfinished' (standard_naming) + warning Enum has name 'door_comp_type_enum' (standard_naming) + warning Permissible value of Enum 'door_comp_type_enum' has name 'metal covered' (standard_naming) + warning Enum has name 'door_type_metal_enum' (standard_naming) + warning Permissible value of Enum 'door_type_metal_enum' has name 'corrugated steel' (standard_naming) + warning Permissible value of Enum 'door_type_metal_enum' has name 'rolling shutters' (standard_naming) + warning Permissible value of Enum 'door_type_metal_enum' has name 'steel plate' (standard_naming) warning Enum has name 'ceil_cond_enum' (standard_naming) warning Permissible value of Enum 'ceil_cond_enum' has name 'visible wear' (standard_naming) warning Permissible value of Enum 'ceil_cond_enum' has name 'needs repair' (standard_naming) - warning Enum has name 'filter_type_enum' (standard_naming) - warning Permissible value of Enum 'filter_type_enum' has name 'particulate air filter' (standard_naming) - warning Permissible value of Enum 'filter_type_enum' has name 'chemical air filter' (standard_naming) - warning Permissible value of Enum 'filter_type_enum' has name 'low-MERV pleated media' (standard_naming) - warning Permissible value of Enum 'filter_type_enum' has name 'HEPA' (standard_naming) - warning Permissible value of Enum 'filter_type_enum' has name 'gas-phase or ultraviolet air treatments' (standard_naming) - warning Enum has name 'ceil_texture_enum' (standard_naming) - warning Permissible value of Enum 'ceil_texture_enum' has name 'crows feet' (standard_naming) - warning Permissible value of Enum 'ceil_texture_enum' has name 'crows-foot stomp' (standard_naming) - warning Permissible value of Enum 'ceil_texture_enum' has name 'double skip' (standard_naming) - warning Permissible value of Enum 'ceil_texture_enum' has name 'hawk and trowel' (standard_naming) - warning Permissible value of Enum 'ceil_texture_enum' has name 'orange peel' (standard_naming) - warning Permissible value of Enum 'ceil_texture_enum' has name 'rosebud stomp' (standard_naming) - warning Permissible value of Enum 'ceil_texture_enum' has name 'Santa-Fe texture' (standard_naming) - warning Permissible value of Enum 'ceil_texture_enum' has name 'skip trowel' (standard_naming) - warning Permissible value of Enum 'ceil_texture_enum' has name 'stomp knockdown' (standard_naming) + warning Enum has name 'building_setting_enum' (standard_naming) + warning Enum has name 'samp_collect_point_enum' (standard_naming) + warning Permissible value of Enum 'samp_collect_point_enum' has name 'test well' (standard_naming) + warning Permissible value of Enum 'samp_collect_point_enum' has name 'drilling rig' (standard_naming) + warning Permissible value of Enum 'samp_collect_point_enum' has name 'storage tank' (standard_naming) + warning Enum has name 'hcr_enum' (standard_naming) + warning Permissible value of Enum 'hcr_enum' has name 'Oil Reservoir' (standard_naming) + warning Permissible value of Enum 'hcr_enum' has name 'Gas Reservoir' (standard_naming) + warning Permissible value of Enum 'hcr_enum' has name 'Oil Sand' (standard_naming) + warning Permissible value of Enum 'hcr_enum' has name 'Coalbed' (standard_naming) + warning Permissible value of Enum 'hcr_enum' has name 'Shale' (standard_naming) + warning Permissible value of Enum 'hcr_enum' has name 'Tight Oil Reservoir' (standard_naming) + warning Permissible value of Enum 'hcr_enum' has name 'Tight Gas Reservoir' (standard_naming) + warning Enum has name 'rel_to_oxygen_enum' (standard_naming) + warning Permissible value of Enum 'rel_to_oxygen_enum' has name 'obligate aerobe' (standard_naming) + warning Permissible value of Enum 'rel_to_oxygen_enum' has name 'obligate anaerobe' (standard_naming) warning Enum has name 'hc_produced_enum' (standard_naming) warning Permissible value of Enum 'hc_produced_enum' has name 'Oil' (standard_naming) warning Permissible value of Enum 'hc_produced_enum' has name 'Gas-Condensate' (standard_naming) @@ -647,39 +662,6 @@ warning Permissible value of Enum 'depos_env_enum' has name 'Other - Evaporite' (standard_naming) warning Permissible value of Enum 'depos_env_enum' has name 'Other - Glacial' (standard_naming) warning Permissible value of Enum 'depos_env_enum' has name 'Other - Volcanic' (standard_naming) - warning Enum has name 'samp_subtype_enum' (standard_naming) - warning Permissible value of Enum 'samp_subtype_enum' has name 'oil phase' (standard_naming) - warning Permissible value of Enum 'samp_subtype_enum' has name 'water phase' (standard_naming) - warning Permissible value of Enum 'samp_subtype_enum' has name 'not applicable' (standard_naming) - warning Enum has name 'rel_to_oxygen_enum' (standard_naming) - warning Permissible value of Enum 'rel_to_oxygen_enum' has name 'obligate aerobe' (standard_naming) - warning Permissible value of Enum 'rel_to_oxygen_enum' has name 'obligate anaerobe' (standard_naming) - warning Enum has name 'samp_collect_point_enum' (standard_naming) - warning Permissible value of Enum 'samp_collect_point_enum' has name 'test well' (standard_naming) - warning Permissible value of Enum 'samp_collect_point_enum' has name 'drilling rig' (standard_naming) - warning Permissible value of Enum 'samp_collect_point_enum' has name 'storage tank' (standard_naming) - warning Enum has name 'lithology_enum' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Basement' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Chalk' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Chert' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Coal' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Conglomerate' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Diatomite' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Dolomite' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Limestone' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Sandstone' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Shale' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Siltstone' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Volcanic' (standard_naming) - warning Enum has name 'hcr_enum' (standard_naming) - warning Permissible value of Enum 'hcr_enum' has name 'Oil Reservoir' (standard_naming) - warning Permissible value of Enum 'hcr_enum' has name 'Gas Reservoir' (standard_naming) - warning Permissible value of Enum 'hcr_enum' has name 'Oil Sand' (standard_naming) - warning Permissible value of Enum 'hcr_enum' has name 'Coalbed' (standard_naming) - warning Permissible value of Enum 'hcr_enum' has name 'Shale' (standard_naming) - warning Permissible value of Enum 'hcr_enum' has name 'Tight Oil Reservoir' (standard_naming) - warning Permissible value of Enum 'hcr_enum' has name 'Tight Gas Reservoir' (standard_naming) - warning Enum has name 'oxy_stat_samp_enum' (standard_naming) warning Enum has name 'hcr_geol_age_enum' (standard_naming) warning Permissible value of Enum 'hcr_geol_age_enum' has name 'Archean' (standard_naming) warning Permissible value of Enum 'hcr_geol_age_enum' has name 'Cambrian' (standard_naming) @@ -698,6 +680,39 @@ warning Permissible value of Enum 'hcr_geol_age_enum' has name 'Proterozoic' (standard_naming) warning Permissible value of Enum 'hcr_geol_age_enum' has name 'Silurian' (standard_naming) warning Permissible value of Enum 'hcr_geol_age_enum' has name 'Triassic' (standard_naming) + warning Enum has name 'lithology_enum' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Basement' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Chalk' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Chert' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Coal' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Conglomerate' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Diatomite' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Dolomite' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Limestone' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Sandstone' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Shale' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Siltstone' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Volcanic' (standard_naming) + warning Enum has name 'samp_subtype_enum' (standard_naming) + warning Permissible value of Enum 'samp_subtype_enum' has name 'oil phase' (standard_naming) + warning Permissible value of Enum 'samp_subtype_enum' has name 'water phase' (standard_naming) + warning Permissible value of Enum 'samp_subtype_enum' has name 'not applicable' (standard_naming) + warning Enum has name 'oxy_stat_samp_enum' (standard_naming) + warning Enum has name 'sr_lithology_enum' (standard_naming) + warning Permissible value of Enum 'sr_lithology_enum' has name 'Clastic' (standard_naming) + warning Permissible value of Enum 'sr_lithology_enum' has name 'Carbonate' (standard_naming) + warning Permissible value of Enum 'sr_lithology_enum' has name 'Coal' (standard_naming) + warning Permissible value of Enum 'sr_lithology_enum' has name 'Biosilicieous' (standard_naming) + warning Enum has name 'sr_kerog_type_enum' (standard_naming) + warning Permissible value of Enum 'sr_kerog_type_enum' has name 'Type I' (standard_naming) + warning Permissible value of Enum 'sr_kerog_type_enum' has name 'Type II' (standard_naming) + warning Permissible value of Enum 'sr_kerog_type_enum' has name 'Type III' (standard_naming) + warning Permissible value of Enum 'sr_kerog_type_enum' has name 'Type IV' (standard_naming) + warning Enum has name 'sr_dep_env_enum' (standard_naming) + warning Permissible value of Enum 'sr_dep_env_enum' has name 'Lacustine' (standard_naming) + warning Permissible value of Enum 'sr_dep_env_enum' has name 'Fluvioldeltaic' (standard_naming) + warning Permissible value of Enum 'sr_dep_env_enum' has name 'Fluviomarine' (standard_naming) + warning Permissible value of Enum 'sr_dep_env_enum' has name 'Marine' (standard_naming) warning Enum has name 'sr_geol_age_enum' (standard_naming) warning Permissible value of Enum 'sr_geol_age_enum' has name 'Archean' (standard_naming) warning Permissible value of Enum 'sr_geol_age_enum' has name 'Cambrian' (standard_naming) @@ -716,21 +731,15 @@ warning Permissible value of Enum 'sr_geol_age_enum' has name 'Proterozoic' (standard_naming) warning Permissible value of Enum 'sr_geol_age_enum' has name 'Silurian' (standard_naming) warning Permissible value of Enum 'sr_geol_age_enum' has name 'Triassic' (standard_naming) - warning Enum has name 'sr_kerog_type_enum' (standard_naming) - warning Permissible value of Enum 'sr_kerog_type_enum' has name 'Type I' (standard_naming) - warning Permissible value of Enum 'sr_kerog_type_enum' has name 'Type II' (standard_naming) - warning Permissible value of Enum 'sr_kerog_type_enum' has name 'Type III' (standard_naming) - warning Permissible value of Enum 'sr_kerog_type_enum' has name 'Type IV' (standard_naming) - warning Enum has name 'sr_lithology_enum' (standard_naming) - warning Permissible value of Enum 'sr_lithology_enum' has name 'Clastic' (standard_naming) - warning Permissible value of Enum 'sr_lithology_enum' has name 'Carbonate' (standard_naming) - warning Permissible value of Enum 'sr_lithology_enum' has name 'Coal' (standard_naming) - warning Permissible value of Enum 'sr_lithology_enum' has name 'Biosilicieous' (standard_naming) - warning Enum has name 'sr_dep_env_enum' (standard_naming) - warning Permissible value of Enum 'sr_dep_env_enum' has name 'Lacustine' (standard_naming) - warning Permissible value of Enum 'sr_dep_env_enum' has name 'Fluvioldeltaic' (standard_naming) - warning Permissible value of Enum 'sr_dep_env_enum' has name 'Fluviomarine' (standard_naming) - warning Permissible value of Enum 'sr_dep_env_enum' has name 'Marine' (standard_naming) + warning Enum has name 'profile_position_enum' (standard_naming) + warning Enum has name 'soil_horizon_enum' (standard_naming) + warning Permissible value of Enum 'soil_horizon_enum' has name 'O horizon' (standard_naming) + warning Permissible value of Enum 'soil_horizon_enum' has name 'A horizon' (standard_naming) + warning Permissible value of Enum 'soil_horizon_enum' has name 'E horizon' (standard_naming) + warning Permissible value of Enum 'soil_horizon_enum' has name 'B horizon' (standard_naming) + warning Permissible value of Enum 'soil_horizon_enum' has name 'C horizon' (standard_naming) + warning Permissible value of Enum 'soil_horizon_enum' has name 'R layer' (standard_naming) + warning Permissible value of Enum 'soil_horizon_enum' has name 'Permafrost' (standard_naming) warning Enum has name 'fao_class_enum' (standard_naming) warning Permissible value of Enum 'fao_class_enum' has name 'Acrisols' (standard_naming) warning Permissible value of Enum 'fao_class_enum' has name 'Andosols' (standard_naming) @@ -758,28 +767,8 @@ warning Permissible value of Enum 'fao_class_enum' has name 'Solonetz' (standard_naming) warning Permissible value of Enum 'fao_class_enum' has name 'Vertisols' (standard_naming) warning Permissible value of Enum 'fao_class_enum' has name 'Yermosols' (standard_naming) - warning Enum has name 'profile_position_enum' (standard_naming) warning Enum has name 'biotic_relationship_enum' (standard_naming) warning Permissible value of Enum 'biotic_relationship_enum' has name 'free living' (standard_naming) - warning Enum has name 'soil_horizon_enum' (standard_naming) - warning Permissible value of Enum 'soil_horizon_enum' has name 'O horizon' (standard_naming) - warning Permissible value of Enum 'soil_horizon_enum' has name 'A horizon' (standard_naming) - warning Permissible value of Enum 'soil_horizon_enum' has name 'E horizon' (standard_naming) - warning Permissible value of Enum 'soil_horizon_enum' has name 'B horizon' (standard_naming) - warning Permissible value of Enum 'soil_horizon_enum' has name 'C horizon' (standard_naming) - warning Permissible value of Enum 'soil_horizon_enum' has name 'R layer' (standard_naming) - warning Permissible value of Enum 'soil_horizon_enum' has name 'Permafrost' (standard_naming) - warning Enum has name 'drainage_class_enum' (standard_naming) - warning Permissible value of Enum 'drainage_class_enum' has name 'very poorly' (standard_naming) - warning Permissible value of Enum 'drainage_class_enum' has name 'somewhat poorly' (standard_naming) - warning Permissible value of Enum 'drainage_class_enum' has name 'moderately well' (standard_naming) - warning Permissible value of Enum 'drainage_class_enum' has name 'excessively drained' (standard_naming) - warning Enum has name 'tillage_enum' (standard_naming) - warning Permissible value of Enum 'tillage_enum' has name 'cutting disc' (standard_naming) - warning Permissible value of Enum 'tillage_enum' has name 'ridge till' (standard_naming) - warning Permissible value of Enum 'tillage_enum' has name 'strip tillage' (standard_naming) - warning Permissible value of Enum 'tillage_enum' has name 'zonal tillage' (standard_naming) - warning Permissible value of Enum 'tillage_enum' has name 'disc plough' (standard_naming) warning Enum has name 'cur_land_use_enum' (standard_naming) warning Permissible value of Enum 'cur_land_use_enum' has name 'industrial areas' (standard_naming) warning Permissible value of Enum 'cur_land_use_enum' has name 'roads/railroads' (standard_naming) @@ -807,6 +796,29 @@ warning Permissible value of Enum 'cur_land_use_enum' has name 'rainforest (evergreen forest receiving greater than 406 cm annual rainfall)' (standard_naming) warning Permissible value of Enum 'cur_land_use_enum' has name 'swamp (permanent or semi-permanent water body dominated by woody plants)' (standard_naming) warning Permissible value of Enum 'cur_land_use_enum' has name 'crop trees (nuts,fruit,christmas trees,nursery trees)' (standard_naming) + warning Enum has name 'tillage_enum' (standard_naming) + warning Permissible value of Enum 'tillage_enum' has name 'cutting disc' (standard_naming) + warning Permissible value of Enum 'tillage_enum' has name 'ridge till' (standard_naming) + warning Permissible value of Enum 'tillage_enum' has name 'strip tillage' (standard_naming) + warning Permissible value of Enum 'tillage_enum' has name 'zonal tillage' (standard_naming) + warning Permissible value of Enum 'tillage_enum' has name 'disc plough' (standard_naming) + warning Enum has name 'drainage_class_enum' (standard_naming) + warning Permissible value of Enum 'drainage_class_enum' has name 'very poorly' (standard_naming) + warning Permissible value of Enum 'drainage_class_enum' has name 'somewhat poorly' (standard_naming) + warning Permissible value of Enum 'drainage_class_enum' has name 'moderately well' (standard_naming) + warning Permissible value of Enum 'drainage_class_enum' has name 'excessively drained' (standard_naming) + warning Enum has name 'biol_stat_enum' (standard_naming) + warning Permissible value of Enum 'biol_stat_enum' has name 'semi-natural' (standard_naming) + warning Permissible value of Enum 'biol_stat_enum' has name 'inbred line' (standard_naming) + warning Permissible value of Enum 'biol_stat_enum' has name 'breeder's line' (standard_naming) + warning Permissible value of Enum 'biol_stat_enum' has name 'clonal selection' (standard_naming) + warning Enum has name 'samp_capt_status_enum' (standard_naming) + warning Permissible value of Enum 'samp_capt_status_enum' has name 'active surveillance in response to an outbreak' (standard_naming) + warning Permissible value of Enum 'samp_capt_status_enum' has name 'active surveillance not initiated by an outbreak' (standard_naming) + warning Permissible value of Enum 'samp_capt_status_enum' has name 'farm sample' (standard_naming) + warning Permissible value of Enum 'samp_capt_status_enum' has name 'market sample' (standard_naming) + warning Enum has name 'samp_dis_stage_enum' (standard_naming) + warning Permissible value of Enum 'samp_dis_stage_enum' has name 'growth and reproduction' (standard_naming) warning Enum has name 'growth_habit_enum' (standard_naming) warning Permissible value of Enum 'growth_habit_enum' has name 'semi-erect' (standard_naming) warning Enum has name 'plant_sex_enum' (standard_naming) @@ -839,24 +851,12 @@ warning Permissible value of Enum 'plant_sex_enum' has name 'Trimonoecious' (standard_naming) warning Permissible value of Enum 'plant_sex_enum' has name 'Trioecious' (standard_naming) warning Permissible value of Enum 'plant_sex_enum' has name 'Unisexual' (standard_naming) - warning Enum has name 'biol_stat_enum' (standard_naming) - warning Permissible value of Enum 'biol_stat_enum' has name 'semi-natural' (standard_naming) - warning Permissible value of Enum 'biol_stat_enum' has name 'inbred line' (standard_naming) - warning Permissible value of Enum 'biol_stat_enum' has name 'breeder's line' (standard_naming) - warning Permissible value of Enum 'biol_stat_enum' has name 'clonal selection' (standard_naming) - warning Enum has name 'samp_capt_status_enum' (standard_naming) - warning Permissible value of Enum 'samp_capt_status_enum' has name 'active surveillance in response to an outbreak' (standard_naming) - warning Permissible value of Enum 'samp_capt_status_enum' has name 'active surveillance not initiated by an outbreak' (standard_naming) - warning Permissible value of Enum 'samp_capt_status_enum' has name 'farm sample' (standard_naming) - warning Permissible value of Enum 'samp_capt_status_enum' has name 'market sample' (standard_naming) - warning Enum has name 'samp_dis_stage_enum' (standard_naming) - warning Permissible value of Enum 'samp_dis_stage_enum' has name 'growth and reproduction' (standard_naming) - warning Enum has name 'sediment_type_enum' (standard_naming) warning Enum has name 'tidal_stage_enum' (standard_naming) warning Permissible value of Enum 'tidal_stage_enum' has name 'low tide' (standard_naming) warning Permissible value of Enum 'tidal_stage_enum' has name 'ebb tide' (standard_naming) warning Permissible value of Enum 'tidal_stage_enum' has name 'flood tide' (standard_naming) warning Permissible value of Enum 'tidal_stage_enum' has name 'high tide' (standard_naming) + warning Enum has name 'sediment_type_enum' (standard_naming) warning Enum has name 'host_sex_enum' (standard_naming) ✖ Found 859 problems in 1 schema diff --git a/sheets_and_friends/with_shuttles.lint_report.txt b/sheets_and_friends/with_shuttles.lint_report.txt index ed9e68b3..a6bcbbdf 100644 --- a/sheets_and_friends/with_shuttles.lint_report.txt +++ b/sheets_and_friends/with_shuttles.lint_report.txt @@ -1,111 +1,111 @@ -/Users/MAM/Documents/gitrepos/submission-schema/sheets_and_friends/yaml_out/with_shuttles.yaml +/Users/PAKalita/Work/submission-schema/sheets_and_friends/yaml_out/with_shuttles.yaml warning Class 'DhMultiviewCommonColumns' does not have recommended slot 'description' (recommended) warning Class 'OntologyClass' does not have recommended slot 'description' (recommended) - warning Slot 'was_generated_by' does not have recommended slot 'description' (recommended) - warning Slot 'started_at_time' does not have recommended slot 'description' (recommended) - warning Slot 'nucleic acid sequence source field' does not have recommended slot 'description' (recommended) - warning Slot 'ended_at_time' does not have recommended slot 'description' (recommended) warning Slot 'acted_on_behalf_of' does not have recommended slot 'description' (recommended) + warning Slot 'nucleic acid sequence source field' does not have recommended slot 'description' (recommended) warning Slot 'was_associated_with' does not have recommended slot 'description' (recommended) - warning Slot 'was_informed_by' does not have recommended slot 'description' (recommended) warning Slot 'used' does not have recommended slot 'description' (recommended) - warning Enum 'floor_cond_enum' does not have recommended slot 'description' (recommended) - warning Enum 'occup_document_enum' does not have recommended slot 'description' (recommended) - warning Enum 'heat_deliv_loc_enum' does not have recommended slot 'description' (recommended) - warning Enum 'gender_restroom_enum' does not have recommended slot 'description' (recommended) + warning Slot 'ended_at_time' does not have recommended slot 'description' (recommended) + warning Slot 'was_generated_by' does not have recommended slot 'description' (recommended) + warning Slot 'started_at_time' does not have recommended slot 'description' (recommended) + warning Slot 'was_informed_by' does not have recommended slot 'description' (recommended) + warning Enum 'ceil_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'floor_water_mold_enum' does not have recommended slot 'description' (recommended) + warning Enum 'window_vert_pos_enum' does not have recommended slot 'description' (recommended) + warning Enum 'specific_enum' does not have recommended slot 'description' (recommended) + warning Enum 'ceil_finish_mat_enum' does not have recommended slot 'description' (recommended) + warning Enum 'indoor_surf_enum' does not have recommended slot 'description' (recommended) + warning Enum 'wall_loc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'window_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'samp_floor_enum' does not have recommended slot 'description' (recommended) + warning Enum 'filter_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'window_cover_enum' does not have recommended slot 'description' (recommended) + warning Enum 'room_condt_enum' does not have recommended slot 'description' (recommended) + warning Enum 'room_connected_enum' does not have recommended slot 'description' (recommended) warning Enum 'build_docs_enum' does not have recommended slot 'description' (recommended) - warning Enum 'door_type_wood_enum' does not have recommended slot 'description' (recommended) - warning Enum 'surf_material_enum' does not have recommended slot 'description' (recommended) - warning Enum 'furniture_enum' does not have recommended slot 'description' (recommended) + warning Enum 'indoor_space_enum' does not have recommended slot 'description' (recommended) + warning Enum 'window_loc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'ext_wall_orient_enum' does not have recommended slot 'description' (recommended) warning Enum 'drawings_enum' does not have recommended slot 'description' (recommended) warning Enum 'samp_weather_enum' does not have recommended slot 'description' (recommended) - warning Enum 'weekday_enum' does not have recommended slot 'description' (recommended) - warning Enum 'window_mat_enum' does not have recommended slot 'description' (recommended) - warning Enum 'samp_floor_enum' does not have recommended slot 'description' (recommended) - warning Enum 'door_type_metal_enum' does not have recommended slot 'description' (recommended) - warning Enum 'ceil_finish_mat_enum' does not have recommended slot 'description' (recommended) - warning Enum 'vis_media_enum' does not have recommended slot 'description' (recommended) - warning Enum 'room_loc_enum' does not have recommended slot 'description' (recommended) - warning Enum 'wall_const_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'surf_air_cont_enum' does not have recommended slot 'description' (recommended) - warning Enum 'room_condt_enum' does not have recommended slot 'description' (recommended) - warning Enum 'door_loc_enum' does not have recommended slot 'description' (recommended) - warning Enum 'specific_enum' does not have recommended slot 'description' (recommended) - warning Enum 'substructure_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'int_wall_cond_enum' does not have recommended slot 'description' (recommended) - warning Enum 'shading_device_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'window_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'door_cond_enum' does not have recommended slot 'description' (recommended) + warning Enum 'rel_samp_loc_enum' does not have recommended slot 'description' (recommended) warning Enum 'door_mat_enum' does not have recommended slot 'description' (recommended) - warning Enum 'light_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'room_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'wall_finish_mat_enum' does not have recommended slot 'description' (recommended) warning Enum 'quad_pos_enum' does not have recommended slot 'description' (recommended) - warning Enum 'indoor_space_enum' does not have recommended slot 'description' (recommended) - warning Enum 'season_use_enum' does not have recommended slot 'description' (recommended) - warning Enum 'floor_struc_enum' does not have recommended slot 'description' (recommended) - warning Enum 'train_stat_loc_enum' does not have recommended slot 'description' (recommended) - warning Enum 'ext_window_orient_enum' does not have recommended slot 'description' (recommended) warning Enum 'build_occup_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'rel_samp_loc_enum' does not have recommended slot 'description' (recommended) - warning Enum 'window_vert_pos_enum' does not have recommended slot 'description' (recommended) - warning Enum 'wall_loc_enum' does not have recommended slot 'description' (recommended) - warning Enum 'indoor_surf_enum' does not have recommended slot 'description' (recommended) - warning Enum 'train_stop_loc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'door_direct_enum' does not have recommended slot 'description' (recommended) + warning Enum 'ext_window_orient_enum' does not have recommended slot 'description' (recommended) + warning Enum 'vis_media_enum' does not have recommended slot 'description' (recommended) + warning Enum 'arch_struc_enum' does not have recommended slot 'description' (recommended) warning Enum 'water_feat_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'int_wall_cond_enum' does not have recommended slot 'description' (recommended) + warning Enum 'door_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'floor_struc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'window_cond_enum' does not have recommended slot 'description' (recommended) warning Enum 'wall_texture_enum' does not have recommended slot 'description' (recommended) + warning Enum 'door_cond_enum' does not have recommended slot 'description' (recommended) + warning Enum 'floor_cond_enum' does not have recommended slot 'description' (recommended) + warning Enum 'occup_document_enum' does not have recommended slot 'description' (recommended) + warning Enum 'ceil_texture_enum' does not have recommended slot 'description' (recommended) + warning Enum 'train_stat_loc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'train_stop_loc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'season_use_enum' does not have recommended slot 'description' (recommended) + warning Enum 'substructure_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'surf_material_enum' does not have recommended slot 'description' (recommended) + warning Enum 'light_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'window_horiz_pos_enum' does not have recommended slot 'description' (recommended) + warning Enum 'door_loc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'surf_air_cont_enum' does not have recommended slot 'description' (recommended) warning Enum 'wall_surf_treatment_enum' does not have recommended slot 'description' (recommended) - warning Enum 'arch_struc_enum' does not have recommended slot 'description' (recommended) - warning Enum 'ext_wall_orient_enum' does not have recommended slot 'description' (recommended) - warning Enum 'mech_struc_enum' does not have recommended slot 'description' (recommended) - warning Enum 'door_move_enum' does not have recommended slot 'description' (recommended) - warning Enum 'wall_finish_mat_enum' does not have recommended slot 'description' (recommended) - warning Enum 'door_direct_enum' does not have recommended slot 'description' (recommended) - warning Enum 'window_cover_enum' does not have recommended slot 'description' (recommended) + warning Enum 'door_type_wood_enum' does not have recommended slot 'description' (recommended) warning Enum 'heat_cool_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'door_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'floor_finish_mat_enum' does not have recommended slot 'description' (recommended) warning Enum 'train_line_enum' does not have recommended slot 'description' (recommended) - warning Enum 'room_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'ceil_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'building_setting_enum' does not have recommended slot 'description' (recommended) - warning Enum 'room_connected_enum' does not have recommended slot 'description' (recommended) + warning Enum 'shading_device_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'door_move_enum' does not have recommended slot 'description' (recommended) + warning Enum 'wall_const_type_enum' does not have recommended slot 'description' (recommended) warning Enum 'room_samp_pos_enum' does not have recommended slot 'description' (recommended) + warning Enum 'weekday_enum' does not have recommended slot 'description' (recommended) + warning Enum 'gender_restroom_enum' does not have recommended slot 'description' (recommended) warning Enum 'shading_device_cond_enum' does not have recommended slot 'description' (recommended) - warning Enum 'window_cond_enum' does not have recommended slot 'description' (recommended) - warning Enum 'door_comp_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'heat_deliv_loc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'window_mat_enum' does not have recommended slot 'description' (recommended) + warning Enum 'mech_struc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'room_loc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'furniture_enum' does not have recommended slot 'description' (recommended) warning Enum 'handidness_enum' does not have recommended slot 'description' (recommended) - warning Enum 'window_horiz_pos_enum' does not have recommended slot 'description' (recommended) - warning Enum 'floor_water_mold_enum' does not have recommended slot 'description' (recommended) - warning Enum 'window_loc_enum' does not have recommended slot 'description' (recommended) + warning Enum 'floor_finish_mat_enum' does not have recommended slot 'description' (recommended) + warning Enum 'door_comp_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'door_type_metal_enum' does not have recommended slot 'description' (recommended) warning Enum 'ceil_cond_enum' does not have recommended slot 'description' (recommended) - warning Enum 'filter_type_enum' does not have recommended slot 'description' (recommended) - warning Enum 'ceil_texture_enum' does not have recommended slot 'description' (recommended) + warning Enum 'building_setting_enum' does not have recommended slot 'description' (recommended) + warning Enum 'samp_collect_point_enum' does not have recommended slot 'description' (recommended) + warning Enum 'hcr_enum' does not have recommended slot 'description' (recommended) + warning Enum 'rel_to_oxygen_enum' does not have recommended slot 'description' (recommended) warning Enum 'hc_produced_enum' does not have recommended slot 'description' (recommended) warning Enum 'depos_env_enum' does not have recommended slot 'description' (recommended) - warning Enum 'samp_subtype_enum' does not have recommended slot 'description' (recommended) - warning Enum 'rel_to_oxygen_enum' does not have recommended slot 'description' (recommended) - warning Enum 'samp_collect_point_enum' does not have recommended slot 'description' (recommended) + warning Enum 'hcr_geol_age_enum' does not have recommended slot 'description' (recommended) warning Enum 'lithology_enum' does not have recommended slot 'description' (recommended) - warning Enum 'hcr_enum' does not have recommended slot 'description' (recommended) + warning Enum 'samp_subtype_enum' does not have recommended slot 'description' (recommended) warning Enum 'oxy_stat_samp_enum' does not have recommended slot 'description' (recommended) - warning Enum 'hcr_geol_age_enum' does not have recommended slot 'description' (recommended) - warning Enum 'sr_geol_age_enum' does not have recommended slot 'description' (recommended) - warning Enum 'sr_kerog_type_enum' does not have recommended slot 'description' (recommended) warning Enum 'sr_lithology_enum' does not have recommended slot 'description' (recommended) + warning Enum 'sr_kerog_type_enum' does not have recommended slot 'description' (recommended) warning Enum 'sr_dep_env_enum' does not have recommended slot 'description' (recommended) - warning Enum 'fao_class_enum' does not have recommended slot 'description' (recommended) + warning Enum 'sr_geol_age_enum' does not have recommended slot 'description' (recommended) warning Enum 'profile_position_enum' does not have recommended slot 'description' (recommended) - warning Enum 'biotic_relationship_enum' does not have recommended slot 'description' (recommended) warning Enum 'soil_horizon_enum' does not have recommended slot 'description' (recommended) - warning Enum 'drainage_class_enum' does not have recommended slot 'description' (recommended) - warning Enum 'tillage_enum' does not have recommended slot 'description' (recommended) + warning Enum 'fao_class_enum' does not have recommended slot 'description' (recommended) + warning Enum 'biotic_relationship_enum' does not have recommended slot 'description' (recommended) warning Enum 'cur_land_use_enum' does not have recommended slot 'description' (recommended) - warning Enum 'growth_habit_enum' does not have recommended slot 'description' (recommended) - warning Enum 'plant_sex_enum' does not have recommended slot 'description' (recommended) + warning Enum 'tillage_enum' does not have recommended slot 'description' (recommended) + warning Enum 'drainage_class_enum' does not have recommended slot 'description' (recommended) warning Enum 'biol_stat_enum' does not have recommended slot 'description' (recommended) warning Enum 'samp_capt_status_enum' does not have recommended slot 'description' (recommended) warning Enum 'samp_dis_stage_enum' does not have recommended slot 'description' (recommended) - warning Enum 'sediment_type_enum' does not have recommended slot 'description' (recommended) + warning Enum 'growth_habit_enum' does not have recommended slot 'description' (recommended) + warning Enum 'plant_sex_enum' does not have recommended slot 'description' (recommended) warning Enum 'tidal_stage_enum' does not have recommended slot 'description' (recommended) + warning Enum 'sediment_type_enum' does not have recommended slot 'description' (recommended) warning Enum 'host_sex_enum' does not have recommended slot 'description' (recommended) warning Subset 'environment' does not have recommended slot 'description' (recommended) warning Subset 'investigation' does not have recommended slot 'description' (recommended) @@ -115,10 +115,10 @@ warning Subset 'mixs extension' does not have recommended slot 'description' (recommended) error Slot 'type' not found on class 'AttributeValue' (no_invalid_slot_usage) warning Slot has name 'air_PM_concen' (standard_naming) - warning Slot has name 'investigation field' (standard_naming) - warning Slot has name 'nucleic acid sequence source field' (standard_naming) warning Slot has name 'core field' (standard_naming) + warning Slot has name 'nucleic acid sequence source field' (standard_naming) warning Slot has name 'environment field' (standard_naming) + warning Slot has name 'investigation field' (standard_naming) warning Permissible value of Enum 'BioticRelationshipEnum' has name 'free living' (standard_naming) warning Permissible value of Enum 'BioticRelationshipEnum' has name 'natural organic matter' (standard_naming) warning Permissible value of Enum 'DnaSampleFormatEnum' has name '10 mM Tris-HCl' (standard_naming) @@ -354,17 +354,50 @@ warning Permissible value of Enum 'SpecificEcosystemEnum' has name 'Tropical rainforest' (standard_naming) warning Permissible value of Enum 'SpecificEcosystemEnum' has name 'Unclassified' (standard_naming) warning Permissible value of Enum 'SpecificEcosystemEnum' has name 'Uranium contaminated' (standard_naming) - warning Enum has name 'floor_cond_enum' (standard_naming) - warning Permissible value of Enum 'floor_cond_enum' has name 'visible wear' (standard_naming) - warning Permissible value of Enum 'floor_cond_enum' has name 'needs repair' (standard_naming) - warning Enum has name 'occup_document_enum' (standard_naming) - warning Permissible value of Enum 'occup_document_enum' has name 'automated count' (standard_naming) - warning Permissible value of Enum 'occup_document_enum' has name 'manual count' (standard_naming) - warning Enum has name 'heat_deliv_loc_enum' (standard_naming) - warning Enum has name 'gender_restroom_enum' (standard_naming) - warning Permissible value of Enum 'gender_restroom_enum' has name 'all gender' (standard_naming) - warning Permissible value of Enum 'gender_restroom_enum' has name 'gender neurtral' (standard_naming) - warning Permissible value of Enum 'gender_restroom_enum' has name 'male and female' (standard_naming) + warning Enum has name 'ceil_type_enum' (standard_naming) + warning Permissible value of Enum 'ceil_type_enum' has name 'barrel-shaped' (standard_naming) + warning Enum has name 'floor_water_mold_enum' (standard_naming) + warning Permissible value of Enum 'floor_water_mold_enum' has name 'mold odor' (standard_naming) + warning Permissible value of Enum 'floor_water_mold_enum' has name 'wet floor' (standard_naming) + warning Permissible value of Enum 'floor_water_mold_enum' has name 'water stains' (standard_naming) + warning Permissible value of Enum 'floor_water_mold_enum' has name 'wall discoloration' (standard_naming) + warning Permissible value of Enum 'floor_water_mold_enum' has name 'floor discoloration' (standard_naming) + warning Permissible value of Enum 'floor_water_mold_enum' has name 'ceiling discoloration' (standard_naming) + warning Permissible value of Enum 'floor_water_mold_enum' has name 'peeling paint or wallpaper' (standard_naming) + warning Permissible value of Enum 'floor_water_mold_enum' has name 'bulging walls' (standard_naming) + warning Enum has name 'window_vert_pos_enum' (standard_naming) + warning Enum has name 'specific_enum' (standard_naming) + warning Permissible value of Enum 'specific_enum' has name 'as built' (standard_naming) + warning Enum has name 'ceil_finish_mat_enum' (standard_naming) + warning Permissible value of Enum 'ceil_finish_mat_enum' has name 'mineral fibre' (standard_naming) + warning Permissible value of Enum 'ceil_finish_mat_enum' has name 'PVC' (standard_naming) + warning Permissible value of Enum 'ceil_finish_mat_enum' has name 'mineral wool/calcium silicate' (standard_naming) + warning Enum has name 'indoor_surf_enum' (standard_naming) + warning Permissible value of Enum 'indoor_surf_enum' has name 'counter top' (standard_naming) + warning Permissible value of Enum 'indoor_surf_enum' has name 'vent cover' (standard_naming) + warning Enum has name 'wall_loc_enum' (standard_naming) + warning Enum has name 'window_type_enum' (standard_naming) + warning Permissible value of Enum 'window_type_enum' has name 'single-hung sash window' (standard_naming) + warning Permissible value of Enum 'window_type_enum' has name 'horizontal sash window' (standard_naming) + warning Permissible value of Enum 'window_type_enum' has name 'fixed window' (standard_naming) + warning Enum has name 'samp_floor_enum' (standard_naming) + warning Permissible value of Enum 'samp_floor_enum' has name '1st floor' (standard_naming) + warning Permissible value of Enum 'samp_floor_enum' has name '2nd floor' (standard_naming) + warning Enum has name 'filter_type_enum' (standard_naming) + warning Permissible value of Enum 'filter_type_enum' has name 'particulate air filter' (standard_naming) + warning Permissible value of Enum 'filter_type_enum' has name 'chemical air filter' (standard_naming) + warning Permissible value of Enum 'filter_type_enum' has name 'low-MERV pleated media' (standard_naming) + warning Permissible value of Enum 'filter_type_enum' has name 'HEPA' (standard_naming) + warning Permissible value of Enum 'filter_type_enum' has name 'gas-phase or ultraviolet air treatments' (standard_naming) + warning Enum has name 'window_cover_enum' (standard_naming) + warning Enum has name 'room_condt_enum' (standard_naming) + warning Permissible value of Enum 'room_condt_enum' has name 'visible wear' (standard_naming) + warning Permissible value of Enum 'room_condt_enum' has name 'needs repair' (standard_naming) + warning Permissible value of Enum 'room_condt_enum' has name 'visible signs of mold/mildew' (standard_naming) + warning Enum has name 'room_connected_enum' (standard_naming) + warning Permissible value of Enum 'room_connected_enum' has name 'conference room' (standard_naming) + warning Permissible value of Enum 'room_connected_enum' has name 'examining room' (standard_naming) + warning Permissible value of Enum 'room_connected_enum' has name 'mail room' (standard_naming) warning Enum has name 'build_docs_enum' (standard_naming) warning Permissible value of Enum 'build_docs_enum' has name 'building information model' (standard_naming) warning Permissible value of Enum 'build_docs_enum' has name 'commissioning report' (standard_naming) @@ -375,146 +408,72 @@ warning Permissible value of Enum 'build_docs_enum' has name 'maintenance plans' (standard_naming) warning Permissible value of Enum 'build_docs_enum' has name 'shop drawings' (standard_naming) warning Permissible value of Enum 'build_docs_enum' has name 'ventilation system' (standard_naming) - warning Enum has name 'door_type_wood_enum' (standard_naming) - warning Permissible value of Enum 'door_type_wood_enum' has name 'bettened and ledged' (standard_naming) - warning Permissible value of Enum 'door_type_wood_enum' has name 'ledged and braced' (standard_naming) - warning Permissible value of Enum 'door_type_wood_enum' has name 'ledged and framed' (standard_naming) - warning Permissible value of Enum 'door_type_wood_enum' has name 'ledged, braced and frame' (standard_naming) - warning Permissible value of Enum 'door_type_wood_enum' has name 'framed and paneled' (standard_naming) - warning Permissible value of Enum 'door_type_wood_enum' has name 'glashed or sash' (standard_naming) - warning Permissible value of Enum 'door_type_wood_enum' has name 'wire gauged' (standard_naming) - warning Enum has name 'surf_material_enum' (standard_naming) - warning Permissible value of Enum 'surf_material_enum' has name 'cinder blocks' (standard_naming) - warning Permissible value of Enum 'surf_material_enum' has name 'hay bales' (standard_naming) - warning Permissible value of Enum 'surf_material_enum' has name 'stainless steel' (standard_naming) - warning Enum has name 'furniture_enum' (standard_naming) + warning Enum has name 'indoor_space_enum' (standard_naming) + warning Permissible value of Enum 'indoor_space_enum' has name 'locker room' (standard_naming) + warning Enum has name 'window_loc_enum' (standard_naming) + warning Enum has name 'ext_wall_orient_enum' (standard_naming) warning Enum has name 'drawings_enum' (standard_naming) warning Permissible value of Enum 'drawings_enum' has name 'as built' (standard_naming) warning Permissible value of Enum 'drawings_enum' has name 'building navigation map' (standard_naming) warning Enum has name 'samp_weather_enum' (standard_naming) warning Permissible value of Enum 'samp_weather_enum' has name 'clear sky' (standard_naming) - warning Enum has name 'weekday_enum' (standard_naming) - warning Permissible value of Enum 'weekday_enum' has name 'Monday' (standard_naming) - warning Permissible value of Enum 'weekday_enum' has name 'Tuesday' (standard_naming) - warning Permissible value of Enum 'weekday_enum' has name 'Wednesday' (standard_naming) - warning Permissible value of Enum 'weekday_enum' has name 'Thursday' (standard_naming) - warning Permissible value of Enum 'weekday_enum' has name 'Friday' (standard_naming) - warning Permissible value of Enum 'weekday_enum' has name 'Saturday' (standard_naming) - warning Permissible value of Enum 'weekday_enum' has name 'Sunday' (standard_naming) - warning Enum has name 'window_mat_enum' (standard_naming) - warning Enum has name 'samp_floor_enum' (standard_naming) - warning Permissible value of Enum 'samp_floor_enum' has name '1st floor' (standard_naming) - warning Permissible value of Enum 'samp_floor_enum' has name '2nd floor' (standard_naming) - warning Enum has name 'door_type_metal_enum' (standard_naming) - warning Permissible value of Enum 'door_type_metal_enum' has name 'corrugated steel' (standard_naming) - warning Permissible value of Enum 'door_type_metal_enum' has name 'rolling shutters' (standard_naming) - warning Permissible value of Enum 'door_type_metal_enum' has name 'steel plate' (standard_naming) - warning Enum has name 'ceil_finish_mat_enum' (standard_naming) - warning Permissible value of Enum 'ceil_finish_mat_enum' has name 'mineral fibre' (standard_naming) - warning Permissible value of Enum 'ceil_finish_mat_enum' has name 'PVC' (standard_naming) - warning Permissible value of Enum 'ceil_finish_mat_enum' has name 'mineral wool/calcium silicate' (standard_naming) - warning Enum has name 'vis_media_enum' (standard_naming) - warning Permissible value of Enum 'vis_media_enum' has name 'commonly of the building' (standard_naming) - warning Permissible value of Enum 'vis_media_enum' has name 'site context (adjacent buildings, vegetation, terrain, streets)' (standard_naming) - warning Permissible value of Enum 'vis_media_enum' has name '3D scans' (standard_naming) - warning Enum has name 'room_loc_enum' (standard_naming) - warning Permissible value of Enum 'room_loc_enum' has name 'corner room' (standard_naming) - warning Permissible value of Enum 'room_loc_enum' has name 'interior room' (standard_naming) - warning Permissible value of Enum 'room_loc_enum' has name 'exterior wall' (standard_naming) - warning Enum has name 'wall_const_type_enum' (standard_naming) - warning Permissible value of Enum 'wall_const_type_enum' has name 'frame construction' (standard_naming) - warning Permissible value of Enum 'wall_const_type_enum' has name 'joisted masonry' (standard_naming) - warning Permissible value of Enum 'wall_const_type_enum' has name 'light noncombustible' (standard_naming) - warning Permissible value of Enum 'wall_const_type_enum' has name 'masonry noncombustible' (standard_naming) - warning Permissible value of Enum 'wall_const_type_enum' has name 'modified fire resistive' (standard_naming) - warning Permissible value of Enum 'wall_const_type_enum' has name 'fire resistive' (standard_naming) - warning Enum has name 'surf_air_cont_enum' (standard_naming) - warning Permissible value of Enum 'surf_air_cont_enum' has name 'organic matter' (standard_naming) - warning Permissible value of Enum 'surf_air_cont_enum' has name 'particulate matter' (standard_naming) - warning Permissible value of Enum 'surf_air_cont_enum' has name 'volatile organic compounds' (standard_naming) - warning Permissible value of Enum 'surf_air_cont_enum' has name 'biological contaminants' (standard_naming) - warning Enum has name 'room_condt_enum' (standard_naming) - warning Permissible value of Enum 'room_condt_enum' has name 'visible wear' (standard_naming) - warning Permissible value of Enum 'room_condt_enum' has name 'needs repair' (standard_naming) - warning Permissible value of Enum 'room_condt_enum' has name 'visible signs of mold/mildew' (standard_naming) - warning Enum has name 'door_loc_enum' (standard_naming) - warning Enum has name 'specific_enum' (standard_naming) - warning Permissible value of Enum 'specific_enum' has name 'as built' (standard_naming) - warning Enum has name 'substructure_type_enum' (standard_naming) - warning Permissible value of Enum 'substructure_type_enum' has name 'slab on grade' (standard_naming) - warning Enum has name 'int_wall_cond_enum' (standard_naming) - warning Permissible value of Enum 'int_wall_cond_enum' has name 'visible wear' (standard_naming) - warning Permissible value of Enum 'int_wall_cond_enum' has name 'needs repair' (standard_naming) - warning Enum has name 'shading_device_type_enum' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'bahama shutters' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'exterior roll blind' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'gambrel awning' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'hood awning' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'porchroller awning' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'sarasota shutters' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'slatted aluminum' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'solid aluminum awning' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'sun screen' (standard_naming) - warning Permissible value of Enum 'shading_device_type_enum' has name 'venetian awning' (standard_naming) - warning Enum has name 'window_type_enum' (standard_naming) - warning Permissible value of Enum 'window_type_enum' has name 'single-hung sash window' (standard_naming) - warning Permissible value of Enum 'window_type_enum' has name 'horizontal sash window' (standard_naming) - warning Permissible value of Enum 'window_type_enum' has name 'fixed window' (standard_naming) - warning Enum has name 'door_cond_enum' (standard_naming) - warning Permissible value of Enum 'door_cond_enum' has name 'needs repair' (standard_naming) - warning Permissible value of Enum 'door_cond_enum' has name 'visible wear' (standard_naming) + warning Enum has name 'rel_samp_loc_enum' (standard_naming) + warning Permissible value of Enum 'rel_samp_loc_enum' has name 'edge of car' (standard_naming) + warning Permissible value of Enum 'rel_samp_loc_enum' has name 'center of car' (standard_naming) + warning Permissible value of Enum 'rel_samp_loc_enum' has name 'under a seat' (standard_naming) warning Enum has name 'door_mat_enum' (standard_naming) warning Permissible value of Enum 'door_mat_enum' has name 'cellular PVC' (standard_naming) warning Permissible value of Enum 'door_mat_enum' has name 'engineered plastic' (standard_naming) warning Permissible value of Enum 'door_mat_enum' has name 'thermoplastic alloy' (standard_naming) warning Permissible value of Enum 'door_mat_enum' has name 'wood/plastic composite' (standard_naming) - warning Enum has name 'light_type_enum' (standard_naming) - warning Permissible value of Enum 'light_type_enum' has name 'natural light' (standard_naming) - warning Permissible value of Enum 'light_type_enum' has name 'electric light' (standard_naming) - warning Permissible value of Enum 'light_type_enum' has name 'desk lamp' (standard_naming) - warning Permissible value of Enum 'light_type_enum' has name 'flourescent lights' (standard_naming) + warning Enum has name 'room_type_enum' (standard_naming) + warning Permissible value of Enum 'room_type_enum' has name 'conference room' (standard_naming) + warning Permissible value of Enum 'room_type_enum' has name 'examining room' (standard_naming) + warning Permissible value of Enum 'room_type_enum' has name 'mail room' (standard_naming) + warning Permissible value of Enum 'room_type_enum' has name 'private office' (standard_naming) + warning Permissible value of Enum 'room_type_enum' has name 'open office' (standard_naming) + warning Permissible value of Enum 'room_type_enum' has name ',restroom' (standard_naming) + warning Permissible value of Enum 'room_type_enum' has name 'mechanical or electrical room' (standard_naming) + warning Permissible value of Enum 'room_type_enum' has name 'data center' (standard_naming) + warning Enum has name 'wall_finish_mat_enum' (standard_naming) + warning Permissible value of Enum 'wall_finish_mat_enum' has name 'gypsum plaster' (standard_naming) + warning Permissible value of Enum 'wall_finish_mat_enum' has name 'veneer plaster' (standard_naming) + warning Permissible value of Enum 'wall_finish_mat_enum' has name 'gypsum board' (standard_naming) + warning Permissible value of Enum 'wall_finish_mat_enum' has name 'stone facing' (standard_naming) + warning Permissible value of Enum 'wall_finish_mat_enum' has name 'acoustical treatment' (standard_naming) warning Enum has name 'quad_pos_enum' (standard_naming) warning Permissible value of Enum 'quad_pos_enum' has name 'North side' (standard_naming) warning Permissible value of Enum 'quad_pos_enum' has name 'West side' (standard_naming) warning Permissible value of Enum 'quad_pos_enum' has name 'South side' (standard_naming) warning Permissible value of Enum 'quad_pos_enum' has name 'East side' (standard_naming) - warning Enum has name 'indoor_space_enum' (standard_naming) - warning Permissible value of Enum 'indoor_space_enum' has name 'locker room' (standard_naming) - warning Enum has name 'season_use_enum' (standard_naming) - warning Permissible value of Enum 'season_use_enum' has name 'Spring' (standard_naming) - warning Permissible value of Enum 'season_use_enum' has name 'Summer' (standard_naming) - warning Permissible value of Enum 'season_use_enum' has name 'Fall' (standard_naming) - warning Permissible value of Enum 'season_use_enum' has name 'Winter' (standard_naming) - warning Enum has name 'floor_struc_enum' (standard_naming) - warning Permissible value of Enum 'floor_struc_enum' has name 'floating floor' (standard_naming) - warning Permissible value of Enum 'floor_struc_enum' has name 'glass floor' (standard_naming) - warning Permissible value of Enum 'floor_struc_enum' has name 'raised floor' (standard_naming) - warning Permissible value of Enum 'floor_struc_enum' has name 'sprung floor' (standard_naming) - warning Permissible value of Enum 'floor_struc_enum' has name 'wood-framed' (standard_naming) - warning Enum has name 'train_stat_loc_enum' (standard_naming) - warning Permissible value of Enum 'train_stat_loc_enum' has name 'south station above ground' (standard_naming) - warning Permissible value of Enum 'train_stat_loc_enum' has name 'south station underground' (standard_naming) - warning Permissible value of Enum 'train_stat_loc_enum' has name 'south station amtrak' (standard_naming) - warning Permissible value of Enum 'train_stat_loc_enum' has name 'forest hills' (standard_naming) - warning Enum has name 'ext_window_orient_enum' (standard_naming) warning Enum has name 'build_occup_type_enum' (standard_naming) warning Permissible value of Enum 'build_occup_type_enum' has name 'low rise' (standard_naming) warning Permissible value of Enum 'build_occup_type_enum' has name 'high rise' (standard_naming) warning Permissible value of Enum 'build_occup_type_enum' has name 'wood framed' (standard_naming) warning Permissible value of Enum 'build_occup_type_enum' has name 'health care' (standard_naming) warning Permissible value of Enum 'build_occup_type_enum' has name 'sports complex' (standard_naming) - warning Enum has name 'rel_samp_loc_enum' (standard_naming) - warning Permissible value of Enum 'rel_samp_loc_enum' has name 'edge of car' (standard_naming) - warning Permissible value of Enum 'rel_samp_loc_enum' has name 'center of car' (standard_naming) - warning Permissible value of Enum 'rel_samp_loc_enum' has name 'under a seat' (standard_naming) - warning Enum has name 'window_vert_pos_enum' (standard_naming) - warning Enum has name 'wall_loc_enum' (standard_naming) - warning Enum has name 'indoor_surf_enum' (standard_naming) - warning Permissible value of Enum 'indoor_surf_enum' has name 'counter top' (standard_naming) - warning Permissible value of Enum 'indoor_surf_enum' has name 'vent cover' (standard_naming) - warning Enum has name 'train_stop_loc_enum' (standard_naming) + warning Enum has name 'door_direct_enum' (standard_naming) + warning Enum has name 'ext_window_orient_enum' (standard_naming) + warning Enum has name 'vis_media_enum' (standard_naming) + warning Permissible value of Enum 'vis_media_enum' has name 'commonly of the building' (standard_naming) + warning Permissible value of Enum 'vis_media_enum' has name 'site context (adjacent buildings, vegetation, terrain, streets)' (standard_naming) + warning Permissible value of Enum 'vis_media_enum' has name '3D scans' (standard_naming) + warning Enum has name 'arch_struc_enum' (standard_naming) warning Enum has name 'water_feat_type_enum' (standard_naming) warning Permissible value of Enum 'water_feat_type_enum' has name 'standing feature' (standard_naming) + warning Enum has name 'int_wall_cond_enum' (standard_naming) + warning Permissible value of Enum 'int_wall_cond_enum' has name 'visible wear' (standard_naming) + warning Permissible value of Enum 'int_wall_cond_enum' has name 'needs repair' (standard_naming) + warning Enum has name 'door_type_enum' (standard_naming) + warning Enum has name 'floor_struc_enum' (standard_naming) + warning Permissible value of Enum 'floor_struc_enum' has name 'floating floor' (standard_naming) + warning Permissible value of Enum 'floor_struc_enum' has name 'glass floor' (standard_naming) + warning Permissible value of Enum 'floor_struc_enum' has name 'raised floor' (standard_naming) + warning Permissible value of Enum 'floor_struc_enum' has name 'sprung floor' (standard_naming) + warning Permissible value of Enum 'floor_struc_enum' has name 'wood-framed' (standard_naming) + warning Enum has name 'window_cond_enum' (standard_naming) + warning Permissible value of Enum 'window_cond_enum' has name 'needs repair' (standard_naming) + warning Permissible value of Enum 'window_cond_enum' has name 'visible wear' (standard_naming) warning Enum has name 'wall_texture_enum' (standard_naming) warning Permissible value of Enum 'wall_texture_enum' has name 'crows feet' (standard_naming) warning Permissible value of Enum 'wall_texture_enum' has name 'crows-foot stomp' (standard_naming) @@ -526,53 +485,92 @@ warning Permissible value of Enum 'wall_texture_enum' has name 'Santa-Fe texture' (standard_naming) warning Permissible value of Enum 'wall_texture_enum' has name 'skip trowel' (standard_naming) warning Permissible value of Enum 'wall_texture_enum' has name 'stomp knockdown' (standard_naming) + warning Enum has name 'door_cond_enum' (standard_naming) + warning Permissible value of Enum 'door_cond_enum' has name 'needs repair' (standard_naming) + warning Permissible value of Enum 'door_cond_enum' has name 'visible wear' (standard_naming) + warning Enum has name 'floor_cond_enum' (standard_naming) + warning Permissible value of Enum 'floor_cond_enum' has name 'visible wear' (standard_naming) + warning Permissible value of Enum 'floor_cond_enum' has name 'needs repair' (standard_naming) + warning Enum has name 'occup_document_enum' (standard_naming) + warning Permissible value of Enum 'occup_document_enum' has name 'automated count' (standard_naming) + warning Permissible value of Enum 'occup_document_enum' has name 'manual count' (standard_naming) + warning Enum has name 'ceil_texture_enum' (standard_naming) + warning Permissible value of Enum 'ceil_texture_enum' has name 'crows feet' (standard_naming) + warning Permissible value of Enum 'ceil_texture_enum' has name 'crows-foot stomp' (standard_naming) + warning Permissible value of Enum 'ceil_texture_enum' has name 'double skip' (standard_naming) + warning Permissible value of Enum 'ceil_texture_enum' has name 'hawk and trowel' (standard_naming) + warning Permissible value of Enum 'ceil_texture_enum' has name 'orange peel' (standard_naming) + warning Permissible value of Enum 'ceil_texture_enum' has name 'rosebud stomp' (standard_naming) + warning Permissible value of Enum 'ceil_texture_enum' has name 'Santa-Fe texture' (standard_naming) + warning Permissible value of Enum 'ceil_texture_enum' has name 'skip trowel' (standard_naming) + warning Permissible value of Enum 'ceil_texture_enum' has name 'stomp knockdown' (standard_naming) + warning Enum has name 'train_stat_loc_enum' (standard_naming) + warning Permissible value of Enum 'train_stat_loc_enum' has name 'south station above ground' (standard_naming) + warning Permissible value of Enum 'train_stat_loc_enum' has name 'south station underground' (standard_naming) + warning Permissible value of Enum 'train_stat_loc_enum' has name 'south station amtrak' (standard_naming) + warning Permissible value of Enum 'train_stat_loc_enum' has name 'forest hills' (standard_naming) + warning Enum has name 'train_stop_loc_enum' (standard_naming) + warning Enum has name 'season_use_enum' (standard_naming) + warning Permissible value of Enum 'season_use_enum' has name 'Spring' (standard_naming) + warning Permissible value of Enum 'season_use_enum' has name 'Summer' (standard_naming) + warning Permissible value of Enum 'season_use_enum' has name 'Fall' (standard_naming) + warning Permissible value of Enum 'season_use_enum' has name 'Winter' (standard_naming) + warning Enum has name 'substructure_type_enum' (standard_naming) + warning Permissible value of Enum 'substructure_type_enum' has name 'slab on grade' (standard_naming) + warning Enum has name 'surf_material_enum' (standard_naming) + warning Permissible value of Enum 'surf_material_enum' has name 'cinder blocks' (standard_naming) + warning Permissible value of Enum 'surf_material_enum' has name 'hay bales' (standard_naming) + warning Permissible value of Enum 'surf_material_enum' has name 'stainless steel' (standard_naming) + warning Enum has name 'light_type_enum' (standard_naming) + warning Permissible value of Enum 'light_type_enum' has name 'natural light' (standard_naming) + warning Permissible value of Enum 'light_type_enum' has name 'electric light' (standard_naming) + warning Permissible value of Enum 'light_type_enum' has name 'desk lamp' (standard_naming) + warning Permissible value of Enum 'light_type_enum' has name 'flourescent lights' (standard_naming) + warning Enum has name 'window_horiz_pos_enum' (standard_naming) + warning Enum has name 'door_loc_enum' (standard_naming) + warning Enum has name 'surf_air_cont_enum' (standard_naming) + warning Permissible value of Enum 'surf_air_cont_enum' has name 'organic matter' (standard_naming) + warning Permissible value of Enum 'surf_air_cont_enum' has name 'particulate matter' (standard_naming) + warning Permissible value of Enum 'surf_air_cont_enum' has name 'volatile organic compounds' (standard_naming) + warning Permissible value of Enum 'surf_air_cont_enum' has name 'biological contaminants' (standard_naming) warning Enum has name 'wall_surf_treatment_enum' (standard_naming) warning Permissible value of Enum 'wall_surf_treatment_enum' has name 'wall paper' (standard_naming) warning Permissible value of Enum 'wall_surf_treatment_enum' has name 'no treatment' (standard_naming) - warning Enum has name 'arch_struc_enum' (standard_naming) - warning Enum has name 'ext_wall_orient_enum' (standard_naming) - warning Enum has name 'mech_struc_enum' (standard_naming) - warning Enum has name 'door_move_enum' (standard_naming) - warning Permissible value of Enum 'door_move_enum' has name 'rolling shutter' (standard_naming) - warning Enum has name 'wall_finish_mat_enum' (standard_naming) - warning Permissible value of Enum 'wall_finish_mat_enum' has name 'gypsum plaster' (standard_naming) - warning Permissible value of Enum 'wall_finish_mat_enum' has name 'veneer plaster' (standard_naming) - warning Permissible value of Enum 'wall_finish_mat_enum' has name 'gypsum board' (standard_naming) - warning Permissible value of Enum 'wall_finish_mat_enum' has name 'stone facing' (standard_naming) - warning Permissible value of Enum 'wall_finish_mat_enum' has name 'acoustical treatment' (standard_naming) - warning Enum has name 'door_direct_enum' (standard_naming) - warning Enum has name 'window_cover_enum' (standard_naming) + warning Enum has name 'door_type_wood_enum' (standard_naming) + warning Permissible value of Enum 'door_type_wood_enum' has name 'bettened and ledged' (standard_naming) + warning Permissible value of Enum 'door_type_wood_enum' has name 'ledged and braced' (standard_naming) + warning Permissible value of Enum 'door_type_wood_enum' has name 'ledged and framed' (standard_naming) + warning Permissible value of Enum 'door_type_wood_enum' has name 'ledged, braced and frame' (standard_naming) + warning Permissible value of Enum 'door_type_wood_enum' has name 'framed and paneled' (standard_naming) + warning Permissible value of Enum 'door_type_wood_enum' has name 'glashed or sash' (standard_naming) + warning Permissible value of Enum 'door_type_wood_enum' has name 'wire gauged' (standard_naming) warning Enum has name 'heat_cool_type_enum' (standard_naming) warning Permissible value of Enum 'heat_cool_type_enum' has name 'radiant system' (standard_naming) warning Permissible value of Enum 'heat_cool_type_enum' has name 'heat pump' (standard_naming) warning Permissible value of Enum 'heat_cool_type_enum' has name 'forced air system' (standard_naming) warning Permissible value of Enum 'heat_cool_type_enum' has name 'steam forced heat' (standard_naming) warning Permissible value of Enum 'heat_cool_type_enum' has name 'wood stove' (standard_naming) - warning Enum has name 'door_type_enum' (standard_naming) - warning Enum has name 'floor_finish_mat_enum' (standard_naming) - warning Permissible value of Enum 'floor_finish_mat_enum' has name 'wood strip or parquet' (standard_naming) - warning Permissible value of Enum 'floor_finish_mat_enum' has name 'laminate wood' (standard_naming) - warning Permissible value of Enum 'floor_finish_mat_enum' has name 'vinyl composition tile' (standard_naming) - warning Permissible value of Enum 'floor_finish_mat_enum' has name 'sheet vinyl' (standard_naming) - warning Permissible value of Enum 'floor_finish_mat_enum' has name 'clear finish' (standard_naming) - warning Permissible value of Enum 'floor_finish_mat_enum' has name 'none or unfinished' (standard_naming) warning Enum has name 'train_line_enum' (standard_naming) - warning Enum has name 'room_type_enum' (standard_naming) - warning Permissible value of Enum 'room_type_enum' has name 'conference room' (standard_naming) - warning Permissible value of Enum 'room_type_enum' has name 'examining room' (standard_naming) - warning Permissible value of Enum 'room_type_enum' has name 'mail room' (standard_naming) - warning Permissible value of Enum 'room_type_enum' has name 'private office' (standard_naming) - warning Permissible value of Enum 'room_type_enum' has name 'open office' (standard_naming) - warning Permissible value of Enum 'room_type_enum' has name ',restroom' (standard_naming) - warning Permissible value of Enum 'room_type_enum' has name 'mechanical or electrical room' (standard_naming) - warning Permissible value of Enum 'room_type_enum' has name 'data center' (standard_naming) - warning Enum has name 'ceil_type_enum' (standard_naming) - warning Permissible value of Enum 'ceil_type_enum' has name 'barrel-shaped' (standard_naming) - warning Enum has name 'building_setting_enum' (standard_naming) - warning Enum has name 'room_connected_enum' (standard_naming) - warning Permissible value of Enum 'room_connected_enum' has name 'conference room' (standard_naming) - warning Permissible value of Enum 'room_connected_enum' has name 'examining room' (standard_naming) - warning Permissible value of Enum 'room_connected_enum' has name 'mail room' (standard_naming) + warning Enum has name 'shading_device_type_enum' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'bahama shutters' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'exterior roll blind' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'gambrel awning' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'hood awning' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'porchroller awning' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'sarasota shutters' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'slatted aluminum' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'solid aluminum awning' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'sun screen' (standard_naming) + warning Permissible value of Enum 'shading_device_type_enum' has name 'venetian awning' (standard_naming) + warning Enum has name 'door_move_enum' (standard_naming) + warning Permissible value of Enum 'door_move_enum' has name 'rolling shutter' (standard_naming) + warning Enum has name 'wall_const_type_enum' (standard_naming) + warning Permissible value of Enum 'wall_const_type_enum' has name 'frame construction' (standard_naming) + warning Permissible value of Enum 'wall_const_type_enum' has name 'joisted masonry' (standard_naming) + warning Permissible value of Enum 'wall_const_type_enum' has name 'light noncombustible' (standard_naming) + warning Permissible value of Enum 'wall_const_type_enum' has name 'masonry noncombustible' (standard_naming) + warning Permissible value of Enum 'wall_const_type_enum' has name 'modified fire resistive' (standard_naming) + warning Permissible value of Enum 'wall_const_type_enum' has name 'fire resistive' (standard_naming) warning Enum has name 'room_samp_pos_enum' (standard_naming) warning Permissible value of Enum 'room_samp_pos_enum' has name 'north corner' (standard_naming) warning Permissible value of Enum 'room_samp_pos_enum' has name 'south corner' (standard_naming) @@ -582,48 +580,65 @@ warning Permissible value of Enum 'room_samp_pos_enum' has name 'northwest corner' (standard_naming) warning Permissible value of Enum 'room_samp_pos_enum' has name 'southeast corner' (standard_naming) warning Permissible value of Enum 'room_samp_pos_enum' has name 'southwest corner' (standard_naming) + warning Enum has name 'weekday_enum' (standard_naming) + warning Permissible value of Enum 'weekday_enum' has name 'Monday' (standard_naming) + warning Permissible value of Enum 'weekday_enum' has name 'Tuesday' (standard_naming) + warning Permissible value of Enum 'weekday_enum' has name 'Wednesday' (standard_naming) + warning Permissible value of Enum 'weekday_enum' has name 'Thursday' (standard_naming) + warning Permissible value of Enum 'weekday_enum' has name 'Friday' (standard_naming) + warning Permissible value of Enum 'weekday_enum' has name 'Saturday' (standard_naming) + warning Permissible value of Enum 'weekday_enum' has name 'Sunday' (standard_naming) + warning Enum has name 'gender_restroom_enum' (standard_naming) + warning Permissible value of Enum 'gender_restroom_enum' has name 'all gender' (standard_naming) + warning Permissible value of Enum 'gender_restroom_enum' has name 'gender neurtral' (standard_naming) + warning Permissible value of Enum 'gender_restroom_enum' has name 'male and female' (standard_naming) warning Enum has name 'shading_device_cond_enum' (standard_naming) warning Permissible value of Enum 'shading_device_cond_enum' has name 'needs repair' (standard_naming) warning Permissible value of Enum 'shading_device_cond_enum' has name 'visible wear' (standard_naming) - warning Enum has name 'window_cond_enum' (standard_naming) - warning Permissible value of Enum 'window_cond_enum' has name 'needs repair' (standard_naming) - warning Permissible value of Enum 'window_cond_enum' has name 'visible wear' (standard_naming) - warning Enum has name 'door_comp_type_enum' (standard_naming) - warning Permissible value of Enum 'door_comp_type_enum' has name 'metal covered' (standard_naming) + warning Enum has name 'heat_deliv_loc_enum' (standard_naming) + warning Enum has name 'window_mat_enum' (standard_naming) + warning Enum has name 'mech_struc_enum' (standard_naming) + warning Enum has name 'room_loc_enum' (standard_naming) + warning Permissible value of Enum 'room_loc_enum' has name 'corner room' (standard_naming) + warning Permissible value of Enum 'room_loc_enum' has name 'interior room' (standard_naming) + warning Permissible value of Enum 'room_loc_enum' has name 'exterior wall' (standard_naming) + warning Enum has name 'furniture_enum' (standard_naming) warning Enum has name 'handidness_enum' (standard_naming) warning Permissible value of Enum 'handidness_enum' has name 'left handedness' (standard_naming) warning Permissible value of Enum 'handidness_enum' has name 'mixed-handedness' (standard_naming) warning Permissible value of Enum 'handidness_enum' has name 'right handedness' (standard_naming) - warning Enum has name 'window_horiz_pos_enum' (standard_naming) - warning Enum has name 'floor_water_mold_enum' (standard_naming) - warning Permissible value of Enum 'floor_water_mold_enum' has name 'mold odor' (standard_naming) - warning Permissible value of Enum 'floor_water_mold_enum' has name 'wet floor' (standard_naming) - warning Permissible value of Enum 'floor_water_mold_enum' has name 'water stains' (standard_naming) - warning Permissible value of Enum 'floor_water_mold_enum' has name 'wall discoloration' (standard_naming) - warning Permissible value of Enum 'floor_water_mold_enum' has name 'floor discoloration' (standard_naming) - warning Permissible value of Enum 'floor_water_mold_enum' has name 'ceiling discoloration' (standard_naming) - warning Permissible value of Enum 'floor_water_mold_enum' has name 'peeling paint or wallpaper' (standard_naming) - warning Permissible value of Enum 'floor_water_mold_enum' has name 'bulging walls' (standard_naming) - warning Enum has name 'window_loc_enum' (standard_naming) + warning Enum has name 'floor_finish_mat_enum' (standard_naming) + warning Permissible value of Enum 'floor_finish_mat_enum' has name 'wood strip or parquet' (standard_naming) + warning Permissible value of Enum 'floor_finish_mat_enum' has name 'laminate wood' (standard_naming) + warning Permissible value of Enum 'floor_finish_mat_enum' has name 'vinyl composition tile' (standard_naming) + warning Permissible value of Enum 'floor_finish_mat_enum' has name 'sheet vinyl' (standard_naming) + warning Permissible value of Enum 'floor_finish_mat_enum' has name 'clear finish' (standard_naming) + warning Permissible value of Enum 'floor_finish_mat_enum' has name 'none or unfinished' (standard_naming) + warning Enum has name 'door_comp_type_enum' (standard_naming) + warning Permissible value of Enum 'door_comp_type_enum' has name 'metal covered' (standard_naming) + warning Enum has name 'door_type_metal_enum' (standard_naming) + warning Permissible value of Enum 'door_type_metal_enum' has name 'corrugated steel' (standard_naming) + warning Permissible value of Enum 'door_type_metal_enum' has name 'rolling shutters' (standard_naming) + warning Permissible value of Enum 'door_type_metal_enum' has name 'steel plate' (standard_naming) warning Enum has name 'ceil_cond_enum' (standard_naming) warning Permissible value of Enum 'ceil_cond_enum' has name 'visible wear' (standard_naming) warning Permissible value of Enum 'ceil_cond_enum' has name 'needs repair' (standard_naming) - warning Enum has name 'filter_type_enum' (standard_naming) - warning Permissible value of Enum 'filter_type_enum' has name 'particulate air filter' (standard_naming) - warning Permissible value of Enum 'filter_type_enum' has name 'chemical air filter' (standard_naming) - warning Permissible value of Enum 'filter_type_enum' has name 'low-MERV pleated media' (standard_naming) - warning Permissible value of Enum 'filter_type_enum' has name 'HEPA' (standard_naming) - warning Permissible value of Enum 'filter_type_enum' has name 'gas-phase or ultraviolet air treatments' (standard_naming) - warning Enum has name 'ceil_texture_enum' (standard_naming) - warning Permissible value of Enum 'ceil_texture_enum' has name 'crows feet' (standard_naming) - warning Permissible value of Enum 'ceil_texture_enum' has name 'crows-foot stomp' (standard_naming) - warning Permissible value of Enum 'ceil_texture_enum' has name 'double skip' (standard_naming) - warning Permissible value of Enum 'ceil_texture_enum' has name 'hawk and trowel' (standard_naming) - warning Permissible value of Enum 'ceil_texture_enum' has name 'orange peel' (standard_naming) - warning Permissible value of Enum 'ceil_texture_enum' has name 'rosebud stomp' (standard_naming) - warning Permissible value of Enum 'ceil_texture_enum' has name 'Santa-Fe texture' (standard_naming) - warning Permissible value of Enum 'ceil_texture_enum' has name 'skip trowel' (standard_naming) - warning Permissible value of Enum 'ceil_texture_enum' has name 'stomp knockdown' (standard_naming) + warning Enum has name 'building_setting_enum' (standard_naming) + warning Enum has name 'samp_collect_point_enum' (standard_naming) + warning Permissible value of Enum 'samp_collect_point_enum' has name 'test well' (standard_naming) + warning Permissible value of Enum 'samp_collect_point_enum' has name 'drilling rig' (standard_naming) + warning Permissible value of Enum 'samp_collect_point_enum' has name 'storage tank' (standard_naming) + warning Enum has name 'hcr_enum' (standard_naming) + warning Permissible value of Enum 'hcr_enum' has name 'Oil Reservoir' (standard_naming) + warning Permissible value of Enum 'hcr_enum' has name 'Gas Reservoir' (standard_naming) + warning Permissible value of Enum 'hcr_enum' has name 'Oil Sand' (standard_naming) + warning Permissible value of Enum 'hcr_enum' has name 'Coalbed' (standard_naming) + warning Permissible value of Enum 'hcr_enum' has name 'Shale' (standard_naming) + warning Permissible value of Enum 'hcr_enum' has name 'Tight Oil Reservoir' (standard_naming) + warning Permissible value of Enum 'hcr_enum' has name 'Tight Gas Reservoir' (standard_naming) + warning Enum has name 'rel_to_oxygen_enum' (standard_naming) + warning Permissible value of Enum 'rel_to_oxygen_enum' has name 'obligate aerobe' (standard_naming) + warning Permissible value of Enum 'rel_to_oxygen_enum' has name 'obligate anaerobe' (standard_naming) warning Enum has name 'hc_produced_enum' (standard_naming) warning Permissible value of Enum 'hc_produced_enum' has name 'Oil' (standard_naming) warning Permissible value of Enum 'hc_produced_enum' has name 'Gas-Condensate' (standard_naming) @@ -646,39 +661,6 @@ warning Permissible value of Enum 'depos_env_enum' has name 'Other - Evaporite' (standard_naming) warning Permissible value of Enum 'depos_env_enum' has name 'Other - Glacial' (standard_naming) warning Permissible value of Enum 'depos_env_enum' has name 'Other - Volcanic' (standard_naming) - warning Enum has name 'samp_subtype_enum' (standard_naming) - warning Permissible value of Enum 'samp_subtype_enum' has name 'oil phase' (standard_naming) - warning Permissible value of Enum 'samp_subtype_enum' has name 'water phase' (standard_naming) - warning Permissible value of Enum 'samp_subtype_enum' has name 'not applicable' (standard_naming) - warning Enum has name 'rel_to_oxygen_enum' (standard_naming) - warning Permissible value of Enum 'rel_to_oxygen_enum' has name 'obligate aerobe' (standard_naming) - warning Permissible value of Enum 'rel_to_oxygen_enum' has name 'obligate anaerobe' (standard_naming) - warning Enum has name 'samp_collect_point_enum' (standard_naming) - warning Permissible value of Enum 'samp_collect_point_enum' has name 'test well' (standard_naming) - warning Permissible value of Enum 'samp_collect_point_enum' has name 'drilling rig' (standard_naming) - warning Permissible value of Enum 'samp_collect_point_enum' has name 'storage tank' (standard_naming) - warning Enum has name 'lithology_enum' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Basement' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Chalk' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Chert' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Coal' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Conglomerate' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Diatomite' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Dolomite' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Limestone' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Sandstone' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Shale' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Siltstone' (standard_naming) - warning Permissible value of Enum 'lithology_enum' has name 'Volcanic' (standard_naming) - warning Enum has name 'hcr_enum' (standard_naming) - warning Permissible value of Enum 'hcr_enum' has name 'Oil Reservoir' (standard_naming) - warning Permissible value of Enum 'hcr_enum' has name 'Gas Reservoir' (standard_naming) - warning Permissible value of Enum 'hcr_enum' has name 'Oil Sand' (standard_naming) - warning Permissible value of Enum 'hcr_enum' has name 'Coalbed' (standard_naming) - warning Permissible value of Enum 'hcr_enum' has name 'Shale' (standard_naming) - warning Permissible value of Enum 'hcr_enum' has name 'Tight Oil Reservoir' (standard_naming) - warning Permissible value of Enum 'hcr_enum' has name 'Tight Gas Reservoir' (standard_naming) - warning Enum has name 'oxy_stat_samp_enum' (standard_naming) warning Enum has name 'hcr_geol_age_enum' (standard_naming) warning Permissible value of Enum 'hcr_geol_age_enum' has name 'Archean' (standard_naming) warning Permissible value of Enum 'hcr_geol_age_enum' has name 'Cambrian' (standard_naming) @@ -697,6 +679,39 @@ warning Permissible value of Enum 'hcr_geol_age_enum' has name 'Proterozoic' (standard_naming) warning Permissible value of Enum 'hcr_geol_age_enum' has name 'Silurian' (standard_naming) warning Permissible value of Enum 'hcr_geol_age_enum' has name 'Triassic' (standard_naming) + warning Enum has name 'lithology_enum' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Basement' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Chalk' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Chert' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Coal' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Conglomerate' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Diatomite' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Dolomite' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Limestone' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Sandstone' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Shale' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Siltstone' (standard_naming) + warning Permissible value of Enum 'lithology_enum' has name 'Volcanic' (standard_naming) + warning Enum has name 'samp_subtype_enum' (standard_naming) + warning Permissible value of Enum 'samp_subtype_enum' has name 'oil phase' (standard_naming) + warning Permissible value of Enum 'samp_subtype_enum' has name 'water phase' (standard_naming) + warning Permissible value of Enum 'samp_subtype_enum' has name 'not applicable' (standard_naming) + warning Enum has name 'oxy_stat_samp_enum' (standard_naming) + warning Enum has name 'sr_lithology_enum' (standard_naming) + warning Permissible value of Enum 'sr_lithology_enum' has name 'Clastic' (standard_naming) + warning Permissible value of Enum 'sr_lithology_enum' has name 'Carbonate' (standard_naming) + warning Permissible value of Enum 'sr_lithology_enum' has name 'Coal' (standard_naming) + warning Permissible value of Enum 'sr_lithology_enum' has name 'Biosilicieous' (standard_naming) + warning Enum has name 'sr_kerog_type_enum' (standard_naming) + warning Permissible value of Enum 'sr_kerog_type_enum' has name 'Type I' (standard_naming) + warning Permissible value of Enum 'sr_kerog_type_enum' has name 'Type II' (standard_naming) + warning Permissible value of Enum 'sr_kerog_type_enum' has name 'Type III' (standard_naming) + warning Permissible value of Enum 'sr_kerog_type_enum' has name 'Type IV' (standard_naming) + warning Enum has name 'sr_dep_env_enum' (standard_naming) + warning Permissible value of Enum 'sr_dep_env_enum' has name 'Lacustine' (standard_naming) + warning Permissible value of Enum 'sr_dep_env_enum' has name 'Fluvioldeltaic' (standard_naming) + warning Permissible value of Enum 'sr_dep_env_enum' has name 'Fluviomarine' (standard_naming) + warning Permissible value of Enum 'sr_dep_env_enum' has name 'Marine' (standard_naming) warning Enum has name 'sr_geol_age_enum' (standard_naming) warning Permissible value of Enum 'sr_geol_age_enum' has name 'Archean' (standard_naming) warning Permissible value of Enum 'sr_geol_age_enum' has name 'Cambrian' (standard_naming) @@ -715,21 +730,15 @@ warning Permissible value of Enum 'sr_geol_age_enum' has name 'Proterozoic' (standard_naming) warning Permissible value of Enum 'sr_geol_age_enum' has name 'Silurian' (standard_naming) warning Permissible value of Enum 'sr_geol_age_enum' has name 'Triassic' (standard_naming) - warning Enum has name 'sr_kerog_type_enum' (standard_naming) - warning Permissible value of Enum 'sr_kerog_type_enum' has name 'Type I' (standard_naming) - warning Permissible value of Enum 'sr_kerog_type_enum' has name 'Type II' (standard_naming) - warning Permissible value of Enum 'sr_kerog_type_enum' has name 'Type III' (standard_naming) - warning Permissible value of Enum 'sr_kerog_type_enum' has name 'Type IV' (standard_naming) - warning Enum has name 'sr_lithology_enum' (standard_naming) - warning Permissible value of Enum 'sr_lithology_enum' has name 'Clastic' (standard_naming) - warning Permissible value of Enum 'sr_lithology_enum' has name 'Carbonate' (standard_naming) - warning Permissible value of Enum 'sr_lithology_enum' has name 'Coal' (standard_naming) - warning Permissible value of Enum 'sr_lithology_enum' has name 'Biosilicieous' (standard_naming) - warning Enum has name 'sr_dep_env_enum' (standard_naming) - warning Permissible value of Enum 'sr_dep_env_enum' has name 'Lacustine' (standard_naming) - warning Permissible value of Enum 'sr_dep_env_enum' has name 'Fluvioldeltaic' (standard_naming) - warning Permissible value of Enum 'sr_dep_env_enum' has name 'Fluviomarine' (standard_naming) - warning Permissible value of Enum 'sr_dep_env_enum' has name 'Marine' (standard_naming) + warning Enum has name 'profile_position_enum' (standard_naming) + warning Enum has name 'soil_horizon_enum' (standard_naming) + warning Permissible value of Enum 'soil_horizon_enum' has name 'O horizon' (standard_naming) + warning Permissible value of Enum 'soil_horizon_enum' has name 'A horizon' (standard_naming) + warning Permissible value of Enum 'soil_horizon_enum' has name 'E horizon' (standard_naming) + warning Permissible value of Enum 'soil_horizon_enum' has name 'B horizon' (standard_naming) + warning Permissible value of Enum 'soil_horizon_enum' has name 'C horizon' (standard_naming) + warning Permissible value of Enum 'soil_horizon_enum' has name 'R layer' (standard_naming) + warning Permissible value of Enum 'soil_horizon_enum' has name 'Permafrost' (standard_naming) warning Enum has name 'fao_class_enum' (standard_naming) warning Permissible value of Enum 'fao_class_enum' has name 'Acrisols' (standard_naming) warning Permissible value of Enum 'fao_class_enum' has name 'Andosols' (standard_naming) @@ -757,28 +766,8 @@ warning Permissible value of Enum 'fao_class_enum' has name 'Solonetz' (standard_naming) warning Permissible value of Enum 'fao_class_enum' has name 'Vertisols' (standard_naming) warning Permissible value of Enum 'fao_class_enum' has name 'Yermosols' (standard_naming) - warning Enum has name 'profile_position_enum' (standard_naming) warning Enum has name 'biotic_relationship_enum' (standard_naming) warning Permissible value of Enum 'biotic_relationship_enum' has name 'free living' (standard_naming) - warning Enum has name 'soil_horizon_enum' (standard_naming) - warning Permissible value of Enum 'soil_horizon_enum' has name 'O horizon' (standard_naming) - warning Permissible value of Enum 'soil_horizon_enum' has name 'A horizon' (standard_naming) - warning Permissible value of Enum 'soil_horizon_enum' has name 'E horizon' (standard_naming) - warning Permissible value of Enum 'soil_horizon_enum' has name 'B horizon' (standard_naming) - warning Permissible value of Enum 'soil_horizon_enum' has name 'C horizon' (standard_naming) - warning Permissible value of Enum 'soil_horizon_enum' has name 'R layer' (standard_naming) - warning Permissible value of Enum 'soil_horizon_enum' has name 'Permafrost' (standard_naming) - warning Enum has name 'drainage_class_enum' (standard_naming) - warning Permissible value of Enum 'drainage_class_enum' has name 'very poorly' (standard_naming) - warning Permissible value of Enum 'drainage_class_enum' has name 'somewhat poorly' (standard_naming) - warning Permissible value of Enum 'drainage_class_enum' has name 'moderately well' (standard_naming) - warning Permissible value of Enum 'drainage_class_enum' has name 'excessively drained' (standard_naming) - warning Enum has name 'tillage_enum' (standard_naming) - warning Permissible value of Enum 'tillage_enum' has name 'cutting disc' (standard_naming) - warning Permissible value of Enum 'tillage_enum' has name 'ridge till' (standard_naming) - warning Permissible value of Enum 'tillage_enum' has name 'strip tillage' (standard_naming) - warning Permissible value of Enum 'tillage_enum' has name 'zonal tillage' (standard_naming) - warning Permissible value of Enum 'tillage_enum' has name 'disc plough' (standard_naming) warning Enum has name 'cur_land_use_enum' (standard_naming) warning Permissible value of Enum 'cur_land_use_enum' has name 'industrial areas' (standard_naming) warning Permissible value of Enum 'cur_land_use_enum' has name 'roads/railroads' (standard_naming) @@ -806,6 +795,29 @@ warning Permissible value of Enum 'cur_land_use_enum' has name 'rainforest (evergreen forest receiving greater than 406 cm annual rainfall)' (standard_naming) warning Permissible value of Enum 'cur_land_use_enum' has name 'swamp (permanent or semi-permanent water body dominated by woody plants)' (standard_naming) warning Permissible value of Enum 'cur_land_use_enum' has name 'crop trees (nuts,fruit,christmas trees,nursery trees)' (standard_naming) + warning Enum has name 'tillage_enum' (standard_naming) + warning Permissible value of Enum 'tillage_enum' has name 'cutting disc' (standard_naming) + warning Permissible value of Enum 'tillage_enum' has name 'ridge till' (standard_naming) + warning Permissible value of Enum 'tillage_enum' has name 'strip tillage' (standard_naming) + warning Permissible value of Enum 'tillage_enum' has name 'zonal tillage' (standard_naming) + warning Permissible value of Enum 'tillage_enum' has name 'disc plough' (standard_naming) + warning Enum has name 'drainage_class_enum' (standard_naming) + warning Permissible value of Enum 'drainage_class_enum' has name 'very poorly' (standard_naming) + warning Permissible value of Enum 'drainage_class_enum' has name 'somewhat poorly' (standard_naming) + warning Permissible value of Enum 'drainage_class_enum' has name 'moderately well' (standard_naming) + warning Permissible value of Enum 'drainage_class_enum' has name 'excessively drained' (standard_naming) + warning Enum has name 'biol_stat_enum' (standard_naming) + warning Permissible value of Enum 'biol_stat_enum' has name 'semi-natural' (standard_naming) + warning Permissible value of Enum 'biol_stat_enum' has name 'inbred line' (standard_naming) + warning Permissible value of Enum 'biol_stat_enum' has name 'breeder's line' (standard_naming) + warning Permissible value of Enum 'biol_stat_enum' has name 'clonal selection' (standard_naming) + warning Enum has name 'samp_capt_status_enum' (standard_naming) + warning Permissible value of Enum 'samp_capt_status_enum' has name 'active surveillance in response to an outbreak' (standard_naming) + warning Permissible value of Enum 'samp_capt_status_enum' has name 'active surveillance not initiated by an outbreak' (standard_naming) + warning Permissible value of Enum 'samp_capt_status_enum' has name 'farm sample' (standard_naming) + warning Permissible value of Enum 'samp_capt_status_enum' has name 'market sample' (standard_naming) + warning Enum has name 'samp_dis_stage_enum' (standard_naming) + warning Permissible value of Enum 'samp_dis_stage_enum' has name 'growth and reproduction' (standard_naming) warning Enum has name 'growth_habit_enum' (standard_naming) warning Permissible value of Enum 'growth_habit_enum' has name 'semi-erect' (standard_naming) warning Enum has name 'plant_sex_enum' (standard_naming) @@ -838,24 +850,12 @@ warning Permissible value of Enum 'plant_sex_enum' has name 'Trimonoecious' (standard_naming) warning Permissible value of Enum 'plant_sex_enum' has name 'Trioecious' (standard_naming) warning Permissible value of Enum 'plant_sex_enum' has name 'Unisexual' (standard_naming) - warning Enum has name 'biol_stat_enum' (standard_naming) - warning Permissible value of Enum 'biol_stat_enum' has name 'semi-natural' (standard_naming) - warning Permissible value of Enum 'biol_stat_enum' has name 'inbred line' (standard_naming) - warning Permissible value of Enum 'biol_stat_enum' has name 'breeder's line' (standard_naming) - warning Permissible value of Enum 'biol_stat_enum' has name 'clonal selection' (standard_naming) - warning Enum has name 'samp_capt_status_enum' (standard_naming) - warning Permissible value of Enum 'samp_capt_status_enum' has name 'active surveillance in response to an outbreak' (standard_naming) - warning Permissible value of Enum 'samp_capt_status_enum' has name 'active surveillance not initiated by an outbreak' (standard_naming) - warning Permissible value of Enum 'samp_capt_status_enum' has name 'farm sample' (standard_naming) - warning Permissible value of Enum 'samp_capt_status_enum' has name 'market sample' (standard_naming) - warning Enum has name 'samp_dis_stage_enum' (standard_naming) - warning Permissible value of Enum 'samp_dis_stage_enum' has name 'growth and reproduction' (standard_naming) - warning Enum has name 'sediment_type_enum' (standard_naming) warning Enum has name 'tidal_stage_enum' (standard_naming) warning Permissible value of Enum 'tidal_stage_enum' has name 'low tide' (standard_naming) warning Permissible value of Enum 'tidal_stage_enum' has name 'ebb tide' (standard_naming) warning Permissible value of Enum 'tidal_stage_enum' has name 'flood tide' (standard_naming) warning Permissible value of Enum 'tidal_stage_enum' has name 'high tide' (standard_naming) + warning Enum has name 'sediment_type_enum' (standard_naming) warning Enum has name 'host_sex_enum' (standard_naming) ✖ Found 858 problems in 1 schema diff --git a/sheets_and_friends/yaml_out/with_modifications.yaml b/sheets_and_friends/yaml_out/with_modifications.yaml index b203ed52..4a4187bc 100644 --- a/sheets_and_friends/yaml_out/with_modifications.yaml +++ b/sheets_and_friends/yaml_out/with_modifications.yaml @@ -1302,34 +1302,122 @@ enums: other: text: other description: placeholder PV descr - floor_cond_enum: - name: floor_cond_enum + ceil_type_enum: + name: ceil_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - occup_document_enum: - name: occup_document_enum + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + floor_water_mold_enum: + name: floor_water_mold_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - automated count: - text: automated count - estimate: - text: estimate - manual count: - text: manual count - videos: - text: videos - heat_deliv_loc_enum: - name: heat_deliv_loc_enum + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + specific_enum: + name: specific_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + photos: + text: photos + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard + metal: + text: metal + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + indoor_surf_enum: + name: indoor_surf_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + cabinet: + text: cabinet + ceiling: + text: ceiling + counter top: + text: counter top + door: + text: door + shelving: + text: shelving + vent cover: + text: vent cover + window: + text: window + wall: + text: wall + wall_loc_enum: + name: wall_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: north: @@ -1340,22 +1428,96 @@ enums: text: east west: text: west - gender_restroom_enum: - name: gender_restroom_enum + window_type_enum: + name: window_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - all gender: - text: all gender - female: - text: female - gender neurtral: - text: gender neurtral - male: - text: male - male and female: - text: male and female - unisex: - text: unisex + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + samp_floor_enum: + name: samp_floor_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + filter_type_enum: + name: filter_type_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + window_cover_enum: + name: window_cover_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + room_condt_enum: + name: room_condt_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + visible signs of mold/mildew: + text: visible signs of mold/mildew + room_connected_enum: + name: room_connected_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + office: + text: office + stairwell: + text: stairwell build_docs_enum: name: build_docs_enum from_schema: https://example.com/nmdc_submission_schema @@ -1386,74 +1548,58 @@ enums: text: ventilation system windows: text: windows - door_type_wood_enum: - name: door_type_wood_enum + indoor_space_enum: + name: indoor_space_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - bettened and ledged: - text: bettened and ledged - battened: - text: battened - ledged and braced: - text: ledged and braced - ledged and framed: - text: ledged and framed - ledged, braced and frame: - text: ledged, braced and frame - framed and paneled: - text: framed and paneled - glashed or sash: - text: glashed or sash - flush: - text: flush - louvered: - text: louvered - wire gauged: - text: wire gauged - surf_material_enum: - name: surf_material_enum + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator + window_loc_enum: + name: window_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass - metal: - text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile - vinyl: - text: vinyl - wood: - text: wood - furniture_enum: - name: furniture_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + ext_wall_orient_enum: + name: ext_wall_orient_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest drawings_enum: name: drawings_enum from_schema: https://example.com/nmdc_submission_schema @@ -1496,170 +1642,174 @@ enums: text: sunny windy: text: windy - weekday_enum: - name: weekday_enum + rel_samp_loc_enum: + name: rel_samp_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday - window_mat_enum: - name: window_mat_enum + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat + door_mat_enum: + name: door_mat_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - clad: - text: clad + aluminum: + text: aluminum + cellular PVC: + text: cellular PVC + engineered plastic: + text: engineered plastic + fiberboard: + text: fiberboard fiberglass: text: fiberglass metal: text: metal + thermoplastic alloy: + text: thermoplastic alloy vinyl: text: vinyl wood: text: wood - samp_floor_enum: - name: samp_floor_enum + wood/plastic composite: + text: wood/plastic composite + room_type_enum: + name: room_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + private office: + text: private office + open office: + text: open office + stairwell: + text: stairwell + ',restroom': + text: ',restroom' lobby: text: lobby - door_type_metal_enum: - name: door_type_metal_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate - ceil_finish_mat_enum: - name: ceil_finish_mat_enum + vestibule: + text: vestibule + mechanical or electrical room: + text: mechanical or electrical room + data center: + text: data center + laboratory_wet: + text: laboratory_wet + laboratory_dry: + text: laboratory_dry + gymnasium: + text: gymnasium + natatorium: + text: natatorium + auditorium: + text: auditorium + lockers: + text: lockers + cafe: + text: cafe + warehouse: + text: warehouse + wall_finish_mat_enum: + name: wall_finish_mat_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment wood: text: wood - vis_media_enum: - name: vis_media_enum + metal: + text: metal + masonry: + text: masonry + quad_pos_enum: + name: quad_pos_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - photos: - text: photos - videos: - text: videos - commonly of the building: - text: commonly of the building - site context (adjacent buildings, vegetation, terrain, streets): - text: site context (adjacent buildings, vegetation, terrain, streets) - interiors: - text: interiors - equipment: - text: equipment - 3D scans: - text: 3D scans - room_loc_enum: - name: room_loc_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - wall_const_type_enum: - name: wall_const_type_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - surf_air_cont_enum: - name: surf_air_cont_enum + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + build_occup_type_enum: + name: build_occup_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - room_condt_enum: - name: room_condt_enum + office: + text: office + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + door_direct_enum: + name: door_direct_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - visible signs of mold/mildew: - text: visible signs of mold/mildew - door_loc_enum: - name: door_loc_enum + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + ext_window_orient_enum: + name: ext_window_orient_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: north: @@ -1670,32 +1820,56 @@ enums: text: east west: text: west - specific_enum: - name: specific_enum + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + vis_media_enum: + name: vis_media_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design photos: text: photos - substructure_type_enum: - name: substructure_type_enum + videos: + text: videos + commonly of the building: + text: commonly of the building + site context (adjacent buildings, vegetation, terrain, streets): + text: site context (adjacent buildings, vegetation, terrain, streets) + interiors: + text: interiors + equipment: + text: equipment + 3D scans: + text: 3D scans + arch_struc_enum: + name: arch_struc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement + building: + text: building + shed: + text: shed + home: + text: home + water_feat_type_enum: + name: water_feat_type_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall int_wall_cond_enum: name: int_wall_cond_enum from_schema: https://example.com/nmdc_submission_schema @@ -1710,44 +1884,80 @@ enums: text: damaged rupture: text: rupture - shading_device_type_enum: - name: shading_device_type_enum + door_type_enum: + name: door_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - bahama shutters: - text: bahama shutters - exterior roll blind: - text: exterior roll blind - gambrel awning: - text: gambrel awning - hood awning: - text: hood awning - porchroller awning: - text: porchroller awning - sarasota shutters: - text: sarasota shutters - slatted aluminum: - text: slatted aluminum - solid aluminum awning: - text: solid aluminum awning - sun screen: - text: sun screen - tree: - text: tree - trellis: - text: trellis - venetian awning: - text: venetian awning - window_type_enum: - name: window_type_enum + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + floor_struc_enum: + name: floor_struc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + window_cond_enum: + name: window_cond_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + wall_texture_enum: + name: wall_texture_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl door_cond_enum: name: door_cond_enum from_schema: https://example.com/nmdc_submission_schema @@ -1762,76 +1972,86 @@ enums: text: rupture visible wear: text: visible wear - door_mat_enum: - name: door_mat_enum + floor_cond_enum: + name: floor_cond_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - aluminum: - text: aluminum - cellular PVC: - text: cellular PVC - engineered plastic: - text: engineered plastic - fiberboard: - text: fiberboard - fiberglass: - text: fiberglass - metal: - text: metal - thermoplastic alloy: - text: thermoplastic alloy - vinyl: - text: vinyl - wood: - text: wood - wood/plastic composite: - text: wood/plastic composite - light_type_enum: - name: light_type_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + occup_document_enum: + name: occup_document_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - quad_pos_enum: - name: quad_pos_enum + automated count: + text: automated count + estimate: + text: estimate + manual count: + text: manual count + videos: + text: videos + ceil_texture_enum: + name: ceil_texture_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - indoor_space_enum: - name: indoor_space_enum + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + train_stat_loc_enum: + name: train_stat_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - bedroom: - text: bedroom - office: - text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside + train_stop_loc_enum: + name: train_stop_loc_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + end: + text: end + mid: + text: mid + downtown: + text: downtown season_use_enum: name: season_use_enum from_schema: https://example.com/nmdc_submission_schema @@ -1844,40 +2064,76 @@ enums: text: Fall Winter: text: Winter - floor_struc_enum: - name: floor_struc_enum + substructure_type_enum: + name: substructure_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + surf_material_enum: + name: surf_material_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks concrete: text: concrete - train_stat_loc_enum: - name: train_stat_loc_enum + hay bales: + text: hay bales + glass: + text: glass + metal: + text: metal + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile + vinyl: + text: vinyl + wood: + text: wood + light_type_enum: + name: light_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside - ext_window_orient_enum: - name: ext_window_orient_enum + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + window_horiz_pos_enum: + name: window_horiz_pos_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + left: + text: left + middle: + text: middle + right: + text: right + door_loc_enum: + name: door_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: north: @@ -1888,184 +2144,222 @@ enums: text: east west: text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - build_occup_type_enum: - name: build_occup_type_enum + surf_air_cont_enum: + name: surf_air_cont_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - rel_samp_loc_enum: - name: rel_samp_loc_enum + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + wall_surf_treatment_enum: + name: wall_surf_treatment_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - window_vert_pos_enum: - name: window_vert_pos_enum + painted: + text: painted + wall paper: + text: wall paper + no treatment: + text: no treatment + paneling: + text: paneling + stucco: + text: stucco + fabric: + text: fabric + door_type_wood_enum: + name: door_type_wood_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high - wall_loc_enum: - name: wall_loc_enum + bettened and ledged: + text: bettened and ledged + battened: + text: battened + ledged and braced: + text: ledged and braced + ledged and framed: + text: ledged and framed + ledged, braced and frame: + text: ledged, braced and frame + framed and paneled: + text: framed and paneled + glashed or sash: + text: glashed or sash + flush: + text: flush + louvered: + text: louvered + wire gauged: + text: wire gauged + heat_cool_type_enum: + name: heat_cool_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - indoor_surf_enum: - name: indoor_surf_enum + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + train_line_enum: + name: train_line_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - cabinet: - text: cabinet - ceiling: - text: ceiling - counter top: - text: counter top - door: - text: door - shelving: - text: shelving - vent cover: - text: vent cover - window: - text: window - wall: - text: wall - train_stop_loc_enum: - name: train_stop_loc_enum + red: + text: red + green: + text: green + orange: + text: orange + shading_device_type_enum: + name: shading_device_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - end: - text: end - mid: - text: mid - downtown: - text: downtown - water_feat_type_enum: - name: water_feat_type_enum + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning + door_move_enum: + name: door_move_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - wall_texture_enum: - name: wall_texture_enum + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging + wall_const_type_enum: + name: wall_const_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - ? '' - : text: '' - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - wall_surf_treatment_enum: - name: wall_surf_treatment_enum + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive + room_samp_pos_enum: + name: room_samp_pos_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + weekday_enum: + name: weekday_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - painted: - text: painted - wall paper: - text: wall paper - no treatment: - text: no treatment - paneling: - text: paneling - stucco: - text: stucco - fabric: - text: fabric - arch_struc_enum: - name: arch_struc_enum + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + gender_restroom_enum: + name: gender_restroom_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - ext_wall_orient_enum: - name: ext_wall_orient_enum + all gender: + text: all gender + female: + text: female + gender neurtral: + text: gender neurtral + male: + text: male + male and female: + text: male and female + unisex: + text: unisex + shading_device_cond_enum: + name: shading_device_cond_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + heat_deliv_loc_enum: + name: heat_deliv_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: north: @@ -2076,14 +2370,20 @@ enums: text: east west: text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest + window_mat_enum: + name: window_mat_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + clad: + text: clad + fiberglass: + text: fiberglass + metal: + text: metal + vinyl: + text: vinyl + wood: + text: wood mech_struc_enum: name: mech_struc_enum from_schema: https://example.com/nmdc_submission_schema @@ -2106,92 +2406,38 @@ enums: text: car bus: text: bus - door_move_enum: - name: door_move_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging - wall_finish_mat_enum: - name: wall_finish_mat_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood - metal: - text: metal - masonry: - text: masonry - door_direct_enum: - name: door_direct_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - window_cover_enum: - name: window_cover_enum + room_loc_enum: + name: room_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - heat_cool_type_enum: - name: heat_cool_type_enum + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + furniture_enum: + name: furniture_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove - door_type_enum: - name: door_type_enum + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks + handidness_enum: + name: handidness_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - composite: - text: composite - metal: - text: metal - wooden: - text: wooden + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness floor_finish_mat_enum: name: floor_finish_mat_enum from_schema: https://example.com/nmdc_submission_schema @@ -2232,176 +2478,6 @@ enums: text: paint none or unfinished: text: none or unfinished - train_line_enum: - name: train_line_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - room_type_enum: - name: room_type_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - private office: - text: private office - open office: - text: open office - stairwell: - text: stairwell - ',restroom': - text: ',restroom' - lobby: - text: lobby - vestibule: - text: vestibule - mechanical or electrical room: - text: mechanical or electrical room - data center: - text: data center - laboratory_wet: - text: laboratory_wet - laboratory_dry: - text: laboratory_dry - gymnasium: - text: gymnasium - natatorium: - text: natatorium - auditorium: - text: auditorium - lockers: - text: lockers - cafe: - text: cafe - warehouse: - text: warehouse - ceil_type_enum: - name: ceil_type_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - building_setting_enum: - name: building_setting_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - room_connected_enum: - name: room_connected_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - office: - text: office - stairwell: - text: stairwell - room_samp_pos_enum: - name: room_samp_pos_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center - shading_device_cond_enum: - name: shading_device_cond_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - window_cond_enum: - name: window_cond_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear door_comp_type_enum: name: door_comp_type_enum from_schema: https://example.com/nmdc_submission_schema @@ -2414,62 +2490,20 @@ enums: text: sliding telescopic: text: telescopic - handidness_enum: - name: handidness_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - window_horiz_pos_enum: - name: window_horiz_pos_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - left: - text: left - middle: - text: middle - right: - text: right - floor_water_mold_enum: - name: floor_water_mold_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - window_loc_enum: - name: window_loc_enum + door_type_metal_enum: + name: door_type_metal_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate ceil_cond_enum: name: ceil_cond_enum from_schema: https://example.com/nmdc_submission_schema @@ -2484,52 +2518,74 @@ enums: text: damaged rupture: text: rupture - filter_type_enum: - name: filter_type_enum + building_setting_enum: + name: building_setting_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - ceil_texture_enum: - name: ceil_texture_enum + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + samp_collect_point_enum: + name: samp_collect_point_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other + hcr_enum: + name: hcr_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir + other: + text: other + rel_to_oxygen_enum: + name: rel_to_oxygen_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + aerobe: + text: aerobe + anaerobe: + text: anaerobe + facultative: + text: facultative + microaerophilic: + text: microaerophilic + microanaerobe: + text: microanaerobe + obligate aerobe: + text: obligate aerobe + obligate anaerobe: + text: obligate anaerobe hc_produced_enum: name: hc_produced_enum from_schema: https://example.com/nmdc_submission_schema @@ -2582,54 +2638,44 @@ enums: text: Other - Volcanic other: text: other - samp_subtype_enum: - name: samp_subtype_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other - rel_to_oxygen_enum: - name: rel_to_oxygen_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - aerobe: - text: aerobe - anaerobe: - text: anaerobe - facultative: - text: facultative - microaerophilic: - text: microaerophilic - microanaerobe: - text: microanaerobe - obligate aerobe: - text: obligate aerobe - obligate anaerobe: - text: obligate anaerobe - samp_collect_point_enum: - name: samp_collect_point_enum + hcr_geol_age_enum: + name: hcr_geol_age_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic other: text: other lithology_enum: @@ -2662,24 +2708,18 @@ enums: text: Volcanic other: text: other - hcr_enum: - name: hcr_enum + samp_subtype_enum: + name: samp_subtype_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable other: text: other oxy_stat_samp_enum: @@ -2692,44 +2732,46 @@ enums: text: anaerobic other: text: other - hcr_geol_age_enum: - name: hcr_geol_age_enum + sr_lithology_enum: + name: sr_lithology_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous + other: + text: other + sr_kerog_type_enum: + name: sr_kerog_type_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + sr_dep_env_enum: + name: sr_dep_env_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine other: text: other sr_geol_age_enum: @@ -2772,48 +2814,38 @@ enums: text: Triassic other: text: other - sr_kerog_type_enum: - name: sr_kerog_type_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV - other: - text: other - sr_lithology_enum: - name: sr_lithology_enum + profile_position_enum: + name: profile_position_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous - other: - text: other - sr_dep_env_enum: - name: sr_dep_env_enum + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope + soil_horizon_enum: + name: soil_horizon_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost fao_class_enum: name: fao_class_enum from_schema: https://example.com/nmdc_submission_schema @@ -2870,20 +2902,6 @@ enums: text: Vertisols Yermosols: text: Yermosols - profile_position_enum: - name: profile_position_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope biotic_relationship_enum: name: biotic_relationship_enum from_schema: https://example.com/nmdc_submission_schema @@ -2896,62 +2914,6 @@ enums: text: commensal symbiont: text: symbiont - soil_horizon_enum: - name: soil_horizon_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - drainage_class_enum: - name: drainage_class_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - very poorly: - text: very poorly - poorly: - text: poorly - somewhat poorly: - text: somewhat poorly - moderately well: - text: moderately well - well: - text: well - excessively drained: - text: excessively drained - tillage_enum: - name: tillage_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough cur_land_use_enum: name: cur_land_use_enum from_schema: https://example.com/nmdc_submission_schema @@ -3027,6 +2989,94 @@ enums: text: swamp (permanent or semi-permanent water body dominated by woody plants) crop trees (nuts,fruit,christmas trees,nursery trees): text: crop trees (nuts,fruit,christmas trees,nursery trees) + tillage_enum: + name: tillage_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + drainage_class_enum: + name: drainage_class_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + very poorly: + text: very poorly + poorly: + text: poorly + somewhat poorly: + text: somewhat poorly + moderately well: + text: moderately well + well: + text: well + excessively drained: + text: excessively drained + biol_stat_enum: + name: biol_stat_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + samp_capt_status_enum: + name: samp_capt_status_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample + other: + text: other + samp_dis_stage_enum: + name: samp_dis_stage_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + dissemination: + text: dissemination + growth and reproduction: + text: growth and reproduction + infection: + text: infection + inoculation: + text: inoculation + penetration: + text: penetration + other: + text: other growth_habit_enum: name: growth_habit_enum from_schema: https://example.com/nmdc_submission_schema @@ -3101,56 +3151,18 @@ enums: text: Trioecious Unisexual: text: Unisexual - biol_stat_enum: - name: biol_stat_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - samp_capt_status_enum: - name: samp_capt_status_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample - other: - text: other - samp_dis_stage_enum: - name: samp_dis_stage_enum + tidal_stage_enum: + name: tidal_stage_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - dissemination: - text: dissemination - growth and reproduction: - text: growth and reproduction - infection: - text: infection - inoculation: - text: inoculation - penetration: - text: penetration - other: - text: other + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide sediment_type_enum: name: sediment_type_enum from_schema: https://example.com/nmdc_submission_schema @@ -3163,18 +3175,6 @@ enums: text: hydrogenous lithogenous: text: lithogenous - tidal_stage_enum: - name: tidal_stage_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide host_sex_enum: name: host_sex_enum from_schema: https://example.com/nmdc_submission_schema @@ -3237,7 +3237,9 @@ slots: - Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable. examples: - - value: 2021-04-15, 2021-04 and 2021 are all acceptable. + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://example.com/nmdc_submission_schema rank: 2 string_serialization: '{date, arbitrary precision}' @@ -3253,7 +3255,8 @@ slots: comments: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema rank: 1 string_serialization: '{time, seconds optional}' @@ -3270,7 +3273,8 @@ slots: comments: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema rank: 3 string_serialization: '{time, seconds optional}' @@ -4141,7 +4145,9 @@ slots: - Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable. examples: - - value: 2021-04-15, 2021-04 and 2021 are all acceptable. + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://example.com/nmdc_submission_schema rank: 4 string_serialization: '{date, arbitrary precision}' @@ -4157,7 +4163,8 @@ slots: comments: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema rank: 5 string_serialization: '{time, seconds optional}' @@ -15177,71 +15184,31 @@ slots: - zinc is_a: attribute range: QuantityValue - has_raw_value: - name: has_raw_value - description: The value that was specified for an annotation in raw form, i.e. - a string. E.g. "2 cm" or "2-4 cm" - from_schema: https://example.com/nmdc_submission_schema - domain: AttributeValue - multivalued: false - range: string - was_generated_by: - name: was_generated_by - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:wasGeneratedBy - range: Activity - investigation field: - name: investigation field - description: field describing aspect of the investigation/study to which the sample - belongs - from_schema: https://example.com/nmdc_submission_schema - abstract: true - started_at_time: - name: started_at_time - notes: - - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ - It may not be complete, but it is good enough for now.' + has_unit: + name: has_unit + description: Links a QuantityValue to a unit from_schema: https://example.com/nmdc_submission_schema + aliases: + - scale mappings: - - prov:startedAtTime - range: datetime - pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ - nucleic acid sequence source field: - name: nucleic acid sequence source field - from_schema: https://example.com/nmdc_submission_schema - abstract: true - name: - name: name - description: A human readable label for an entity + - qud:unit + - schema:unitCode + range: unit + description: + name: description + description: a human-readable description of a thing from_schema: https://example.com/nmdc_submission_schema + slot_uri: dcterms:description range: string - core field: - name: core field - description: basic fields - from_schema: https://example.com/nmdc_submission_schema - abstract: true - has_maximum_numeric_value: - name: has_maximum_numeric_value - description: The maximum value part, expressed as number, of the quantity value - when the value covers a range. - from_schema: https://example.com/nmdc_submission_schema - is_a: has_numeric_value - language: - name: language - description: Should use ISO 639-1 code e.g. "en", "fr" - from_schema: https://example.com/nmdc_submission_schema - range: language code - ended_at_time: - name: ended_at_time - notes: - - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ - It may not be complete, but it is good enough for now.' + longitude: + name: longitude + description: longitude from_schema: https://example.com/nmdc_submission_schema mappings: - - prov:endedAtTime - range: datetime - pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ + - schema:longitude + domain: GeolocationValue + slot_uri: wgs84:long + range: decimal degree term: name: term description: pointer to an ontology class @@ -15251,33 +15218,32 @@ slots: domain: ControlledTermValue range: OntologyClass inlined: true + has_raw_value: + name: has_raw_value + description: The value that was specified for an annotation in raw form, i.e. + a string. E.g. "2 cm" or "2-4 cm" + from_schema: https://example.com/nmdc_submission_schema + domain: AttributeValue + multivalued: false + range: string + core field: + name: core field + description: basic fields + from_schema: https://example.com/nmdc_submission_schema + abstract: true alternative_identifiers: name: alternative_identifiers description: A list of alternative identifiers for the entity. from_schema: https://example.com/nmdc_submission_schema multivalued: true range: string - has_numeric_value: - name: has_numeric_value - description: Links a quantity value to a number - from_schema: https://example.com/nmdc_submission_schema - mappings: - - qud:quantityValue - - schema:value - multivalued: false - range: float - acted_on_behalf_of: - name: acted_on_behalf_of - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:actedOnBehalfOf - range: Agent - has_minimum_numeric_value: - name: has_minimum_numeric_value - description: The minimum value part, expressed as number, of the quantity value - when the value covers a range. + gold_path_field: + name: gold_path_field + description: This is a grouping for any of the gold path fields from_schema: https://example.com/nmdc_submission_schema - is_a: has_numeric_value + is_a: attribute + abstract: true + range: string id: name: id description: A unique identifier for a thing. Must be either a CURIE shorthand @@ -15295,12 +15261,28 @@ slots: description: https://github.com/microbiomedata/nmdc-schema/pull/499#discussion_r1018499248 from_schema: https://example.com/nmdc_submission_schema identifier: true + acted_on_behalf_of: + name: acted_on_behalf_of + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:actedOnBehalfOf + range: Agent + nucleic acid sequence source field: + name: nucleic acid sequence source field + from_schema: https://example.com/nmdc_submission_schema + abstract: true was_associated_with: name: was_associated_with from_schema: https://example.com/nmdc_submission_schema mappings: - prov:wasAssociatedWith range: Agent + has_maximum_numeric_value: + name: has_maximum_numeric_value + description: The maximum value part, expressed as number, of the quantity value + when the value covers a range. + from_schema: https://example.com/nmdc_submission_schema + is_a: has_numeric_value attribute: name: attribute description: 'A attribute of a biosample. Examples: depth, habitat, material. @@ -15313,38 +15295,17 @@ slots: - key - characteristic abstract: true - was_informed_by: - name: was_informed_by - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:wasInformedBy - range: Activity - longitude: - name: longitude - description: longitude + used: + name: used from_schema: https://example.com/nmdc_submission_schema mappings: - - schema:longitude - domain: GeolocationValue - slot_uri: wgs84:long - range: decimal degree - gold_path_field: - name: gold_path_field - description: This is a grouping for any of the gold path fields + - prov:used + domain: Activity + name: + name: name + description: A human readable label for an entity from_schema: https://example.com/nmdc_submission_schema - is_a: attribute - abstract: true range: string - has_unit: - name: has_unit - description: Links a QuantityValue to a unit - from_schema: https://example.com/nmdc_submission_schema - aliases: - - scale - mappings: - - qud:unit - - schema:unitCode - range: unit latitude: name: latitude description: latitude @@ -15354,23 +15315,69 @@ slots: domain: GeolocationValue slot_uri: wgs84:lat range: decimal degree - used: - name: used + language: + name: language + description: Should use ISO 639-1 code e.g. "en", "fr" + from_schema: https://example.com/nmdc_submission_schema + range: language code + has_numeric_value: + name: has_numeric_value + description: Links a quantity value to a number from_schema: https://example.com/nmdc_submission_schema mappings: - - prov:used - domain: Activity + - qud:quantityValue + - schema:value + multivalued: false + range: float + ended_at_time: + name: ended_at_time + notes: + - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ + It may not be complete, but it is good enough for now.' + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:endedAtTime + range: datetime + pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ + has_minimum_numeric_value: + name: has_minimum_numeric_value + description: The minimum value part, expressed as number, of the quantity value + when the value covers a range. + from_schema: https://example.com/nmdc_submission_schema + is_a: has_numeric_value + was_generated_by: + name: was_generated_by + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:wasGeneratedBy + range: Activity environment field: name: environment field description: field describing environmental aspect of a sample from_schema: https://example.com/nmdc_submission_schema abstract: true - description: - name: description - description: a human-readable description of a thing + started_at_time: + name: started_at_time + notes: + - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ + It may not be complete, but it is good enough for now.' from_schema: https://example.com/nmdc_submission_schema - slot_uri: dcterms:description - range: string + mappings: + - prov:startedAtTime + range: datetime + pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ + investigation field: + name: investigation field + description: field describing aspect of the investigation/study to which the sample + belongs + from_schema: https://example.com/nmdc_submission_schema + abstract: true + was_informed_by: + name: was_informed_by + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:wasInformedBy + range: Activity classes: AirInterface: name: AirInterface @@ -15619,7 +15626,9 @@ classes: only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -15650,7 +15659,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -15766,8 +15776,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -15828,6 +15836,12 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -15854,6 +15868,8 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -16315,7 +16331,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -16345,7 +16362,8 @@ classes: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -17181,7 +17199,9 @@ classes: only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -17212,7 +17232,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -17531,8 +17552,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -17593,6 +17612,12 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -17619,6 +17644,8 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -18276,7 +18303,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -18585,7 +18611,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -18615,7 +18642,8 @@ classes: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -19979,7 +20007,9 @@ classes: only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -20060,7 +20090,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -20511,8 +20542,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -20598,6 +20627,12 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -20624,6 +20659,8 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -24406,7 +24443,9 @@ classes: only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -24492,7 +24531,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -24780,8 +24820,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -24842,6 +24880,12 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -24868,6 +24912,8 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -25532,7 +25578,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -25844,7 +25889,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -25908,7 +25954,8 @@ classes: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -27534,7 +27581,9 @@ classes: only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -27620,7 +27669,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -27908,8 +27958,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -27970,6 +28018,12 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -27996,6 +28050,8 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -28656,7 +28712,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -29053,7 +29108,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -29114,7 +29170,8 @@ classes: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -30262,7 +30319,9 @@ classes: only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -30293,7 +30352,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -30409,8 +30469,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -30471,6 +30529,12 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -30497,6 +30561,8 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -31633,7 +31699,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -31663,7 +31730,8 @@ classes: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -32228,7 +32296,9 @@ classes: only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -32288,7 +32358,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -32578,8 +32649,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -32640,6 +32709,12 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -32666,6 +32741,8 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -33096,7 +33173,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -33346,7 +33422,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -33376,7 +33453,8 @@ classes: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -34060,7 +34138,9 @@ classes: only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -34120,7 +34200,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -34236,8 +34317,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -34298,6 +34377,12 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -34324,6 +34409,8 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -36033,7 +36120,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -36063,7 +36151,8 @@ classes: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -36903,7 +36992,9 @@ classes: only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -36963,7 +37054,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -37282,8 +37374,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -37344,6 +37434,12 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -37370,6 +37466,8 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -38060,7 +38158,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -38399,7 +38496,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -38429,7 +38527,8 @@ classes: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -39104,9 +39203,6 @@ classes: Thoughts? I would argue this isn't an extreme unusual property. It's just a biogeochemical measurement. comments: - - Aluminum saturation is the percentage of the CEC occupies by aluminum. Like - all cations, aluminum held by the cation exchange complex is in equilibrium - with aluminum in the soil solution. - Aluminum saturation is the percentage of the CEC occupies by aluminum. Like all cations, aluminum held by the cation exchange complex is in equilibrium with aluminum in the soil solution. @@ -39137,7 +39233,6 @@ classes: Thoughts? comments: - Required when aluminum saturation is provided. - - Required when aluminum saturation is provided. examples: - value: https://doi.org/10.1371/journal.pone.0176357 from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -39406,7 +39501,9 @@ classes: only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -39489,9 +39586,6 @@ classes: - Values provided here can be specific species of vegetation or vegetation regions - See for vegetation regions- https://education.nationalgeographic.org/resource/vegetation-region - - Values provided here can be specific species of vegetation or vegetation - regions - - See for vegetation regions- https://education.nationalgeographic.org/resource/vegetation-region examples: - value: deciduous forest - value: forest @@ -39522,7 +39616,6 @@ classes: find out how they accomplish this if provided. comments: - Required when current vegetation is provided. - - Required when current vegetation is provided. examples: - value: https://doi.org/10.1111/j.1654-109X.2011.01154.x from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -39551,7 +39644,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -39693,8 +39787,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -39755,6 +39847,12 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -39781,6 +39879,8 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -39889,8 +39989,6 @@ classes: - This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot comments: - - Provide the date the fire occurred. If extended burning occurred provide - the date range. - Provide the date the fire occurred. If extended burning occurred provide the date range. examples: @@ -39925,8 +40023,6 @@ classes: - This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot comments: - - Provide the date the flood occurred. If extended flooding occurred provide - the date range. - Provide the date the flood occurred. If extended flooding occurred provide the date range. examples: @@ -40056,7 +40152,6 @@ classes: heavy metals. We don't have that ability in the submission portal. comments: - For multiple heavy metals and concentrations, separate by ; - - For multiple heavy metals and concentrations, separate by ; examples: - value: mercury 0.09 micrograms per gram - value: mercury 0.09 ug/g; chromium 0.03 ug/g @@ -40083,9 +40178,6 @@ classes: slots, map this to the MIxS slot comments: - Required when heavy metals are provided - - If different methods are used for multiple metals, indicate the metal and - method. Separate metals by ; - - Required when heavy metals are provided - If different methods are used for multiple metals, indicate the metal and method. Separate metals by ; examples: @@ -40644,7 +40736,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -40904,7 +40995,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -40934,7 +41026,8 @@ classes: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -40997,8 +41090,6 @@ classes: - mean and average are the same thing, but it seems like bad practice to not be consistent. Changed mean to average comments: - - Seasons are defined as spring (March, April, May), summer (June, July, August), - autumn (September, October, November) and winter (December, January, February). - Seasons are defined as spring (March, April, May), summer (June, July, August), autumn (September, October, November) and winter (December, January, February). examples: @@ -41053,8 +41144,6 @@ classes: comments: - Describe how samples were composited or sieved. - Use 'sample link' to indicate which samples were combined. - - Describe how samples were composited or sieved. - - Use 'sample link' to indicate which samples were combined. examples: - value: combined 2 cores - value: 4mm sieved @@ -41147,9 +41236,6 @@ classes: - This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot comments: - - Aspect is the orientation of slope, measured clockwise in degrees from 0 - to 360, where 0 is north-facing, 90 is east-facing, 180 is south-facing, - and 270 is west-facing. - Aspect is the orientation of slope, measured clockwise in degrees from 0 to 360, where 0 is north-facing, 90 is east-facing, 180 is south-facing, and 270 is west-facing. @@ -41567,7 +41653,6 @@ classes: - Should this be multi valued? How to we manage and validate this? comments: - Required if providing water content - - Required if providing water content examples: - value: J. Nat. Prod. Plant Resour., 2012, 2 (4):500-503 - value: https://dec.alaska.gov/applications/spar/webcalc/definitions.htm @@ -41924,7 +42009,9 @@ classes: only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -41955,7 +42042,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -42099,8 +42187,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -42193,6 +42279,12 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -42219,6 +42311,8 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -42631,7 +42725,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -42877,7 +42970,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -42907,7 +43001,8 @@ classes: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -44018,7 +44113,9 @@ classes: only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -44106,7 +44203,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -44511,8 +44609,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -44573,6 +44669,12 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -44599,6 +44701,8 @@ classes: notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -45283,7 +45387,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -45649,7 +45752,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -45679,7 +45783,8 @@ classes: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -46354,20 +46459,6 @@ classes: and consistent within your lab, and as informative as possible. examples: - value: Rock core CB1178(5-6) from NSW - ControlledIdentifiedTermValue: - name: ControlledIdentifiedTermValue - description: A controlled term or class from an ontology, requiring the presence - of term with an id - notes: - - To be used for slots like env_broad_scale - from_schema: https://example.com/nmdc_submission_schema - is_a: ControlledTermValue - slot_usage: - term: - name: term - domain_of: - - ControlledTermValue - required: true AttributeValue: name: AttributeValue description: The value for any value of a attribute for a sample. This object @@ -46380,20 +46471,49 @@ classes: type: name: type description: An optional string that specified the type of object. - TextValue: - name: TextValue - description: A basic string value + Activity: + name: Activity + description: a provence-generating activity from_schema: https://example.com/nmdc_submission_schema - is_a: AttributeValue + mappings: + - prov:Activity slots: - - language - TimestampValue: - name: TimestampValue - description: A value that is a timestamp. The range should be ISO-8601 + - id + - name + - started_at_time + - ended_at_time + - was_informed_by + - was_associated_with + - used + slot_usage: + id: + name: id + domain_of: + - Biosample + - Study + - Activity + - NamedThing + pattern: ^(nmdc):act-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\.[A-Za-z0-9]{1,})*(_[A-Za-z0-9_\.-]+)?$ + structured_pattern: + syntax: '{id_nmdc_prefix}:act-{id_shoulder}-{id_blade}{id_version}{id_locus}' + interpolated: true + todos: + - remove the static pattern once the minter can generate ids that satisfy + this structured_pattern and gen-linkml can expand the structured_pattern + ControlledIdentifiedTermValue: + name: ControlledIdentifiedTermValue + description: A controlled term or class from an ontology, requiring the presence + of term with an id notes: - - 'removed the following slots: year, month, day' + - To be used for slots like env_broad_scale from_schema: https://example.com/nmdc_submission_schema - is_a: AttributeValue + is_a: ControlledTermValue + slot_usage: + term: + name: term + domain_of: + - ControlledTermValue + required: true OntologyClass: name: OntologyClass notes: @@ -46411,6 +46531,13 @@ classes: - name - description - alternative_identifiers + TextValue: + name: TextValue + description: A basic string value + from_schema: https://example.com/nmdc_submission_schema + is_a: AttributeValue + slots: + - language QuantityValue: name: QuantityValue description: A simple quantity, e.g. 2cm @@ -46442,6 +46569,15 @@ classes: - QuantityValue - IntegerValue range: double + Agent: + name: Agent + description: a provence-generating agent + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:Agent + slots: + - acted_on_behalf_of + - was_informed_by ControlledTermValue: name: ControlledTermValue description: A controlled term or class from an ontology @@ -46451,6 +46587,13 @@ classes: is_a: AttributeValue slots: - term + TimestampValue: + name: TimestampValue + description: A value that is a timestamp. The range should be ISO-8601 + notes: + - 'removed the following slots: year, month, day' + from_schema: https://example.com/nmdc_submission_schema + is_a: AttributeValue GeolocationValue: name: GeolocationValue description: A normalized value for a location on the earth's surface @@ -46469,43 +46612,5 @@ classes: description: The raw value for a geolocation should follow {lat} {long} domain_of: - AttributeValue - Agent: - name: Agent - description: a provence-generating agent - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:Agent - slots: - - acted_on_behalf_of - - was_informed_by - Activity: - name: Activity - description: a provence-generating activity - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:Activity - slots: - - id - - name - - started_at_time - - ended_at_time - - was_informed_by - - was_associated_with - - used - slot_usage: - id: - name: id - domain_of: - - Biosample - - Study - - Activity - - NamedThing - pattern: ^(nmdc):act-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\.[A-Za-z0-9]{1,})*(_[A-Za-z0-9_\.-]+)?$ - structured_pattern: - syntax: '{id_nmdc_prefix}:act-{id_shoulder}-{id_blade}{id_version}{id_locus}' - interpolated: true - todos: - - remove the static pattern once the minter can generate ids that satisfy - this structured_pattern and gen-linkml can expand the structured_pattern source_file: sheets_and_friends/yaml_out/with_modifications.yaml.raw diff --git a/sheets_and_friends/yaml_out/with_modifications.yaml.raw b/sheets_and_friends/yaml_out/with_modifications.yaml.raw index 763e782f..df4aa3ba 100644 --- a/sheets_and_friends/yaml_out/with_modifications.yaml.raw +++ b/sheets_and_friends/yaml_out/with_modifications.yaml.raw @@ -1302,34 +1302,122 @@ enums: other: text: other description: placeholder PV descr - floor_cond_enum: - name: floor_cond_enum + ceil_type_enum: + name: ceil_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - occup_document_enum: - name: occup_document_enum + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + floor_water_mold_enum: + name: floor_water_mold_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - automated count: - text: automated count - estimate: - text: estimate - manual count: - text: manual count - videos: - text: videos - heat_deliv_loc_enum: - name: heat_deliv_loc_enum + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + specific_enum: + name: specific_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + photos: + text: photos + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard + metal: + text: metal + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + indoor_surf_enum: + name: indoor_surf_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + cabinet: + text: cabinet + ceiling: + text: ceiling + counter top: + text: counter top + door: + text: door + shelving: + text: shelving + vent cover: + text: vent cover + window: + text: window + wall: + text: wall + wall_loc_enum: + name: wall_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: north: @@ -1340,22 +1428,96 @@ enums: text: east west: text: west - gender_restroom_enum: - name: gender_restroom_enum + window_type_enum: + name: window_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - all gender: - text: all gender - female: - text: female - gender neurtral: - text: gender neurtral - male: - text: male - male and female: - text: male and female - unisex: - text: unisex + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + samp_floor_enum: + name: samp_floor_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + filter_type_enum: + name: filter_type_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + window_cover_enum: + name: window_cover_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + room_condt_enum: + name: room_condt_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + visible signs of mold/mildew: + text: visible signs of mold/mildew + room_connected_enum: + name: room_connected_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + office: + text: office + stairwell: + text: stairwell build_docs_enum: name: build_docs_enum from_schema: https://example.com/nmdc_submission_schema @@ -1386,74 +1548,58 @@ enums: text: ventilation system windows: text: windows - door_type_wood_enum: - name: door_type_wood_enum + indoor_space_enum: + name: indoor_space_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - bettened and ledged: - text: bettened and ledged - battened: - text: battened - ledged and braced: - text: ledged and braced - ledged and framed: - text: ledged and framed - ledged, braced and frame: - text: ledged, braced and frame - framed and paneled: - text: framed and paneled - glashed or sash: - text: glashed or sash - flush: - text: flush - louvered: - text: louvered - wire gauged: - text: wire gauged - surf_material_enum: - name: surf_material_enum + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator + window_loc_enum: + name: window_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass - metal: - text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile - vinyl: - text: vinyl - wood: - text: wood - furniture_enum: - name: furniture_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + ext_wall_orient_enum: + name: ext_wall_orient_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest drawings_enum: name: drawings_enum from_schema: https://example.com/nmdc_submission_schema @@ -1496,170 +1642,174 @@ enums: text: sunny windy: text: windy - weekday_enum: - name: weekday_enum + rel_samp_loc_enum: + name: rel_samp_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday - window_mat_enum: - name: window_mat_enum + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat + door_mat_enum: + name: door_mat_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - clad: - text: clad + aluminum: + text: aluminum + cellular PVC: + text: cellular PVC + engineered plastic: + text: engineered plastic + fiberboard: + text: fiberboard fiberglass: text: fiberglass metal: text: metal + thermoplastic alloy: + text: thermoplastic alloy vinyl: text: vinyl wood: text: wood - samp_floor_enum: - name: samp_floor_enum + wood/plastic composite: + text: wood/plastic composite + room_type_enum: + name: room_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + private office: + text: private office + open office: + text: open office + stairwell: + text: stairwell + ',restroom': + text: ',restroom' lobby: text: lobby - door_type_metal_enum: - name: door_type_metal_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate - ceil_finish_mat_enum: - name: ceil_finish_mat_enum + vestibule: + text: vestibule + mechanical or electrical room: + text: mechanical or electrical room + data center: + text: data center + laboratory_wet: + text: laboratory_wet + laboratory_dry: + text: laboratory_dry + gymnasium: + text: gymnasium + natatorium: + text: natatorium + auditorium: + text: auditorium + lockers: + text: lockers + cafe: + text: cafe + warehouse: + text: warehouse + wall_finish_mat_enum: + name: wall_finish_mat_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment wood: text: wood - vis_media_enum: - name: vis_media_enum + metal: + text: metal + masonry: + text: masonry + quad_pos_enum: + name: quad_pos_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - photos: - text: photos - videos: - text: videos - commonly of the building: - text: commonly of the building - site context (adjacent buildings, vegetation, terrain, streets): - text: site context (adjacent buildings, vegetation, terrain, streets) - interiors: - text: interiors - equipment: - text: equipment - 3D scans: - text: 3D scans - room_loc_enum: - name: room_loc_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - wall_const_type_enum: - name: wall_const_type_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - surf_air_cont_enum: - name: surf_air_cont_enum + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + build_occup_type_enum: + name: build_occup_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - room_condt_enum: - name: room_condt_enum + office: + text: office + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + door_direct_enum: + name: door_direct_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - visible signs of mold/mildew: - text: visible signs of mold/mildew - door_loc_enum: - name: door_loc_enum + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + ext_window_orient_enum: + name: ext_window_orient_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: north: @@ -1670,32 +1820,56 @@ enums: text: east west: text: west - specific_enum: - name: specific_enum + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + vis_media_enum: + name: vis_media_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design photos: text: photos - substructure_type_enum: - name: substructure_type_enum + videos: + text: videos + commonly of the building: + text: commonly of the building + site context (adjacent buildings, vegetation, terrain, streets): + text: site context (adjacent buildings, vegetation, terrain, streets) + interiors: + text: interiors + equipment: + text: equipment + 3D scans: + text: 3D scans + arch_struc_enum: + name: arch_struc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement + building: + text: building + shed: + text: shed + home: + text: home + water_feat_type_enum: + name: water_feat_type_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall int_wall_cond_enum: name: int_wall_cond_enum from_schema: https://example.com/nmdc_submission_schema @@ -1710,44 +1884,80 @@ enums: text: damaged rupture: text: rupture - shading_device_type_enum: - name: shading_device_type_enum + door_type_enum: + name: door_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - bahama shutters: - text: bahama shutters - exterior roll blind: - text: exterior roll blind - gambrel awning: - text: gambrel awning - hood awning: - text: hood awning - porchroller awning: - text: porchroller awning - sarasota shutters: - text: sarasota shutters - slatted aluminum: - text: slatted aluminum - solid aluminum awning: - text: solid aluminum awning - sun screen: - text: sun screen - tree: - text: tree - trellis: - text: trellis - venetian awning: - text: venetian awning - window_type_enum: - name: window_type_enum + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + floor_struc_enum: + name: floor_struc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + window_cond_enum: + name: window_cond_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + wall_texture_enum: + name: wall_texture_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl door_cond_enum: name: door_cond_enum from_schema: https://example.com/nmdc_submission_schema @@ -1762,76 +1972,86 @@ enums: text: rupture visible wear: text: visible wear - door_mat_enum: - name: door_mat_enum + floor_cond_enum: + name: floor_cond_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - aluminum: - text: aluminum - cellular PVC: - text: cellular PVC - engineered plastic: - text: engineered plastic - fiberboard: - text: fiberboard - fiberglass: - text: fiberglass - metal: - text: metal - thermoplastic alloy: - text: thermoplastic alloy - vinyl: - text: vinyl - wood: - text: wood - wood/plastic composite: - text: wood/plastic composite - light_type_enum: - name: light_type_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + occup_document_enum: + name: occup_document_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - quad_pos_enum: - name: quad_pos_enum + automated count: + text: automated count + estimate: + text: estimate + manual count: + text: manual count + videos: + text: videos + ceil_texture_enum: + name: ceil_texture_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - indoor_space_enum: - name: indoor_space_enum + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + train_stat_loc_enum: + name: train_stat_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - bedroom: - text: bedroom - office: - text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside + train_stop_loc_enum: + name: train_stop_loc_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + end: + text: end + mid: + text: mid + downtown: + text: downtown season_use_enum: name: season_use_enum from_schema: https://example.com/nmdc_submission_schema @@ -1844,40 +2064,76 @@ enums: text: Fall Winter: text: Winter - floor_struc_enum: - name: floor_struc_enum + substructure_type_enum: + name: substructure_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + surf_material_enum: + name: surf_material_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks concrete: text: concrete - train_stat_loc_enum: - name: train_stat_loc_enum + hay bales: + text: hay bales + glass: + text: glass + metal: + text: metal + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile + vinyl: + text: vinyl + wood: + text: wood + light_type_enum: + name: light_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside - ext_window_orient_enum: - name: ext_window_orient_enum + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + window_horiz_pos_enum: + name: window_horiz_pos_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + left: + text: left + middle: + text: middle + right: + text: right + door_loc_enum: + name: door_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: north: @@ -1888,184 +2144,222 @@ enums: text: east west: text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - build_occup_type_enum: - name: build_occup_type_enum + surf_air_cont_enum: + name: surf_air_cont_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - rel_samp_loc_enum: - name: rel_samp_loc_enum + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + wall_surf_treatment_enum: + name: wall_surf_treatment_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - window_vert_pos_enum: - name: window_vert_pos_enum + painted: + text: painted + wall paper: + text: wall paper + no treatment: + text: no treatment + paneling: + text: paneling + stucco: + text: stucco + fabric: + text: fabric + door_type_wood_enum: + name: door_type_wood_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high - wall_loc_enum: - name: wall_loc_enum + bettened and ledged: + text: bettened and ledged + battened: + text: battened + ledged and braced: + text: ledged and braced + ledged and framed: + text: ledged and framed + ledged, braced and frame: + text: ledged, braced and frame + framed and paneled: + text: framed and paneled + glashed or sash: + text: glashed or sash + flush: + text: flush + louvered: + text: louvered + wire gauged: + text: wire gauged + heat_cool_type_enum: + name: heat_cool_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - indoor_surf_enum: - name: indoor_surf_enum + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + train_line_enum: + name: train_line_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - cabinet: - text: cabinet - ceiling: - text: ceiling - counter top: - text: counter top - door: - text: door - shelving: - text: shelving - vent cover: - text: vent cover - window: - text: window - wall: - text: wall - train_stop_loc_enum: - name: train_stop_loc_enum + red: + text: red + green: + text: green + orange: + text: orange + shading_device_type_enum: + name: shading_device_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - end: - text: end - mid: - text: mid - downtown: - text: downtown - water_feat_type_enum: - name: water_feat_type_enum + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning + door_move_enum: + name: door_move_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - wall_texture_enum: - name: wall_texture_enum + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging + wall_const_type_enum: + name: wall_const_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - ? '' - : text: '' - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - wall_surf_treatment_enum: - name: wall_surf_treatment_enum + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive + room_samp_pos_enum: + name: room_samp_pos_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + weekday_enum: + name: weekday_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - painted: - text: painted - wall paper: - text: wall paper - no treatment: - text: no treatment - paneling: - text: paneling - stucco: - text: stucco - fabric: - text: fabric - arch_struc_enum: - name: arch_struc_enum + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + gender_restroom_enum: + name: gender_restroom_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - ext_wall_orient_enum: - name: ext_wall_orient_enum + all gender: + text: all gender + female: + text: female + gender neurtral: + text: gender neurtral + male: + text: male + male and female: + text: male and female + unisex: + text: unisex + shading_device_cond_enum: + name: shading_device_cond_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + heat_deliv_loc_enum: + name: heat_deliv_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: north: @@ -2076,14 +2370,20 @@ enums: text: east west: text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest + window_mat_enum: + name: window_mat_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + clad: + text: clad + fiberglass: + text: fiberglass + metal: + text: metal + vinyl: + text: vinyl + wood: + text: wood mech_struc_enum: name: mech_struc_enum from_schema: https://example.com/nmdc_submission_schema @@ -2106,92 +2406,38 @@ enums: text: car bus: text: bus - door_move_enum: - name: door_move_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging - wall_finish_mat_enum: - name: wall_finish_mat_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood - metal: - text: metal - masonry: - text: masonry - door_direct_enum: - name: door_direct_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - window_cover_enum: - name: window_cover_enum + room_loc_enum: + name: room_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - heat_cool_type_enum: - name: heat_cool_type_enum + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + furniture_enum: + name: furniture_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove - door_type_enum: - name: door_type_enum + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks + handidness_enum: + name: handidness_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - composite: - text: composite - metal: - text: metal - wooden: - text: wooden + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness floor_finish_mat_enum: name: floor_finish_mat_enum from_schema: https://example.com/nmdc_submission_schema @@ -2232,176 +2478,6 @@ enums: text: paint none or unfinished: text: none or unfinished - train_line_enum: - name: train_line_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - room_type_enum: - name: room_type_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - private office: - text: private office - open office: - text: open office - stairwell: - text: stairwell - ',restroom': - text: ',restroom' - lobby: - text: lobby - vestibule: - text: vestibule - mechanical or electrical room: - text: mechanical or electrical room - data center: - text: data center - laboratory_wet: - text: laboratory_wet - laboratory_dry: - text: laboratory_dry - gymnasium: - text: gymnasium - natatorium: - text: natatorium - auditorium: - text: auditorium - lockers: - text: lockers - cafe: - text: cafe - warehouse: - text: warehouse - ceil_type_enum: - name: ceil_type_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - building_setting_enum: - name: building_setting_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - room_connected_enum: - name: room_connected_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - office: - text: office - stairwell: - text: stairwell - room_samp_pos_enum: - name: room_samp_pos_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center - shading_device_cond_enum: - name: shading_device_cond_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - window_cond_enum: - name: window_cond_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear door_comp_type_enum: name: door_comp_type_enum from_schema: https://example.com/nmdc_submission_schema @@ -2414,62 +2490,20 @@ enums: text: sliding telescopic: text: telescopic - handidness_enum: - name: handidness_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - window_horiz_pos_enum: - name: window_horiz_pos_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - left: - text: left - middle: - text: middle - right: - text: right - floor_water_mold_enum: - name: floor_water_mold_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - window_loc_enum: - name: window_loc_enum + door_type_metal_enum: + name: door_type_metal_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate ceil_cond_enum: name: ceil_cond_enum from_schema: https://example.com/nmdc_submission_schema @@ -2484,52 +2518,74 @@ enums: text: damaged rupture: text: rupture - filter_type_enum: - name: filter_type_enum + building_setting_enum: + name: building_setting_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - ceil_texture_enum: - name: ceil_texture_enum + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + samp_collect_point_enum: + name: samp_collect_point_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other + hcr_enum: + name: hcr_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir + other: + text: other + rel_to_oxygen_enum: + name: rel_to_oxygen_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + aerobe: + text: aerobe + anaerobe: + text: anaerobe + facultative: + text: facultative + microaerophilic: + text: microaerophilic + microanaerobe: + text: microanaerobe + obligate aerobe: + text: obligate aerobe + obligate anaerobe: + text: obligate anaerobe hc_produced_enum: name: hc_produced_enum from_schema: https://example.com/nmdc_submission_schema @@ -2582,54 +2638,44 @@ enums: text: Other - Volcanic other: text: other - samp_subtype_enum: - name: samp_subtype_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other - rel_to_oxygen_enum: - name: rel_to_oxygen_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - aerobe: - text: aerobe - anaerobe: - text: anaerobe - facultative: - text: facultative - microaerophilic: - text: microaerophilic - microanaerobe: - text: microanaerobe - obligate aerobe: - text: obligate aerobe - obligate anaerobe: - text: obligate anaerobe - samp_collect_point_enum: - name: samp_collect_point_enum + hcr_geol_age_enum: + name: hcr_geol_age_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic other: text: other lithology_enum: @@ -2662,24 +2708,18 @@ enums: text: Volcanic other: text: other - hcr_enum: - name: hcr_enum + samp_subtype_enum: + name: samp_subtype_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable other: text: other oxy_stat_samp_enum: @@ -2692,44 +2732,46 @@ enums: text: anaerobic other: text: other - hcr_geol_age_enum: - name: hcr_geol_age_enum + sr_lithology_enum: + name: sr_lithology_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous + other: + text: other + sr_kerog_type_enum: + name: sr_kerog_type_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + sr_dep_env_enum: + name: sr_dep_env_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine other: text: other sr_geol_age_enum: @@ -2772,48 +2814,38 @@ enums: text: Triassic other: text: other - sr_kerog_type_enum: - name: sr_kerog_type_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV - other: - text: other - sr_lithology_enum: - name: sr_lithology_enum + profile_position_enum: + name: profile_position_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous - other: - text: other - sr_dep_env_enum: - name: sr_dep_env_enum + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope + soil_horizon_enum: + name: soil_horizon_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost fao_class_enum: name: fao_class_enum from_schema: https://example.com/nmdc_submission_schema @@ -2870,20 +2902,6 @@ enums: text: Vertisols Yermosols: text: Yermosols - profile_position_enum: - name: profile_position_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope biotic_relationship_enum: name: biotic_relationship_enum from_schema: https://example.com/nmdc_submission_schema @@ -2896,62 +2914,6 @@ enums: text: commensal symbiont: text: symbiont - soil_horizon_enum: - name: soil_horizon_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - drainage_class_enum: - name: drainage_class_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - very poorly: - text: very poorly - poorly: - text: poorly - somewhat poorly: - text: somewhat poorly - moderately well: - text: moderately well - well: - text: well - excessively drained: - text: excessively drained - tillage_enum: - name: tillage_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough cur_land_use_enum: name: cur_land_use_enum from_schema: https://example.com/nmdc_submission_schema @@ -3027,6 +2989,94 @@ enums: text: swamp (permanent or semi-permanent water body dominated by woody plants) crop trees (nuts,fruit,christmas trees,nursery trees): text: crop trees (nuts,fruit,christmas trees,nursery trees) + tillage_enum: + name: tillage_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + drainage_class_enum: + name: drainage_class_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + very poorly: + text: very poorly + poorly: + text: poorly + somewhat poorly: + text: somewhat poorly + moderately well: + text: moderately well + well: + text: well + excessively drained: + text: excessively drained + biol_stat_enum: + name: biol_stat_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + samp_capt_status_enum: + name: samp_capt_status_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample + other: + text: other + samp_dis_stage_enum: + name: samp_dis_stage_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + dissemination: + text: dissemination + growth and reproduction: + text: growth and reproduction + infection: + text: infection + inoculation: + text: inoculation + penetration: + text: penetration + other: + text: other growth_habit_enum: name: growth_habit_enum from_schema: https://example.com/nmdc_submission_schema @@ -3101,56 +3151,18 @@ enums: text: Trioecious Unisexual: text: Unisexual - biol_stat_enum: - name: biol_stat_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - samp_capt_status_enum: - name: samp_capt_status_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample - other: - text: other - samp_dis_stage_enum: - name: samp_dis_stage_enum + tidal_stage_enum: + name: tidal_stage_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - dissemination: - text: dissemination - growth and reproduction: - text: growth and reproduction - infection: - text: infection - inoculation: - text: inoculation - penetration: - text: penetration - other: - text: other + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide sediment_type_enum: name: sediment_type_enum from_schema: https://example.com/nmdc_submission_schema @@ -3163,18 +3175,6 @@ enums: text: hydrogenous lithogenous: text: lithogenous - tidal_stage_enum: - name: tidal_stage_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide host_sex_enum: name: host_sex_enum from_schema: https://example.com/nmdc_submission_schema @@ -3237,7 +3237,9 @@ slots: - Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable. examples: - - value: 2021-04-15, 2021-04 and 2021 are all acceptable. + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://example.com/nmdc_submission_schema rank: 2 string_serialization: '{date, arbitrary precision}' @@ -3253,7 +3255,8 @@ slots: comments: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema rank: 1 string_serialization: '{time, seconds optional}' @@ -3270,7 +3273,8 @@ slots: comments: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema rank: 3 string_serialization: '{time, seconds optional}' @@ -4141,7 +4145,9 @@ slots: - Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable. examples: - - value: 2021-04-15, 2021-04 and 2021 are all acceptable. + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://example.com/nmdc_submission_schema rank: 4 string_serialization: '{date, arbitrary precision}' @@ -4157,7 +4163,8 @@ slots: comments: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema rank: 5 string_serialization: '{time, seconds optional}' @@ -15180,71 +15187,31 @@ slots: - zinc is_a: attribute range: QuantityValue - has_raw_value: - name: has_raw_value - description: The value that was specified for an annotation in raw form, i.e. - a string. E.g. "2 cm" or "2-4 cm" - from_schema: https://example.com/nmdc_submission_schema - domain: AttributeValue - multivalued: false - range: string - was_generated_by: - name: was_generated_by - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:wasGeneratedBy - range: Activity - investigation field: - name: investigation field - description: field describing aspect of the investigation/study to which the sample - belongs - from_schema: https://example.com/nmdc_submission_schema - abstract: true - started_at_time: - name: started_at_time - notes: - - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ - It may not be complete, but it is good enough for now.' + has_unit: + name: has_unit + description: Links a QuantityValue to a unit from_schema: https://example.com/nmdc_submission_schema + aliases: + - scale mappings: - - prov:startedAtTime - range: datetime - pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ - nucleic acid sequence source field: - name: nucleic acid sequence source field - from_schema: https://example.com/nmdc_submission_schema - abstract: true - name: - name: name - description: A human readable label for an entity + - qud:unit + - schema:unitCode + range: unit + description: + name: description + description: a human-readable description of a thing from_schema: https://example.com/nmdc_submission_schema + slot_uri: dcterms:description range: string - core field: - name: core field - description: basic fields - from_schema: https://example.com/nmdc_submission_schema - abstract: true - has_maximum_numeric_value: - name: has_maximum_numeric_value - description: The maximum value part, expressed as number, of the quantity value - when the value covers a range. - from_schema: https://example.com/nmdc_submission_schema - is_a: has_numeric_value - language: - name: language - description: Should use ISO 639-1 code e.g. "en", "fr" - from_schema: https://example.com/nmdc_submission_schema - range: language code - ended_at_time: - name: ended_at_time - notes: - - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ - It may not be complete, but it is good enough for now.' + longitude: + name: longitude + description: longitude from_schema: https://example.com/nmdc_submission_schema mappings: - - prov:endedAtTime - range: datetime - pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ + - schema:longitude + domain: GeolocationValue + slot_uri: wgs84:long + range: decimal degree term: name: term description: pointer to an ontology class @@ -15254,33 +15221,32 @@ slots: domain: ControlledTermValue range: OntologyClass inlined: true + has_raw_value: + name: has_raw_value + description: The value that was specified for an annotation in raw form, i.e. + a string. E.g. "2 cm" or "2-4 cm" + from_schema: https://example.com/nmdc_submission_schema + domain: AttributeValue + multivalued: false + range: string + core field: + name: core field + description: basic fields + from_schema: https://example.com/nmdc_submission_schema + abstract: true alternative_identifiers: name: alternative_identifiers description: A list of alternative identifiers for the entity. from_schema: https://example.com/nmdc_submission_schema multivalued: true range: string - has_numeric_value: - name: has_numeric_value - description: Links a quantity value to a number - from_schema: https://example.com/nmdc_submission_schema - mappings: - - qud:quantityValue - - schema:value - multivalued: false - range: float - acted_on_behalf_of: - name: acted_on_behalf_of - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:actedOnBehalfOf - range: Agent - has_minimum_numeric_value: - name: has_minimum_numeric_value - description: The minimum value part, expressed as number, of the quantity value - when the value covers a range. + gold_path_field: + name: gold_path_field + description: This is a grouping for any of the gold path fields from_schema: https://example.com/nmdc_submission_schema - is_a: has_numeric_value + is_a: attribute + abstract: true + range: string id: name: id description: A unique identifier for a thing. Must be either a CURIE shorthand @@ -15298,12 +15264,28 @@ slots: description: https://github.com/microbiomedata/nmdc-schema/pull/499#discussion_r1018499248 from_schema: https://example.com/nmdc_submission_schema identifier: true + acted_on_behalf_of: + name: acted_on_behalf_of + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:actedOnBehalfOf + range: Agent + nucleic acid sequence source field: + name: nucleic acid sequence source field + from_schema: https://example.com/nmdc_submission_schema + abstract: true was_associated_with: name: was_associated_with from_schema: https://example.com/nmdc_submission_schema mappings: - prov:wasAssociatedWith range: Agent + has_maximum_numeric_value: + name: has_maximum_numeric_value + description: The maximum value part, expressed as number, of the quantity value + when the value covers a range. + from_schema: https://example.com/nmdc_submission_schema + is_a: has_numeric_value attribute: name: attribute description: 'A attribute of a biosample. Examples: depth, habitat, material. @@ -15316,38 +15298,17 @@ slots: - key - characteristic abstract: true - was_informed_by: - name: was_informed_by - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:wasInformedBy - range: Activity - longitude: - name: longitude - description: longitude + used: + name: used from_schema: https://example.com/nmdc_submission_schema mappings: - - schema:longitude - domain: GeolocationValue - slot_uri: wgs84:long - range: decimal degree - gold_path_field: - name: gold_path_field - description: This is a grouping for any of the gold path fields + - prov:used + domain: Activity + name: + name: name + description: A human readable label for an entity from_schema: https://example.com/nmdc_submission_schema - is_a: attribute - abstract: true range: string - has_unit: - name: has_unit - description: Links a QuantityValue to a unit - from_schema: https://example.com/nmdc_submission_schema - aliases: - - scale - mappings: - - qud:unit - - schema:unitCode - range: unit latitude: name: latitude description: latitude @@ -15357,23 +15318,69 @@ slots: domain: GeolocationValue slot_uri: wgs84:lat range: decimal degree - used: - name: used + language: + name: language + description: Should use ISO 639-1 code e.g. "en", "fr" + from_schema: https://example.com/nmdc_submission_schema + range: language code + has_numeric_value: + name: has_numeric_value + description: Links a quantity value to a number from_schema: https://example.com/nmdc_submission_schema mappings: - - prov:used - domain: Activity + - qud:quantityValue + - schema:value + multivalued: false + range: float + ended_at_time: + name: ended_at_time + notes: + - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ + It may not be complete, but it is good enough for now.' + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:endedAtTime + range: datetime + pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ + has_minimum_numeric_value: + name: has_minimum_numeric_value + description: The minimum value part, expressed as number, of the quantity value + when the value covers a range. + from_schema: https://example.com/nmdc_submission_schema + is_a: has_numeric_value + was_generated_by: + name: was_generated_by + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:wasGeneratedBy + range: Activity environment field: name: environment field description: field describing environmental aspect of a sample from_schema: https://example.com/nmdc_submission_schema abstract: true - description: - name: description - description: a human-readable description of a thing + started_at_time: + name: started_at_time + notes: + - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ + It may not be complete, but it is good enough for now.' from_schema: https://example.com/nmdc_submission_schema - slot_uri: dcterms:description - range: string + mappings: + - prov:startedAtTime + range: datetime + pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ + investigation field: + name: investigation field + description: field describing aspect of the investigation/study to which the sample + belongs + from_schema: https://example.com/nmdc_submission_schema + abstract: true + was_informed_by: + name: was_informed_by + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:wasInformedBy + range: Activity classes: AirInterface: name: AirInterface @@ -15618,7 +15625,9 @@ classes: description: The date of sampling title: collection date examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -15649,7 +15658,8 @@ classes: Depth can be reported as an interval for subsurface samples. title: depth, meters examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -15769,8 +15779,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -15840,6 +15848,12 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -15866,6 +15880,8 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: soil [ENVO:00001998] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -16318,7 +16334,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -16345,7 +16362,8 @@ classes: ) of sample collected. title: amount or size of sample collected examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -17180,7 +17198,9 @@ classes: description: The date of sampling title: collection date examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -17211,7 +17231,8 @@ classes: Depth can be reported as an interval for subsurface samples. title: depth, meters examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -17534,8 +17555,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -17605,6 +17624,12 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -17631,6 +17656,8 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: soil [ENVO:00001998] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -18279,7 +18306,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -18588,7 +18614,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -18615,7 +18642,8 @@ classes: ) of sample collected. title: amount or size of sample collected examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -19974,7 +20002,9 @@ classes: description: The date of sampling title: collection date examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -20055,7 +20085,8 @@ classes: Depth can be reported as an interval for subsurface samples. title: depth, meters examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -20510,8 +20541,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -20606,6 +20635,12 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -20632,6 +20667,8 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: soil [ENVO:00001998] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -24401,7 +24438,9 @@ classes: description: The date of sampling title: collection date examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -24487,7 +24526,8 @@ classes: Depth can be reported as an interval for subsurface samples. title: depth, meters examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -24779,8 +24819,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -24850,6 +24888,12 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -24876,6 +24920,8 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: soil [ENVO:00001998] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -25531,7 +25577,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -25843,7 +25888,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -25904,7 +25950,8 @@ classes: ) of sample collected. title: amount or size of sample collected examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -27531,7 +27578,9 @@ classes: description: The date of sampling title: collection date examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -27617,7 +27666,8 @@ classes: Depth can be reported as an interval for subsurface samples. title: depth, meters examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -27909,8 +27959,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -27980,6 +28028,12 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -28006,6 +28060,8 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: soil [ENVO:00001998] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -28657,7 +28713,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -29054,7 +29109,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -29112,7 +29168,8 @@ classes: ) of sample collected. title: amount or size of sample collected examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -30261,7 +30318,9 @@ classes: description: The date of sampling title: collection date examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -30292,7 +30351,8 @@ classes: Depth can be reported as an interval for subsurface samples. title: depth, meters examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -30412,8 +30472,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -30483,6 +30541,12 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -30509,6 +30573,8 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: soil [ENVO:00001998] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -31636,7 +31702,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -31663,7 +31730,8 @@ classes: ) of sample collected. title: amount or size of sample collected examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -32227,7 +32295,9 @@ classes: description: The date of sampling title: collection date examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -32287,7 +32357,8 @@ classes: Depth can be reported as an interval for subsurface samples. title: depth, meters examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -32581,8 +32652,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -32652,6 +32721,12 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -32678,6 +32753,8 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: soil [ENVO:00001998] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -33099,7 +33176,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -33349,7 +33425,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -33376,7 +33453,8 @@ classes: ) of sample collected. title: amount or size of sample collected examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -34059,7 +34137,9 @@ classes: description: The date of sampling title: collection date examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -34119,7 +34199,8 @@ classes: Depth can be reported as an interval for subsurface samples. title: depth, meters examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -34239,8 +34320,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -34310,6 +34389,12 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -34336,6 +34421,8 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: soil [ENVO:00001998] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -36036,7 +36123,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -36063,7 +36151,8 @@ classes: ) of sample collected. title: amount or size of sample collected examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -36902,7 +36991,9 @@ classes: description: The date of sampling title: collection date examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -36962,7 +37053,8 @@ classes: Depth can be reported as an interval for subsurface samples. title: depth, meters examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -37285,8 +37377,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -37356,6 +37446,12 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -37382,6 +37478,8 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: soil [ENVO:00001998] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -38063,7 +38161,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -38402,7 +38499,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -38429,7 +38527,8 @@ classes: ) of sample collected. title: amount or size of sample collected examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -39103,9 +39202,6 @@ classes: Thoughts? I would argue this isn't an extreme unusual property. It's just a biogeochemical measurement. comments: - - Aluminum saturation is the percentage of the CEC occupies by aluminum. Like - all cations, aluminum held by the cation exchange complex is in equilibrium - with aluminum in the soil solution. - Aluminum saturation is the percentage of the CEC occupies by aluminum. Like all cations, aluminum held by the cation exchange complex is in equilibrium with aluminum in the soil solution. @@ -39136,7 +39232,6 @@ classes: Thoughts? comments: - Required when aluminum saturation is provided. - - Required when aluminum saturation is provided. examples: - value: https://doi.org/10.1371/journal.pone.0176357 from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -39401,7 +39496,9 @@ classes: description: The date of sampling title: collection date examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -39488,9 +39585,6 @@ classes: - Values provided here can be specific species of vegetation or vegetation regions - See for vegetation regions- https://education.nationalgeographic.org/resource/vegetation-region - - Values provided here can be specific species of vegetation or vegetation - regions - - See for vegetation regions- https://education.nationalgeographic.org/resource/vegetation-region examples: - value: deciduous forest - value: forest @@ -39521,7 +39615,6 @@ classes: find out how they accomplish this if provided. comments: - Required when current vegetation is provided. - - Required when current vegetation is provided. examples: - value: https://doi.org/10.1111/j.1654-109X.2011.01154.x from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -39546,7 +39639,8 @@ classes: Depth can be reported as an interval for subsurface samples. title: depth, meters examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -39692,8 +39786,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -39763,6 +39855,12 @@ classes: slot_group: sample_id_section range: EnvLocalScaleSoilEnum required: true + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -39789,6 +39887,8 @@ classes: slot_group: sample_id_section range: EnvMediumSoilEnum required: true + examples: + - value: soil [ENVO:00001998] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -39884,8 +39984,6 @@ classes: - This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot comments: - - Provide the date the fire occurred. If extended burning occurred provide - the date range. - Provide the date the fire occurred. If extended burning occurred provide the date range. examples: @@ -39918,8 +40016,6 @@ classes: - This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot comments: - - Provide the date the flood occurred. If extended flooding occurred provide - the date range. - Provide the date the flood occurred. If extended flooding occurred provide the date range. examples: @@ -40049,7 +40145,6 @@ classes: heavy metals. We don't have that ability in the submission portal. comments: - For multiple heavy metals and concentrations, separate by ; - - For multiple heavy metals and concentrations, separate by ; examples: - value: mercury 0.09 micrograms per gram - value: mercury 0.09 ug/g; chromium 0.03 ug/g @@ -40076,9 +40171,6 @@ classes: slots, map this to the MIxS slot comments: - Required when heavy metals are provided - - If different methods are used for multiple metals, indicate the metal and - method. Separate metals by ; - - Required when heavy metals are provided - If different methods are used for multiple metals, indicate the metal and method. Separate metals by ; examples: @@ -40637,7 +40729,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -40897,7 +40988,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -40924,7 +41016,8 @@ classes: ) of sample collected. title: amount or size of sample collected examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -40990,8 +41083,6 @@ classes: - mean and average are the same thing, but it seems like bad practice to not be consistent. Changed mean to average comments: - - Seasons are defined as spring (March, April, May), summer (June, July, August), - autumn (September, October, November) and winter (December, January, February). - Seasons are defined as spring (March, April, May), summer (June, July, August), autumn (September, October, November) and winter (December, January, February). examples: @@ -41046,8 +41137,6 @@ classes: comments: - Describe how samples were composited or sieved. - Use 'sample link' to indicate which samples were combined. - - Describe how samples were composited or sieved. - - Use 'sample link' to indicate which samples were combined. examples: - value: combined 2 cores - value: 4mm sieved @@ -41140,9 +41229,6 @@ classes: - This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot comments: - - Aspect is the orientation of slope, measured clockwise in degrees from 0 - to 360, where 0 is north-facing, 90 is east-facing, 180 is south-facing, - and 270 is west-facing. - Aspect is the orientation of slope, measured clockwise in degrees from 0 to 360, where 0 is north-facing, 90 is east-facing, 180 is south-facing, and 270 is west-facing. @@ -41560,7 +41646,6 @@ classes: - Should this be multi valued? How to we manage and validate this? comments: - Required if providing water content - - Required if providing water content examples: - value: J. Nat. Prod. Plant Resour., 2012, 2 (4):500-503 - value: https://dec.alaska.gov/applications/spar/webcalc/definitions.htm @@ -41909,7 +41994,9 @@ classes: description: The date of sampling title: collection date examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -41940,7 +42027,8 @@ classes: Depth can be reported as an interval for subsurface samples. title: depth, meters examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -42088,8 +42176,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -42191,6 +42277,12 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -42217,6 +42309,8 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: soil [ENVO:00001998] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -42620,7 +42714,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -42866,7 +42959,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -42893,7 +42987,8 @@ classes: ) of sample collected. title: amount or size of sample collected examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -44003,7 +44098,9 @@ classes: description: The date of sampling title: collection date examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -44091,7 +44188,8 @@ classes: Depth can be reported as an interval for subsurface samples. title: depth, meters examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -44500,8 +44598,6 @@ classes: the surface, such as an aircraft in flight or a spacecraft in orbit. title: elevation, meters comments: - - All elevations must be reported in meters. Provide the numerical portion - only. - All elevations must be reported in meters. Provide the numerical portion only. examples: @@ -44571,6 +44667,12 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -44597,6 +44699,8 @@ classes: slot_group: sample_id_section range: ControlledIdentifiedTermValue required: true + examples: + - value: soil [ENVO:00001998] notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) @@ -45272,7 +45376,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -45638,7 +45741,8 @@ classes: protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -45665,7 +45769,8 @@ classes: ) of sample collected. title: amount or size of sample collected examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -46343,20 +46448,6 @@ classes: Refers to the original material collected or to any derived sub-samples. examples: - value: Rock core CB1178(5-6) from NSW - ControlledIdentifiedTermValue: - name: ControlledIdentifiedTermValue - description: A controlled term or class from an ontology, requiring the presence - of term with an id - notes: - - To be used for slots like env_broad_scale - from_schema: https://example.com/nmdc_submission_schema - is_a: ControlledTermValue - slot_usage: - term: - name: term - domain_of: - - ControlledTermValue - required: true AttributeValue: name: AttributeValue description: The value for any value of a attribute for a sample. This object @@ -46369,20 +46460,49 @@ classes: type: name: type description: An optional string that specified the type of object. - TextValue: - name: TextValue - description: A basic string value + Activity: + name: Activity + description: a provence-generating activity from_schema: https://example.com/nmdc_submission_schema - is_a: AttributeValue + mappings: + - prov:Activity slots: - - language - TimestampValue: - name: TimestampValue - description: A value that is a timestamp. The range should be ISO-8601 + - id + - name + - started_at_time + - ended_at_time + - was_informed_by + - was_associated_with + - used + slot_usage: + id: + name: id + domain_of: + - Biosample + - Study + - Activity + - NamedThing + pattern: ^(nmdc):act-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\.[A-Za-z0-9]{1,})*(_[A-Za-z0-9_\.-]+)?$ + structured_pattern: + syntax: '{id_nmdc_prefix}:act-{id_shoulder}-{id_blade}{id_version}{id_locus}' + interpolated: true + todos: + - remove the static pattern once the minter can generate ids that satisfy + this structured_pattern and gen-linkml can expand the structured_pattern + ControlledIdentifiedTermValue: + name: ControlledIdentifiedTermValue + description: A controlled term or class from an ontology, requiring the presence + of term with an id notes: - - 'removed the following slots: year, month, day' + - To be used for slots like env_broad_scale from_schema: https://example.com/nmdc_submission_schema - is_a: AttributeValue + is_a: ControlledTermValue + slot_usage: + term: + name: term + domain_of: + - ControlledTermValue + required: true OntologyClass: name: OntologyClass notes: @@ -46400,6 +46520,13 @@ classes: - name - description - alternative_identifiers + TextValue: + name: TextValue + description: A basic string value + from_schema: https://example.com/nmdc_submission_schema + is_a: AttributeValue + slots: + - language QuantityValue: name: QuantityValue description: A simple quantity, e.g. 2cm @@ -46431,6 +46558,15 @@ classes: - QuantityValue - IntegerValue range: double + Agent: + name: Agent + description: a provence-generating agent + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:Agent + slots: + - acted_on_behalf_of + - was_informed_by ControlledTermValue: name: ControlledTermValue description: A controlled term or class from an ontology @@ -46440,6 +46576,13 @@ classes: is_a: AttributeValue slots: - term + TimestampValue: + name: TimestampValue + description: A value that is a timestamp. The range should be ISO-8601 + notes: + - 'removed the following slots: year, month, day' + from_schema: https://example.com/nmdc_submission_schema + is_a: AttributeValue GeolocationValue: name: GeolocationValue description: A normalized value for a location on the earth's surface @@ -46458,42 +46601,4 @@ classes: description: The raw value for a geolocation should follow {lat} {long} domain_of: - AttributeValue - Agent: - name: Agent - description: a provence-generating agent - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:Agent - slots: - - acted_on_behalf_of - - was_informed_by - Activity: - name: Activity - description: a provence-generating activity - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:Activity - slots: - - id - - name - - started_at_time - - ended_at_time - - was_informed_by - - was_associated_with - - used - slot_usage: - id: - name: id - domain_of: - - Biosample - - Study - - Activity - - NamedThing - pattern: ^(nmdc):act-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\.[A-Za-z0-9]{1,})*(_[A-Za-z0-9_\.-]+)?$ - structured_pattern: - syntax: '{id_nmdc_prefix}:act-{id_shoulder}-{id_blade}{id_version}{id_locus}' - interpolated: true - todos: - - remove the static pattern once the minter can generate ids that satisfy - this structured_pattern and gen-linkml can expand the structured_pattern source_file: sheets_and_friends/yaml_out/with_shuttles.yaml.raw diff --git a/sheets_and_friends/yaml_out/with_shuttles.yaml b/sheets_and_friends/yaml_out/with_shuttles.yaml index 06e68c26..fa52e9c0 100644 --- a/sheets_and_friends/yaml_out/with_shuttles.yaml +++ b/sheets_and_friends/yaml_out/with_shuttles.yaml @@ -1302,34 +1302,122 @@ enums: other: text: other description: placeholder PV descr - floor_cond_enum: - name: floor_cond_enum + ceil_type_enum: + name: ceil_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - occup_document_enum: - name: occup_document_enum + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + floor_water_mold_enum: + name: floor_water_mold_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - automated count: - text: automated count - estimate: - text: estimate - manual count: - text: manual count - videos: - text: videos - heat_deliv_loc_enum: - name: heat_deliv_loc_enum + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + specific_enum: + name: specific_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + photos: + text: photos + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard + metal: + text: metal + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + indoor_surf_enum: + name: indoor_surf_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + cabinet: + text: cabinet + ceiling: + text: ceiling + counter top: + text: counter top + door: + text: door + shelving: + text: shelving + vent cover: + text: vent cover + window: + text: window + wall: + text: wall + wall_loc_enum: + name: wall_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: north: @@ -1340,22 +1428,96 @@ enums: text: east west: text: west - gender_restroom_enum: - name: gender_restroom_enum + window_type_enum: + name: window_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - all gender: - text: all gender - female: - text: female - gender neurtral: - text: gender neurtral - male: - text: male - male and female: - text: male and female - unisex: - text: unisex + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + samp_floor_enum: + name: samp_floor_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + filter_type_enum: + name: filter_type_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + window_cover_enum: + name: window_cover_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + room_condt_enum: + name: room_condt_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + visible signs of mold/mildew: + text: visible signs of mold/mildew + room_connected_enum: + name: room_connected_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + office: + text: office + stairwell: + text: stairwell build_docs_enum: name: build_docs_enum from_schema: https://example.com/nmdc_submission_schema @@ -1386,74 +1548,58 @@ enums: text: ventilation system windows: text: windows - door_type_wood_enum: - name: door_type_wood_enum + indoor_space_enum: + name: indoor_space_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - bettened and ledged: - text: bettened and ledged - battened: - text: battened - ledged and braced: - text: ledged and braced - ledged and framed: - text: ledged and framed - ledged, braced and frame: - text: ledged, braced and frame - framed and paneled: - text: framed and paneled - glashed or sash: - text: glashed or sash - flush: - text: flush - louvered: - text: louvered - wire gauged: - text: wire gauged - surf_material_enum: - name: surf_material_enum + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator + window_loc_enum: + name: window_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass - metal: - text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile - vinyl: - text: vinyl - wood: - text: wood - furniture_enum: - name: furniture_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + ext_wall_orient_enum: + name: ext_wall_orient_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest drawings_enum: name: drawings_enum from_schema: https://example.com/nmdc_submission_schema @@ -1496,170 +1642,174 @@ enums: text: sunny windy: text: windy - weekday_enum: - name: weekday_enum + rel_samp_loc_enum: + name: rel_samp_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday - window_mat_enum: - name: window_mat_enum + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat + door_mat_enum: + name: door_mat_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - clad: - text: clad + aluminum: + text: aluminum + cellular PVC: + text: cellular PVC + engineered plastic: + text: engineered plastic + fiberboard: + text: fiberboard fiberglass: text: fiberglass metal: text: metal + thermoplastic alloy: + text: thermoplastic alloy vinyl: text: vinyl wood: text: wood - samp_floor_enum: - name: samp_floor_enum + wood/plastic composite: + text: wood/plastic composite + room_type_enum: + name: room_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + private office: + text: private office + open office: + text: open office + stairwell: + text: stairwell + ',restroom': + text: ',restroom' lobby: text: lobby - door_type_metal_enum: - name: door_type_metal_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate - ceil_finish_mat_enum: - name: ceil_finish_mat_enum + vestibule: + text: vestibule + mechanical or electrical room: + text: mechanical or electrical room + data center: + text: data center + laboratory_wet: + text: laboratory_wet + laboratory_dry: + text: laboratory_dry + gymnasium: + text: gymnasium + natatorium: + text: natatorium + auditorium: + text: auditorium + lockers: + text: lockers + cafe: + text: cafe + warehouse: + text: warehouse + wall_finish_mat_enum: + name: wall_finish_mat_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment wood: text: wood - vis_media_enum: - name: vis_media_enum + metal: + text: metal + masonry: + text: masonry + quad_pos_enum: + name: quad_pos_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - photos: - text: photos - videos: - text: videos - commonly of the building: - text: commonly of the building - site context (adjacent buildings, vegetation, terrain, streets): - text: site context (adjacent buildings, vegetation, terrain, streets) - interiors: - text: interiors - equipment: - text: equipment - 3D scans: - text: 3D scans - room_loc_enum: - name: room_loc_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - wall_const_type_enum: - name: wall_const_type_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - surf_air_cont_enum: - name: surf_air_cont_enum + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + build_occup_type_enum: + name: build_occup_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - room_condt_enum: - name: room_condt_enum + office: + text: office + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + door_direct_enum: + name: door_direct_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - visible signs of mold/mildew: - text: visible signs of mold/mildew - door_loc_enum: - name: door_loc_enum + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + ext_window_orient_enum: + name: ext_window_orient_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: north: @@ -1670,32 +1820,56 @@ enums: text: east west: text: west - specific_enum: - name: specific_enum + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + vis_media_enum: + name: vis_media_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design photos: text: photos - substructure_type_enum: - name: substructure_type_enum + videos: + text: videos + commonly of the building: + text: commonly of the building + site context (adjacent buildings, vegetation, terrain, streets): + text: site context (adjacent buildings, vegetation, terrain, streets) + interiors: + text: interiors + equipment: + text: equipment + 3D scans: + text: 3D scans + arch_struc_enum: + name: arch_struc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement + building: + text: building + shed: + text: shed + home: + text: home + water_feat_type_enum: + name: water_feat_type_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall int_wall_cond_enum: name: int_wall_cond_enum from_schema: https://example.com/nmdc_submission_schema @@ -1710,44 +1884,80 @@ enums: text: damaged rupture: text: rupture - shading_device_type_enum: - name: shading_device_type_enum + door_type_enum: + name: door_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - bahama shutters: - text: bahama shutters - exterior roll blind: - text: exterior roll blind - gambrel awning: - text: gambrel awning - hood awning: - text: hood awning - porchroller awning: - text: porchroller awning - sarasota shutters: - text: sarasota shutters - slatted aluminum: - text: slatted aluminum - solid aluminum awning: - text: solid aluminum awning - sun screen: - text: sun screen - tree: - text: tree - trellis: - text: trellis - venetian awning: - text: venetian awning - window_type_enum: - name: window_type_enum + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + floor_struc_enum: + name: floor_struc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + window_cond_enum: + name: window_cond_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + wall_texture_enum: + name: wall_texture_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl door_cond_enum: name: door_cond_enum from_schema: https://example.com/nmdc_submission_schema @@ -1762,76 +1972,86 @@ enums: text: rupture visible wear: text: visible wear - door_mat_enum: - name: door_mat_enum + floor_cond_enum: + name: floor_cond_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - aluminum: - text: aluminum - cellular PVC: - text: cellular PVC - engineered plastic: - text: engineered plastic - fiberboard: - text: fiberboard - fiberglass: - text: fiberglass - metal: - text: metal - thermoplastic alloy: - text: thermoplastic alloy - vinyl: - text: vinyl - wood: - text: wood - wood/plastic composite: - text: wood/plastic composite - light_type_enum: - name: light_type_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + occup_document_enum: + name: occup_document_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - quad_pos_enum: - name: quad_pos_enum + automated count: + text: automated count + estimate: + text: estimate + manual count: + text: manual count + videos: + text: videos + ceil_texture_enum: + name: ceil_texture_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - indoor_space_enum: - name: indoor_space_enum + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + train_stat_loc_enum: + name: train_stat_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - bedroom: - text: bedroom - office: - text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside + train_stop_loc_enum: + name: train_stop_loc_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + end: + text: end + mid: + text: mid + downtown: + text: downtown season_use_enum: name: season_use_enum from_schema: https://example.com/nmdc_submission_schema @@ -1844,40 +2064,76 @@ enums: text: Fall Winter: text: Winter - floor_struc_enum: - name: floor_struc_enum + substructure_type_enum: + name: substructure_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + surf_material_enum: + name: surf_material_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks concrete: text: concrete - train_stat_loc_enum: - name: train_stat_loc_enum + hay bales: + text: hay bales + glass: + text: glass + metal: + text: metal + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile + vinyl: + text: vinyl + wood: + text: wood + light_type_enum: + name: light_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside - ext_window_orient_enum: - name: ext_window_orient_enum + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + window_horiz_pos_enum: + name: window_horiz_pos_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + left: + text: left + middle: + text: middle + right: + text: right + door_loc_enum: + name: door_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: north: @@ -1888,184 +2144,222 @@ enums: text: east west: text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - build_occup_type_enum: - name: build_occup_type_enum + surf_air_cont_enum: + name: surf_air_cont_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - rel_samp_loc_enum: - name: rel_samp_loc_enum + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + wall_surf_treatment_enum: + name: wall_surf_treatment_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - window_vert_pos_enum: - name: window_vert_pos_enum + painted: + text: painted + wall paper: + text: wall paper + no treatment: + text: no treatment + paneling: + text: paneling + stucco: + text: stucco + fabric: + text: fabric + door_type_wood_enum: + name: door_type_wood_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high - wall_loc_enum: - name: wall_loc_enum + bettened and ledged: + text: bettened and ledged + battened: + text: battened + ledged and braced: + text: ledged and braced + ledged and framed: + text: ledged and framed + ledged, braced and frame: + text: ledged, braced and frame + framed and paneled: + text: framed and paneled + glashed or sash: + text: glashed or sash + flush: + text: flush + louvered: + text: louvered + wire gauged: + text: wire gauged + heat_cool_type_enum: + name: heat_cool_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - indoor_surf_enum: - name: indoor_surf_enum + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + train_line_enum: + name: train_line_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - cabinet: - text: cabinet - ceiling: - text: ceiling - counter top: - text: counter top - door: - text: door - shelving: - text: shelving - vent cover: - text: vent cover - window: - text: window - wall: - text: wall - train_stop_loc_enum: - name: train_stop_loc_enum + red: + text: red + green: + text: green + orange: + text: orange + shading_device_type_enum: + name: shading_device_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - end: - text: end - mid: - text: mid - downtown: - text: downtown - water_feat_type_enum: - name: water_feat_type_enum + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning + door_move_enum: + name: door_move_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - wall_texture_enum: - name: wall_texture_enum + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging + wall_const_type_enum: + name: wall_const_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - ? '' - : text: '' - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - wall_surf_treatment_enum: - name: wall_surf_treatment_enum + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive + room_samp_pos_enum: + name: room_samp_pos_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + weekday_enum: + name: weekday_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - painted: - text: painted - wall paper: - text: wall paper - no treatment: - text: no treatment - paneling: - text: paneling - stucco: - text: stucco - fabric: - text: fabric - arch_struc_enum: - name: arch_struc_enum + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + gender_restroom_enum: + name: gender_restroom_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - ext_wall_orient_enum: - name: ext_wall_orient_enum + all gender: + text: all gender + female: + text: female + gender neurtral: + text: gender neurtral + male: + text: male + male and female: + text: male and female + unisex: + text: unisex + shading_device_cond_enum: + name: shading_device_cond_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + heat_deliv_loc_enum: + name: heat_deliv_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: north: @@ -2076,14 +2370,20 @@ enums: text: east west: text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest + window_mat_enum: + name: window_mat_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + clad: + text: clad + fiberglass: + text: fiberglass + metal: + text: metal + vinyl: + text: vinyl + wood: + text: wood mech_struc_enum: name: mech_struc_enum from_schema: https://example.com/nmdc_submission_schema @@ -2106,92 +2406,38 @@ enums: text: car bus: text: bus - door_move_enum: - name: door_move_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging - wall_finish_mat_enum: - name: wall_finish_mat_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood - metal: - text: metal - masonry: - text: masonry - door_direct_enum: - name: door_direct_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - window_cover_enum: - name: window_cover_enum + room_loc_enum: + name: room_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - heat_cool_type_enum: - name: heat_cool_type_enum + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + furniture_enum: + name: furniture_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove - door_type_enum: - name: door_type_enum + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks + handidness_enum: + name: handidness_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - composite: - text: composite - metal: - text: metal - wooden: - text: wooden + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness floor_finish_mat_enum: name: floor_finish_mat_enum from_schema: https://example.com/nmdc_submission_schema @@ -2232,176 +2478,6 @@ enums: text: paint none or unfinished: text: none or unfinished - train_line_enum: - name: train_line_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - room_type_enum: - name: room_type_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - private office: - text: private office - open office: - text: open office - stairwell: - text: stairwell - ',restroom': - text: ',restroom' - lobby: - text: lobby - vestibule: - text: vestibule - mechanical or electrical room: - text: mechanical or electrical room - data center: - text: data center - laboratory_wet: - text: laboratory_wet - laboratory_dry: - text: laboratory_dry - gymnasium: - text: gymnasium - natatorium: - text: natatorium - auditorium: - text: auditorium - lockers: - text: lockers - cafe: - text: cafe - warehouse: - text: warehouse - ceil_type_enum: - name: ceil_type_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - building_setting_enum: - name: building_setting_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - room_connected_enum: - name: room_connected_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - office: - text: office - stairwell: - text: stairwell - room_samp_pos_enum: - name: room_samp_pos_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center - shading_device_cond_enum: - name: shading_device_cond_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - window_cond_enum: - name: window_cond_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear door_comp_type_enum: name: door_comp_type_enum from_schema: https://example.com/nmdc_submission_schema @@ -2414,62 +2490,20 @@ enums: text: sliding telescopic: text: telescopic - handidness_enum: - name: handidness_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - window_horiz_pos_enum: - name: window_horiz_pos_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - left: - text: left - middle: - text: middle - right: - text: right - floor_water_mold_enum: - name: floor_water_mold_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - window_loc_enum: - name: window_loc_enum + door_type_metal_enum: + name: door_type_metal_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate ceil_cond_enum: name: ceil_cond_enum from_schema: https://example.com/nmdc_submission_schema @@ -2484,52 +2518,74 @@ enums: text: damaged rupture: text: rupture - filter_type_enum: - name: filter_type_enum + building_setting_enum: + name: building_setting_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - ceil_texture_enum: - name: ceil_texture_enum + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + samp_collect_point_enum: + name: samp_collect_point_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other + hcr_enum: + name: hcr_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir + other: + text: other + rel_to_oxygen_enum: + name: rel_to_oxygen_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + aerobe: + text: aerobe + anaerobe: + text: anaerobe + facultative: + text: facultative + microaerophilic: + text: microaerophilic + microanaerobe: + text: microanaerobe + obligate aerobe: + text: obligate aerobe + obligate anaerobe: + text: obligate anaerobe hc_produced_enum: name: hc_produced_enum from_schema: https://example.com/nmdc_submission_schema @@ -2582,54 +2638,44 @@ enums: text: Other - Volcanic other: text: other - samp_subtype_enum: - name: samp_subtype_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other - rel_to_oxygen_enum: - name: rel_to_oxygen_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - aerobe: - text: aerobe - anaerobe: - text: anaerobe - facultative: - text: facultative - microaerophilic: - text: microaerophilic - microanaerobe: - text: microanaerobe - obligate aerobe: - text: obligate aerobe - obligate anaerobe: - text: obligate anaerobe - samp_collect_point_enum: - name: samp_collect_point_enum + hcr_geol_age_enum: + name: hcr_geol_age_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic other: text: other lithology_enum: @@ -2662,24 +2708,18 @@ enums: text: Volcanic other: text: other - hcr_enum: - name: hcr_enum + samp_subtype_enum: + name: samp_subtype_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable other: text: other oxy_stat_samp_enum: @@ -2692,44 +2732,46 @@ enums: text: anaerobic other: text: other - hcr_geol_age_enum: - name: hcr_geol_age_enum + sr_lithology_enum: + name: sr_lithology_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous + other: + text: other + sr_kerog_type_enum: + name: sr_kerog_type_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + sr_dep_env_enum: + name: sr_dep_env_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine other: text: other sr_geol_age_enum: @@ -2772,48 +2814,38 @@ enums: text: Triassic other: text: other - sr_kerog_type_enum: - name: sr_kerog_type_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV - other: - text: other - sr_lithology_enum: - name: sr_lithology_enum + profile_position_enum: + name: profile_position_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous - other: - text: other - sr_dep_env_enum: - name: sr_dep_env_enum + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope + soil_horizon_enum: + name: soil_horizon_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost fao_class_enum: name: fao_class_enum from_schema: https://example.com/nmdc_submission_schema @@ -2870,20 +2902,6 @@ enums: text: Vertisols Yermosols: text: Yermosols - profile_position_enum: - name: profile_position_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope biotic_relationship_enum: name: biotic_relationship_enum from_schema: https://example.com/nmdc_submission_schema @@ -2896,62 +2914,6 @@ enums: text: commensal symbiont: text: symbiont - soil_horizon_enum: - name: soil_horizon_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - drainage_class_enum: - name: drainage_class_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - very poorly: - text: very poorly - poorly: - text: poorly - somewhat poorly: - text: somewhat poorly - moderately well: - text: moderately well - well: - text: well - excessively drained: - text: excessively drained - tillage_enum: - name: tillage_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough cur_land_use_enum: name: cur_land_use_enum from_schema: https://example.com/nmdc_submission_schema @@ -3027,6 +2989,94 @@ enums: text: swamp (permanent or semi-permanent water body dominated by woody plants) crop trees (nuts,fruit,christmas trees,nursery trees): text: crop trees (nuts,fruit,christmas trees,nursery trees) + tillage_enum: + name: tillage_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + drainage_class_enum: + name: drainage_class_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + very poorly: + text: very poorly + poorly: + text: poorly + somewhat poorly: + text: somewhat poorly + moderately well: + text: moderately well + well: + text: well + excessively drained: + text: excessively drained + biol_stat_enum: + name: biol_stat_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + samp_capt_status_enum: + name: samp_capt_status_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample + other: + text: other + samp_dis_stage_enum: + name: samp_dis_stage_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + dissemination: + text: dissemination + growth and reproduction: + text: growth and reproduction + infection: + text: infection + inoculation: + text: inoculation + penetration: + text: penetration + other: + text: other growth_habit_enum: name: growth_habit_enum from_schema: https://example.com/nmdc_submission_schema @@ -3101,56 +3151,18 @@ enums: text: Trioecious Unisexual: text: Unisexual - biol_stat_enum: - name: biol_stat_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - samp_capt_status_enum: - name: samp_capt_status_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample - other: - text: other - samp_dis_stage_enum: - name: samp_dis_stage_enum + tidal_stage_enum: + name: tidal_stage_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - dissemination: - text: dissemination - growth and reproduction: - text: growth and reproduction - infection: - text: infection - inoculation: - text: inoculation - penetration: - text: penetration - other: - text: other + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide sediment_type_enum: name: sediment_type_enum from_schema: https://example.com/nmdc_submission_schema @@ -3163,18 +3175,6 @@ enums: text: hydrogenous lithogenous: text: lithogenous - tidal_stage_enum: - name: tidal_stage_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide host_sex_enum: name: host_sex_enum from_schema: https://example.com/nmdc_submission_schema @@ -3237,7 +3237,9 @@ slots: - Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable. examples: - - value: 2021-04-15, 2021-04 and 2021 are all acceptable. + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://example.com/nmdc_submission_schema rank: 2 string_serialization: '{date, arbitrary precision}' @@ -3253,7 +3255,8 @@ slots: comments: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema rank: 1 string_serialization: '{time, seconds optional}' @@ -3270,7 +3273,8 @@ slots: comments: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema rank: 3 string_serialization: '{time, seconds optional}' @@ -4141,7 +4145,9 @@ slots: - Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable. examples: - - value: 2021-04-15, 2021-04 and 2021 are all acceptable. + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://example.com/nmdc_submission_schema rank: 4 string_serialization: '{date, arbitrary precision}' @@ -4157,7 +4163,8 @@ slots: comments: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema rank: 5 string_serialization: '{time, seconds optional}' @@ -15177,71 +15184,31 @@ slots: - zinc is_a: attribute range: QuantityValue - has_raw_value: - name: has_raw_value - description: The value that was specified for an annotation in raw form, i.e. - a string. E.g. "2 cm" or "2-4 cm" - from_schema: https://example.com/nmdc_submission_schema - domain: AttributeValue - multivalued: false - range: string - was_generated_by: - name: was_generated_by - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:wasGeneratedBy - range: Activity - investigation field: - name: investigation field - description: field describing aspect of the investigation/study to which the sample - belongs - from_schema: https://example.com/nmdc_submission_schema - abstract: true - started_at_time: - name: started_at_time - notes: - - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ - It may not be complete, but it is good enough for now.' + has_unit: + name: has_unit + description: Links a QuantityValue to a unit from_schema: https://example.com/nmdc_submission_schema + aliases: + - scale mappings: - - prov:startedAtTime - range: datetime - pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ - nucleic acid sequence source field: - name: nucleic acid sequence source field - from_schema: https://example.com/nmdc_submission_schema - abstract: true - name: - name: name - description: A human readable label for an entity + - qud:unit + - schema:unitCode + range: unit + description: + name: description + description: a human-readable description of a thing from_schema: https://example.com/nmdc_submission_schema + slot_uri: dcterms:description range: string - core field: - name: core field - description: basic fields - from_schema: https://example.com/nmdc_submission_schema - abstract: true - has_maximum_numeric_value: - name: has_maximum_numeric_value - description: The maximum value part, expressed as number, of the quantity value - when the value covers a range. - from_schema: https://example.com/nmdc_submission_schema - is_a: has_numeric_value - language: - name: language - description: Should use ISO 639-1 code e.g. "en", "fr" - from_schema: https://example.com/nmdc_submission_schema - range: language code - ended_at_time: - name: ended_at_time - notes: - - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ - It may not be complete, but it is good enough for now.' + longitude: + name: longitude + description: longitude from_schema: https://example.com/nmdc_submission_schema mappings: - - prov:endedAtTime - range: datetime - pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ + - schema:longitude + domain: GeolocationValue + slot_uri: wgs84:long + range: decimal degree term: name: term description: pointer to an ontology class @@ -15251,33 +15218,32 @@ slots: domain: ControlledTermValue range: OntologyClass inlined: true + has_raw_value: + name: has_raw_value + description: The value that was specified for an annotation in raw form, i.e. + a string. E.g. "2 cm" or "2-4 cm" + from_schema: https://example.com/nmdc_submission_schema + domain: AttributeValue + multivalued: false + range: string + core field: + name: core field + description: basic fields + from_schema: https://example.com/nmdc_submission_schema + abstract: true alternative_identifiers: name: alternative_identifiers description: A list of alternative identifiers for the entity. from_schema: https://example.com/nmdc_submission_schema multivalued: true range: string - has_numeric_value: - name: has_numeric_value - description: Links a quantity value to a number - from_schema: https://example.com/nmdc_submission_schema - mappings: - - qud:quantityValue - - schema:value - multivalued: false - range: float - acted_on_behalf_of: - name: acted_on_behalf_of - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:actedOnBehalfOf - range: Agent - has_minimum_numeric_value: - name: has_minimum_numeric_value - description: The minimum value part, expressed as number, of the quantity value - when the value covers a range. + gold_path_field: + name: gold_path_field + description: This is a grouping for any of the gold path fields from_schema: https://example.com/nmdc_submission_schema - is_a: has_numeric_value + is_a: attribute + abstract: true + range: string id: name: id description: A unique identifier for a thing. Must be either a CURIE shorthand @@ -15295,12 +15261,28 @@ slots: description: https://github.com/microbiomedata/nmdc-schema/pull/499#discussion_r1018499248 from_schema: https://example.com/nmdc_submission_schema identifier: true + acted_on_behalf_of: + name: acted_on_behalf_of + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:actedOnBehalfOf + range: Agent + nucleic acid sequence source field: + name: nucleic acid sequence source field + from_schema: https://example.com/nmdc_submission_schema + abstract: true was_associated_with: name: was_associated_with from_schema: https://example.com/nmdc_submission_schema mappings: - prov:wasAssociatedWith range: Agent + has_maximum_numeric_value: + name: has_maximum_numeric_value + description: The maximum value part, expressed as number, of the quantity value + when the value covers a range. + from_schema: https://example.com/nmdc_submission_schema + is_a: has_numeric_value attribute: name: attribute description: 'A attribute of a biosample. Examples: depth, habitat, material. @@ -15313,38 +15295,17 @@ slots: - key - characteristic abstract: true - was_informed_by: - name: was_informed_by - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:wasInformedBy - range: Activity - longitude: - name: longitude - description: longitude + used: + name: used from_schema: https://example.com/nmdc_submission_schema mappings: - - schema:longitude - domain: GeolocationValue - slot_uri: wgs84:long - range: decimal degree - gold_path_field: - name: gold_path_field - description: This is a grouping for any of the gold path fields + - prov:used + domain: Activity + name: + name: name + description: A human readable label for an entity from_schema: https://example.com/nmdc_submission_schema - is_a: attribute - abstract: true range: string - has_unit: - name: has_unit - description: Links a QuantityValue to a unit - from_schema: https://example.com/nmdc_submission_schema - aliases: - - scale - mappings: - - qud:unit - - schema:unitCode - range: unit latitude: name: latitude description: latitude @@ -15354,23 +15315,69 @@ slots: domain: GeolocationValue slot_uri: wgs84:lat range: decimal degree - used: - name: used + language: + name: language + description: Should use ISO 639-1 code e.g. "en", "fr" + from_schema: https://example.com/nmdc_submission_schema + range: language code + has_numeric_value: + name: has_numeric_value + description: Links a quantity value to a number from_schema: https://example.com/nmdc_submission_schema mappings: - - prov:used - domain: Activity + - qud:quantityValue + - schema:value + multivalued: false + range: float + ended_at_time: + name: ended_at_time + notes: + - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ + It may not be complete, but it is good enough for now.' + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:endedAtTime + range: datetime + pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ + has_minimum_numeric_value: + name: has_minimum_numeric_value + description: The minimum value part, expressed as number, of the quantity value + when the value covers a range. + from_schema: https://example.com/nmdc_submission_schema + is_a: has_numeric_value + was_generated_by: + name: was_generated_by + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:wasGeneratedBy + range: Activity environment field: name: environment field description: field describing environmental aspect of a sample from_schema: https://example.com/nmdc_submission_schema abstract: true - description: - name: description - description: a human-readable description of a thing + started_at_time: + name: started_at_time + notes: + - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ + It may not be complete, but it is good enough for now.' from_schema: https://example.com/nmdc_submission_schema - slot_uri: dcterms:description - range: string + mappings: + - prov:startedAtTime + range: datetime + pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ + investigation field: + name: investigation field + description: field describing aspect of the investigation/study to which the sample + belongs + from_schema: https://example.com/nmdc_submission_schema + abstract: true + was_informed_by: + name: was_informed_by + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:wasInformedBy + range: Activity classes: AirInterface: name: AirInterface @@ -45420,20 +45427,6 @@ classes: - Biosample slot_group: sample_id_section range: TextValue - ControlledIdentifiedTermValue: - name: ControlledIdentifiedTermValue - description: A controlled term or class from an ontology, requiring the presence - of term with an id - notes: - - To be used for slots like env_broad_scale - from_schema: https://example.com/nmdc_submission_schema - is_a: ControlledTermValue - slot_usage: - term: - name: term - domain_of: - - ControlledTermValue - required: true AttributeValue: name: AttributeValue description: The value for any value of a attribute for a sample. This object @@ -45446,20 +45439,49 @@ classes: type: name: type description: An optional string that specified the type of object. - TextValue: - name: TextValue - description: A basic string value + Activity: + name: Activity + description: a provence-generating activity from_schema: https://example.com/nmdc_submission_schema - is_a: AttributeValue + mappings: + - prov:Activity slots: - - language - TimestampValue: - name: TimestampValue - description: A value that is a timestamp. The range should be ISO-8601 + - id + - name + - started_at_time + - ended_at_time + - was_informed_by + - was_associated_with + - used + slot_usage: + id: + name: id + domain_of: + - Biosample + - Study + - Activity + - NamedThing + pattern: ^(nmdc):act-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\.[A-Za-z0-9]{1,})*(_[A-Za-z0-9_\.-]+)?$ + structured_pattern: + syntax: '{id_nmdc_prefix}:act-{id_shoulder}-{id_blade}{id_version}{id_locus}' + interpolated: true + todos: + - remove the static pattern once the minter can generate ids that satisfy + this structured_pattern and gen-linkml can expand the structured_pattern + ControlledIdentifiedTermValue: + name: ControlledIdentifiedTermValue + description: A controlled term or class from an ontology, requiring the presence + of term with an id notes: - - 'removed the following slots: year, month, day' + - To be used for slots like env_broad_scale from_schema: https://example.com/nmdc_submission_schema - is_a: AttributeValue + is_a: ControlledTermValue + slot_usage: + term: + name: term + domain_of: + - ControlledTermValue + required: true OntologyClass: name: OntologyClass notes: @@ -45477,6 +45499,13 @@ classes: - name - description - alternative_identifiers + TextValue: + name: TextValue + description: A basic string value + from_schema: https://example.com/nmdc_submission_schema + is_a: AttributeValue + slots: + - language QuantityValue: name: QuantityValue description: A simple quantity, e.g. 2cm @@ -45508,6 +45537,15 @@ classes: - QuantityValue - IntegerValue range: double + Agent: + name: Agent + description: a provence-generating agent + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:Agent + slots: + - acted_on_behalf_of + - was_informed_by ControlledTermValue: name: ControlledTermValue description: A controlled term or class from an ontology @@ -45517,6 +45555,13 @@ classes: is_a: AttributeValue slots: - term + TimestampValue: + name: TimestampValue + description: A value that is a timestamp. The range should be ISO-8601 + notes: + - 'removed the following slots: year, month, day' + from_schema: https://example.com/nmdc_submission_schema + is_a: AttributeValue GeolocationValue: name: GeolocationValue description: A normalized value for a location on the earth's surface @@ -45535,43 +45580,5 @@ classes: description: The raw value for a geolocation should follow {lat} {long} domain_of: - AttributeValue - Agent: - name: Agent - description: a provence-generating agent - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:Agent - slots: - - acted_on_behalf_of - - was_informed_by - Activity: - name: Activity - description: a provence-generating activity - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:Activity - slots: - - id - - name - - started_at_time - - ended_at_time - - was_informed_by - - was_associated_with - - used - slot_usage: - id: - name: id - domain_of: - - Biosample - - Study - - Activity - - NamedThing - pattern: ^(nmdc):act-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\.[A-Za-z0-9]{1,})*(_[A-Za-z0-9_\.-]+)?$ - structured_pattern: - syntax: '{id_nmdc_prefix}:act-{id_shoulder}-{id_blade}{id_version}{id_locus}' - interpolated: true - todos: - - remove the static pattern once the minter can generate ids that satisfy - this structured_pattern and gen-linkml can expand the structured_pattern source_file: sheets_and_friends/yaml_out/with_shuttles.yaml.raw diff --git a/sheets_and_friends/yaml_out/with_shuttles.yaml.raw b/sheets_and_friends/yaml_out/with_shuttles.yaml.raw index a6e47d4d..21e33317 100644 --- a/sheets_and_friends/yaml_out/with_shuttles.yaml.raw +++ b/sheets_and_friends/yaml_out/with_shuttles.yaml.raw @@ -1302,34 +1302,122 @@ enums: other: text: other description: placeholder PV descr - floor_cond_enum: - name: floor_cond_enum + ceil_type_enum: + name: ceil_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - occup_document_enum: - name: occup_document_enum + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + floor_water_mold_enum: + name: floor_water_mold_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - automated count: - text: automated count - estimate: - text: estimate - manual count: - text: manual count - videos: - text: videos - heat_deliv_loc_enum: - name: heat_deliv_loc_enum + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + specific_enum: + name: specific_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + photos: + text: photos + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard + metal: + text: metal + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + indoor_surf_enum: + name: indoor_surf_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + cabinet: + text: cabinet + ceiling: + text: ceiling + counter top: + text: counter top + door: + text: door + shelving: + text: shelving + vent cover: + text: vent cover + window: + text: window + wall: + text: wall + wall_loc_enum: + name: wall_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: north: @@ -1340,22 +1428,96 @@ enums: text: east west: text: west - gender_restroom_enum: - name: gender_restroom_enum + window_type_enum: + name: window_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - all gender: - text: all gender - female: - text: female - gender neurtral: - text: gender neurtral - male: - text: male - male and female: - text: male and female - unisex: - text: unisex + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + samp_floor_enum: + name: samp_floor_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + filter_type_enum: + name: filter_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + window_cover_enum: + name: window_cover_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + room_condt_enum: + name: room_condt_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + visible signs of mold/mildew: + text: visible signs of mold/mildew + room_connected_enum: + name: room_connected_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + office: + text: office + stairwell: + text: stairwell build_docs_enum: name: build_docs_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -1386,74 +1548,58 @@ enums: text: ventilation system windows: text: windows - door_type_wood_enum: - name: door_type_wood_enum + indoor_space_enum: + name: indoor_space_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - bettened and ledged: - text: bettened and ledged - battened: - text: battened - ledged and braced: - text: ledged and braced - ledged and framed: - text: ledged and framed - ledged, braced and frame: - text: ledged, braced and frame - framed and paneled: - text: framed and paneled - glashed or sash: - text: glashed or sash - flush: - text: flush - louvered: - text: louvered - wire gauged: - text: wire gauged - surf_material_enum: - name: surf_material_enum + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator + window_loc_enum: + name: window_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass - metal: - text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile - vinyl: - text: vinyl - wood: - text: wood - furniture_enum: - name: furniture_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + ext_wall_orient_enum: + name: ext_wall_orient_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest drawings_enum: name: drawings_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -1496,170 +1642,174 @@ enums: text: sunny windy: text: windy - weekday_enum: - name: weekday_enum + rel_samp_loc_enum: + name: rel_samp_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday - window_mat_enum: - name: window_mat_enum + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat + door_mat_enum: + name: door_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - clad: - text: clad + aluminum: + text: aluminum + cellular PVC: + text: cellular PVC + engineered plastic: + text: engineered plastic + fiberboard: + text: fiberboard fiberglass: text: fiberglass metal: text: metal + thermoplastic alloy: + text: thermoplastic alloy vinyl: text: vinyl wood: text: wood - samp_floor_enum: - name: samp_floor_enum + wood/plastic composite: + text: wood/plastic composite + room_type_enum: + name: room_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + private office: + text: private office + open office: + text: open office + stairwell: + text: stairwell + ',restroom': + text: ',restroom' lobby: text: lobby - door_type_metal_enum: - name: door_type_metal_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate - ceil_finish_mat_enum: - name: ceil_finish_mat_enum + vestibule: + text: vestibule + mechanical or electrical room: + text: mechanical or electrical room + data center: + text: data center + laboratory_wet: + text: laboratory_wet + laboratory_dry: + text: laboratory_dry + gymnasium: + text: gymnasium + natatorium: + text: natatorium + auditorium: + text: auditorium + lockers: + text: lockers + cafe: + text: cafe + warehouse: + text: warehouse + wall_finish_mat_enum: + name: wall_finish_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment wood: text: wood - vis_media_enum: - name: vis_media_enum + metal: + text: metal + masonry: + text: masonry + quad_pos_enum: + name: quad_pos_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - photos: - text: photos - videos: - text: videos - commonly of the building: - text: commonly of the building - site context (adjacent buildings, vegetation, terrain, streets): - text: site context (adjacent buildings, vegetation, terrain, streets) - interiors: - text: interiors - equipment: - text: equipment - 3D scans: - text: 3D scans - room_loc_enum: - name: room_loc_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - wall_const_type_enum: - name: wall_const_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - surf_air_cont_enum: - name: surf_air_cont_enum + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + build_occup_type_enum: + name: build_occup_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - room_condt_enum: - name: room_condt_enum + office: + text: office + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + door_direct_enum: + name: door_direct_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - visible signs of mold/mildew: - text: visible signs of mold/mildew - door_loc_enum: - name: door_loc_enum + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + ext_window_orient_enum: + name: ext_window_orient_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: north: @@ -1670,32 +1820,56 @@ enums: text: east west: text: west - specific_enum: - name: specific_enum + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + vis_media_enum: + name: vis_media_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design photos: text: photos - substructure_type_enum: - name: substructure_type_enum + videos: + text: videos + commonly of the building: + text: commonly of the building + site context (adjacent buildings, vegetation, terrain, streets): + text: site context (adjacent buildings, vegetation, terrain, streets) + interiors: + text: interiors + equipment: + text: equipment + 3D scans: + text: 3D scans + arch_struc_enum: + name: arch_struc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement + building: + text: building + shed: + text: shed + home: + text: home + water_feat_type_enum: + name: water_feat_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall int_wall_cond_enum: name: int_wall_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -1710,44 +1884,80 @@ enums: text: damaged rupture: text: rupture - shading_device_type_enum: - name: shading_device_type_enum + door_type_enum: + name: door_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - bahama shutters: - text: bahama shutters - exterior roll blind: - text: exterior roll blind - gambrel awning: - text: gambrel awning - hood awning: - text: hood awning - porchroller awning: - text: porchroller awning - sarasota shutters: - text: sarasota shutters - slatted aluminum: - text: slatted aluminum - solid aluminum awning: - text: solid aluminum awning - sun screen: - text: sun screen - tree: - text: tree - trellis: - text: trellis - venetian awning: - text: venetian awning - window_type_enum: - name: window_type_enum + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + floor_struc_enum: + name: floor_struc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + window_cond_enum: + name: window_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + wall_texture_enum: + name: wall_texture_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + ? '' + : text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl door_cond_enum: name: door_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -1762,76 +1972,86 @@ enums: text: rupture visible wear: text: visible wear - door_mat_enum: - name: door_mat_enum + floor_cond_enum: + name: floor_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - aluminum: - text: aluminum - cellular PVC: - text: cellular PVC - engineered plastic: - text: engineered plastic - fiberboard: - text: fiberboard - fiberglass: - text: fiberglass - metal: - text: metal - thermoplastic alloy: - text: thermoplastic alloy - vinyl: - text: vinyl - wood: - text: wood - wood/plastic composite: - text: wood/plastic composite - light_type_enum: - name: light_type_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + occup_document_enum: + name: occup_document_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - quad_pos_enum: - name: quad_pos_enum + automated count: + text: automated count + estimate: + text: estimate + manual count: + text: manual count + videos: + text: videos + ceil_texture_enum: + name: ceil_texture_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - indoor_space_enum: - name: indoor_space_enum + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + train_stat_loc_enum: + name: train_stat_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - bedroom: - text: bedroom - office: - text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside + train_stop_loc_enum: + name: train_stop_loc_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + end: + text: end + mid: + text: mid + downtown: + text: downtown season_use_enum: name: season_use_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -1844,40 +2064,76 @@ enums: text: Fall Winter: text: Winter - floor_struc_enum: - name: floor_struc_enum + substructure_type_enum: + name: substructure_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + surf_material_enum: + name: surf_material_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks concrete: text: concrete - train_stat_loc_enum: - name: train_stat_loc_enum + hay bales: + text: hay bales + glass: + text: glass + metal: + text: metal + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile + vinyl: + text: vinyl + wood: + text: wood + light_type_enum: + name: light_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside - ext_window_orient_enum: - name: ext_window_orient_enum + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + window_horiz_pos_enum: + name: window_horiz_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + left: + text: left + middle: + text: middle + right: + text: right + door_loc_enum: + name: door_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: north: @@ -1888,184 +2144,222 @@ enums: text: east west: text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - build_occup_type_enum: - name: build_occup_type_enum + surf_air_cont_enum: + name: surf_air_cont_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - rel_samp_loc_enum: - name: rel_samp_loc_enum + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + wall_surf_treatment_enum: + name: wall_surf_treatment_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - window_vert_pos_enum: - name: window_vert_pos_enum + painted: + text: painted + wall paper: + text: wall paper + no treatment: + text: no treatment + paneling: + text: paneling + stucco: + text: stucco + fabric: + text: fabric + door_type_wood_enum: + name: door_type_wood_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high - wall_loc_enum: - name: wall_loc_enum + bettened and ledged: + text: bettened and ledged + battened: + text: battened + ledged and braced: + text: ledged and braced + ledged and framed: + text: ledged and framed + ledged, braced and frame: + text: ledged, braced and frame + framed and paneled: + text: framed and paneled + glashed or sash: + text: glashed or sash + flush: + text: flush + louvered: + text: louvered + wire gauged: + text: wire gauged + heat_cool_type_enum: + name: heat_cool_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - indoor_surf_enum: - name: indoor_surf_enum + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + train_line_enum: + name: train_line_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - cabinet: - text: cabinet - ceiling: - text: ceiling - counter top: - text: counter top - door: - text: door - shelving: - text: shelving - vent cover: - text: vent cover - window: - text: window - wall: - text: wall - train_stop_loc_enum: - name: train_stop_loc_enum + red: + text: red + green: + text: green + orange: + text: orange + shading_device_type_enum: + name: shading_device_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - end: - text: end - mid: - text: mid - downtown: - text: downtown - water_feat_type_enum: - name: water_feat_type_enum + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning + door_move_enum: + name: door_move_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - wall_texture_enum: - name: wall_texture_enum + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging + wall_const_type_enum: + name: wall_const_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - ? '' - : text: '' - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - wall_surf_treatment_enum: - name: wall_surf_treatment_enum + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive + room_samp_pos_enum: + name: room_samp_pos_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + weekday_enum: + name: weekday_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - painted: - text: painted - wall paper: - text: wall paper - no treatment: - text: no treatment - paneling: - text: paneling - stucco: - text: stucco - fabric: - text: fabric - arch_struc_enum: - name: arch_struc_enum + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + gender_restroom_enum: + name: gender_restroom_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - ext_wall_orient_enum: - name: ext_wall_orient_enum + all gender: + text: all gender + female: + text: female + gender neurtral: + text: gender neurtral + male: + text: male + male and female: + text: male and female + unisex: + text: unisex + shading_device_cond_enum: + name: shading_device_cond_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + heat_deliv_loc_enum: + name: heat_deliv_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: north: @@ -2076,14 +2370,20 @@ enums: text: east west: text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest + window_mat_enum: + name: window_mat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + clad: + text: clad + fiberglass: + text: fiberglass + metal: + text: metal + vinyl: + text: vinyl + wood: + text: wood mech_struc_enum: name: mech_struc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2106,92 +2406,38 @@ enums: text: car bus: text: bus - door_move_enum: - name: door_move_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging - wall_finish_mat_enum: - name: wall_finish_mat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood - metal: - text: metal - masonry: - text: masonry - door_direct_enum: - name: door_direct_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - window_cover_enum: - name: window_cover_enum + room_loc_enum: + name: room_loc_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - heat_cool_type_enum: - name: heat_cool_type_enum + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + furniture_enum: + name: furniture_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove - door_type_enum: - name: door_type_enum + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks + handidness_enum: + name: handidness_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - composite: - text: composite - metal: - text: metal - wooden: - text: wooden + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness floor_finish_mat_enum: name: floor_finish_mat_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2232,176 +2478,6 @@ enums: text: paint none or unfinished: text: none or unfinished - train_line_enum: - name: train_line_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - room_type_enum: - name: room_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - private office: - text: private office - open office: - text: open office - stairwell: - text: stairwell - ',restroom': - text: ',restroom' - lobby: - text: lobby - vestibule: - text: vestibule - mechanical or electrical room: - text: mechanical or electrical room - data center: - text: data center - laboratory_wet: - text: laboratory_wet - laboratory_dry: - text: laboratory_dry - gymnasium: - text: gymnasium - natatorium: - text: natatorium - auditorium: - text: auditorium - lockers: - text: lockers - cafe: - text: cafe - warehouse: - text: warehouse - ceil_type_enum: - name: ceil_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - building_setting_enum: - name: building_setting_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - room_connected_enum: - name: room_connected_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - office: - text: office - stairwell: - text: stairwell - room_samp_pos_enum: - name: room_samp_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center - shading_device_cond_enum: - name: shading_device_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - window_cond_enum: - name: window_cond_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear door_comp_type_enum: name: door_comp_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2414,62 +2490,20 @@ enums: text: sliding telescopic: text: telescopic - handidness_enum: - name: handidness_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - window_horiz_pos_enum: - name: window_horiz_pos_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - left: - text: left - middle: - text: middle - right: - text: right - floor_water_mold_enum: - name: floor_water_mold_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - window_loc_enum: - name: window_loc_enum + door_type_metal_enum: + name: door_type_metal_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate ceil_cond_enum: name: ceil_cond_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2484,52 +2518,74 @@ enums: text: damaged rupture: text: rupture - filter_type_enum: - name: filter_type_enum + building_setting_enum: + name: building_setting_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - ceil_texture_enum: - name: ceil_texture_enum + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + samp_collect_point_enum: + name: samp_collect_point_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other + hcr_enum: + name: hcr_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir + other: + text: other + rel_to_oxygen_enum: + name: rel_to_oxygen_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + aerobe: + text: aerobe + anaerobe: + text: anaerobe + facultative: + text: facultative + microaerophilic: + text: microaerophilic + microanaerobe: + text: microanaerobe + obligate aerobe: + text: obligate aerobe + obligate anaerobe: + text: obligate anaerobe hc_produced_enum: name: hc_produced_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2582,54 +2638,44 @@ enums: text: Other - Volcanic other: text: other - samp_subtype_enum: - name: samp_subtype_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other - rel_to_oxygen_enum: - name: rel_to_oxygen_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - aerobe: - text: aerobe - anaerobe: - text: anaerobe - facultative: - text: facultative - microaerophilic: - text: microaerophilic - microanaerobe: - text: microanaerobe - obligate aerobe: - text: obligate aerobe - obligate anaerobe: - text: obligate anaerobe - samp_collect_point_enum: - name: samp_collect_point_enum + hcr_geol_age_enum: + name: hcr_geol_age_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic other: text: other lithology_enum: @@ -2662,24 +2708,18 @@ enums: text: Volcanic other: text: other - hcr_enum: - name: hcr_enum + samp_subtype_enum: + name: samp_subtype_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable other: text: other oxy_stat_samp_enum: @@ -2692,44 +2732,46 @@ enums: text: anaerobic other: text: other - hcr_geol_age_enum: - name: hcr_geol_age_enum + sr_lithology_enum: + name: sr_lithology_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous + other: + text: other + sr_kerog_type_enum: + name: sr_kerog_type_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + sr_dep_env_enum: + name: sr_dep_env_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine other: text: other sr_geol_age_enum: @@ -2772,48 +2814,38 @@ enums: text: Triassic other: text: other - sr_kerog_type_enum: - name: sr_kerog_type_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV - other: - text: other - sr_lithology_enum: - name: sr_lithology_enum + profile_position_enum: + name: profile_position_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous - other: - text: other - sr_dep_env_enum: - name: sr_dep_env_enum + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope + soil_horizon_enum: + name: soil_horizon_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost fao_class_enum: name: fao_class_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2870,20 +2902,6 @@ enums: text: Vertisols Yermosols: text: Yermosols - profile_position_enum: - name: profile_position_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope biotic_relationship_enum: name: biotic_relationship_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -2896,62 +2914,6 @@ enums: text: commensal symbiont: text: symbiont - soil_horizon_enum: - name: soil_horizon_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - drainage_class_enum: - name: drainage_class_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - very poorly: - text: very poorly - poorly: - text: poorly - somewhat poorly: - text: somewhat poorly - moderately well: - text: moderately well - well: - text: well - excessively drained: - text: excessively drained - tillage_enum: - name: tillage_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough cur_land_use_enum: name: cur_land_use_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -3027,6 +2989,94 @@ enums: text: swamp (permanent or semi-permanent water body dominated by woody plants) crop trees (nuts,fruit,christmas trees,nursery trees): text: crop trees (nuts,fruit,christmas trees,nursery trees) + tillage_enum: + name: tillage_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + drainage_class_enum: + name: drainage_class_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + very poorly: + text: very poorly + poorly: + text: poorly + somewhat poorly: + text: somewhat poorly + moderately well: + text: moderately well + well: + text: well + excessively drained: + text: excessively drained + biol_stat_enum: + name: biol_stat_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + samp_capt_status_enum: + name: samp_capt_status_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample + other: + text: other + samp_dis_stage_enum: + name: samp_dis_stage_enum + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + permissible_values: + dissemination: + text: dissemination + growth and reproduction: + text: growth and reproduction + infection: + text: infection + inoculation: + text: inoculation + penetration: + text: penetration + other: + text: other growth_habit_enum: name: growth_habit_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -3101,56 +3151,18 @@ enums: text: Trioecious Unisexual: text: Unisexual - biol_stat_enum: - name: biol_stat_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - samp_capt_status_enum: - name: samp_capt_status_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample - other: - text: other - samp_dis_stage_enum: - name: samp_dis_stage_enum + tidal_stage_enum: + name: tidal_stage_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc permissible_values: - dissemination: - text: dissemination - growth and reproduction: - text: growth and reproduction - infection: - text: infection - inoculation: - text: inoculation - penetration: - text: penetration - other: - text: other + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide sediment_type_enum: name: sediment_type_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -3163,18 +3175,6 @@ enums: text: hydrogenous lithogenous: text: lithogenous - tidal_stage_enum: - name: tidal_stage_enum - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide host_sex_enum: name: host_sex_enum from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -3237,7 +3237,9 @@ slots: - Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable. examples: - - value: 2021-04-15, 2021-04 and 2021 are all acceptable. + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://example.com/nmdc_submission_schema rank: 2 string_serialization: '{date, arbitrary precision}' @@ -3253,7 +3255,8 @@ slots: comments: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema rank: 1 string_serialization: '{time, seconds optional}' @@ -3270,7 +3273,8 @@ slots: comments: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema rank: 3 string_serialization: '{time, seconds optional}' @@ -4141,7 +4145,9 @@ slots: - Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable. examples: - - value: 2021-04-15, 2021-04 and 2021 are all acceptable. + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://example.com/nmdc_submission_schema rank: 4 string_serialization: '{date, arbitrary precision}' @@ -4157,7 +4163,8 @@ slots: comments: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema rank: 5 string_serialization: '{time, seconds optional}' @@ -15177,71 +15184,31 @@ slots: - zinc is_a: attribute range: QuantityValue - has_raw_value: - name: has_raw_value - description: The value that was specified for an annotation in raw form, i.e. - a string. E.g. "2 cm" or "2-4 cm" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - domain: AttributeValue - multivalued: false - range: string - was_generated_by: - name: was_generated_by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - mappings: - - prov:wasGeneratedBy - range: Activity - investigation field: - name: investigation field - description: field describing aspect of the investigation/study to which the sample - belongs - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - abstract: true - started_at_time: - name: started_at_time - notes: - - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ - It may not be complete, but it is good enough for now.' + has_unit: + name: has_unit + description: Links a QuantityValue to a unit from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + aliases: + - scale mappings: - - prov:startedAtTime - range: datetime - pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ - nucleic acid sequence source field: - name: nucleic acid sequence source field - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - abstract: true - name: - name: name - description: A human readable label for an entity + - qud:unit + - schema:unitCode + range: unit + description: + name: description + description: a human-readable description of a thing from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + slot_uri: dcterms:description range: string - core field: - name: core field - description: basic fields - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - abstract: true - has_maximum_numeric_value: - name: has_maximum_numeric_value - description: The maximum value part, expressed as number, of the quantity value - when the value covers a range. - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - is_a: has_numeric_value - language: - name: language - description: Should use ISO 639-1 code e.g. "en", "fr" - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - range: language code - ended_at_time: - name: ended_at_time - notes: - - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ - It may not be complete, but it is good enough for now.' + longitude: + name: longitude + description: longitude from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc mappings: - - prov:endedAtTime - range: datetime - pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ + - schema:longitude + domain: GeolocationValue + slot_uri: wgs84:long + range: decimal degree term: name: term description: pointer to an ontology class @@ -15251,33 +15218,32 @@ slots: domain: ControlledTermValue range: OntologyClass inlined: true + has_raw_value: + name: has_raw_value + description: The value that was specified for an annotation in raw form, i.e. + a string. E.g. "2 cm" or "2-4 cm" + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + domain: AttributeValue + multivalued: false + range: string + core field: + name: core field + description: basic fields + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + abstract: true alternative_identifiers: name: alternative_identifiers description: A list of alternative identifiers for the entity. from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc multivalued: true range: string - has_numeric_value: - name: has_numeric_value - description: Links a quantity value to a number - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - mappings: - - qud:quantityValue - - schema:value - multivalued: false - range: float - acted_on_behalf_of: - name: acted_on_behalf_of - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - mappings: - - prov:actedOnBehalfOf - range: Agent - has_minimum_numeric_value: - name: has_minimum_numeric_value - description: The minimum value part, expressed as number, of the quantity value - when the value covers a range. + gold_path_field: + name: gold_path_field + description: This is a grouping for any of the gold path fields from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - is_a: has_numeric_value + is_a: attribute + abstract: true + range: string id: name: id description: A unique identifier for a thing. Must be either a CURIE shorthand @@ -15295,12 +15261,28 @@ slots: description: https://github.com/microbiomedata/nmdc-schema/pull/499#discussion_r1018499248 from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc identifier: true + acted_on_behalf_of: + name: acted_on_behalf_of + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + mappings: + - prov:actedOnBehalfOf + range: Agent + nucleic acid sequence source field: + name: nucleic acid sequence source field + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + abstract: true was_associated_with: name: was_associated_with from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc mappings: - prov:wasAssociatedWith range: Agent + has_maximum_numeric_value: + name: has_maximum_numeric_value + description: The maximum value part, expressed as number, of the quantity value + when the value covers a range. + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + is_a: has_numeric_value attribute: name: attribute description: 'A attribute of a biosample. Examples: depth, habitat, material. @@ -15313,38 +15295,17 @@ slots: - key - characteristic abstract: true - was_informed_by: - name: was_informed_by - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - mappings: - - prov:wasInformedBy - range: Activity - longitude: - name: longitude - description: longitude + used: + name: used from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc mappings: - - schema:longitude - domain: GeolocationValue - slot_uri: wgs84:long - range: decimal degree - gold_path_field: - name: gold_path_field - description: This is a grouping for any of the gold path fields + - prov:used + domain: Activity + name: + name: name + description: A human readable label for an entity from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - is_a: attribute - abstract: true range: string - has_unit: - name: has_unit - description: Links a QuantityValue to a unit - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - aliases: - - scale - mappings: - - qud:unit - - schema:unitCode - range: unit latitude: name: latitude description: latitude @@ -15354,23 +15315,69 @@ slots: domain: GeolocationValue slot_uri: wgs84:lat range: decimal degree - used: - name: used + language: + name: language + description: Should use ISO 639-1 code e.g. "en", "fr" + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + range: language code + has_numeric_value: + name: has_numeric_value + description: Links a quantity value to a number from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc mappings: - - prov:used - domain: Activity + - qud:quantityValue + - schema:value + multivalued: false + range: float + ended_at_time: + name: ended_at_time + notes: + - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ + It may not be complete, but it is good enough for now.' + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + mappings: + - prov:endedAtTime + range: datetime + pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ + has_minimum_numeric_value: + name: has_minimum_numeric_value + description: The minimum value part, expressed as number, of the quantity value + when the value covers a range. + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + is_a: has_numeric_value + was_generated_by: + name: was_generated_by + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + mappings: + - prov:wasGeneratedBy + range: Activity environment field: name: environment field description: field describing environmental aspect of a sample from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc abstract: true - description: - name: description - description: a human-readable description of a thing + started_at_time: + name: started_at_time + notes: + - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ + It may not be complete, but it is good enough for now.' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - slot_uri: dcterms:description - range: string + mappings: + - prov:startedAtTime + range: datetime + pattern: ^([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$ + investigation field: + name: investigation field + description: field describing aspect of the investigation/study to which the sample + belongs + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + abstract: true + was_informed_by: + name: was_informed_by + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + mappings: + - prov:wasInformedBy + range: Activity classes: AirInterface: name: AirInterface @@ -45419,20 +45426,6 @@ classes: - Biosample slot_group: sample_id_section range: TextValue - ControlledIdentifiedTermValue: - name: ControlledIdentifiedTermValue - description: A controlled term or class from an ontology, requiring the presence - of term with an id - notes: - - To be used for slots like env_broad_scale - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - is_a: ControlledTermValue - slot_usage: - term: - name: term - domain_of: - - ControlledTermValue - required: true AttributeValue: name: AttributeValue description: The value for any value of a attribute for a sample. This object @@ -45445,20 +45438,49 @@ classes: type: name: type description: An optional string that specified the type of object. - TextValue: - name: TextValue - description: A basic string value + Activity: + name: Activity + description: a provence-generating activity from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - is_a: AttributeValue + mappings: + - prov:Activity slots: - - language - TimestampValue: - name: TimestampValue - description: A value that is a timestamp. The range should be ISO-8601 + - id + - name + - started_at_time + - ended_at_time + - was_informed_by + - was_associated_with + - used + slot_usage: + id: + name: id + domain_of: + - Biosample + - Study + - Activity + - NamedThing + pattern: ^(nmdc):act-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\.[A-Za-z0-9]{1,})*(_[A-Za-z0-9_\.-]+)?$ + structured_pattern: + syntax: '{id_nmdc_prefix}:act-{id_shoulder}-{id_blade}{id_version}{id_locus}' + interpolated: true + todos: + - remove the static pattern once the minter can generate ids that satisfy + this structured_pattern and gen-linkml can expand the structured_pattern + ControlledIdentifiedTermValue: + name: ControlledIdentifiedTermValue + description: A controlled term or class from an ontology, requiring the presence + of term with an id notes: - - 'removed the following slots: year, month, day' + - To be used for slots like env_broad_scale from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - is_a: AttributeValue + is_a: ControlledTermValue + slot_usage: + term: + name: term + domain_of: + - ControlledTermValue + required: true OntologyClass: name: OntologyClass notes: @@ -45476,6 +45498,13 @@ classes: - name - description - alternative_identifiers + TextValue: + name: TextValue + description: A basic string value + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + is_a: AttributeValue + slots: + - language QuantityValue: name: QuantityValue description: A simple quantity, e.g. 2cm @@ -45507,6 +45536,15 @@ classes: - QuantityValue - IntegerValue range: double + Agent: + name: Agent + description: a provence-generating agent + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + mappings: + - prov:Agent + slots: + - acted_on_behalf_of + - was_informed_by ControlledTermValue: name: ControlledTermValue description: A controlled term or class from an ontology @@ -45516,6 +45554,13 @@ classes: is_a: AttributeValue slots: - term + TimestampValue: + name: TimestampValue + description: A value that is a timestamp. The range should be ISO-8601 + notes: + - 'removed the following slots: year, month, day' + from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc + is_a: AttributeValue GeolocationValue: name: GeolocationValue description: A normalized value for a location on the earth's surface @@ -45534,42 +45579,4 @@ classes: description: The raw value for a geolocation should follow {lat} {long} domain_of: - AttributeValue - Agent: - name: Agent - description: a provence-generating agent - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - mappings: - - prov:Agent - slots: - - acted_on_behalf_of - - was_informed_by - Activity: - name: Activity - description: a provence-generating activity - from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc - mappings: - - prov:Activity - slots: - - id - - name - - started_at_time - - ended_at_time - - was_informed_by - - was_associated_with - - used - slot_usage: - id: - name: id - domain_of: - - Biosample - - Study - - Activity - - NamedThing - pattern: ^(nmdc):act-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\.[A-Za-z0-9]{1,})*(_[A-Za-z0-9_\.-]+)?$ - structured_pattern: - syntax: '{id_nmdc_prefix}:act-{id_shoulder}-{id_blade}{id_version}{id_locus}' - interpolated: true - todos: - - remove the static pattern once the minter can generate ids that satisfy - this structured_pattern and gen-linkml can expand the structured_pattern source_file: schema_sheets/yaml_out/from_schema_sheets.yaml diff --git a/src/submission_schema/schema/submission_schema.yaml b/src/submission_schema/schema/submission_schema.yaml index 056bf8c2..fda52b08 100644 --- a/src/submission_schema/schema/submission_schema.yaml +++ b/src/submission_schema/schema/submission_schema.yaml @@ -1293,34 +1293,122 @@ enums: other: text: other description: placeholder PV descr - floor_cond_enum: - name: floor_cond_enum + ceil_type_enum: + name: ceil_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - occup_document_enum: - name: occup_document_enum + cathedral: + text: cathedral + dropped: + text: dropped + concave: + text: concave + barrel-shaped: + text: barrel-shaped + coffered: + text: coffered + cove: + text: cove + stretched: + text: stretched + floor_water_mold_enum: + name: floor_water_mold_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - automated count: - text: automated count - estimate: - text: estimate - manual count: - text: manual count - videos: - text: videos - heat_deliv_loc_enum: - name: heat_deliv_loc_enum + mold odor: + text: mold odor + wet floor: + text: wet floor + water stains: + text: water stains + wall discoloration: + text: wall discoloration + floor discoloration: + text: floor discoloration + ceiling discoloration: + text: ceiling discoloration + peeling paint or wallpaper: + text: peeling paint or wallpaper + bulging walls: + text: bulging walls + condensation: + text: condensation + window_vert_pos_enum: + name: window_vert_pos_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + bottom: + text: bottom + middle: + text: middle + top: + text: top + low: + text: low + high: + text: high + specific_enum: + name: specific_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + operation: + text: operation + as built: + text: as built + construction: + text: construction + bid: + text: bid + design: + text: design + photos: + text: photos + ceil_finish_mat_enum: + name: ceil_finish_mat_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + drywall: + text: drywall + mineral fibre: + text: mineral fibre + tiles: + text: tiles + PVC: + text: PVC + plasterboard: + text: plasterboard + metal: + text: metal + fiberglass: + text: fiberglass + stucco: + text: stucco + mineral wool/calcium silicate: + text: mineral wool/calcium silicate + wood: + text: wood + indoor_surf_enum: + name: indoor_surf_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + cabinet: + text: cabinet + ceiling: + text: ceiling + counter top: + text: counter top + door: + text: door + shelving: + text: shelving + vent cover: + text: vent cover + window: + text: window + wall: + text: wall + wall_loc_enum: + name: wall_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: north: @@ -1331,22 +1419,96 @@ enums: text: east west: text: west - gender_restroom_enum: - name: gender_restroom_enum + window_type_enum: + name: window_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - all gender: - text: all gender - female: - text: female - gender neurtral: - text: gender neurtral - male: - text: male - male and female: - text: male and female - unisex: - text: unisex + single-hung sash window: + text: single-hung sash window + horizontal sash window: + text: horizontal sash window + fixed window: + text: fixed window + samp_floor_enum: + name: samp_floor_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + 1st floor: + text: 1st floor + 2nd floor: + text: 2nd floor + basement: + text: basement + lobby: + text: lobby + filter_type_enum: + name: filter_type_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + particulate air filter: + text: particulate air filter + chemical air filter: + text: chemical air filter + low-MERV pleated media: + text: low-MERV pleated media + HEPA: + text: HEPA + electrostatic: + text: electrostatic + gas-phase or ultraviolet air treatments: + text: gas-phase or ultraviolet air treatments + window_cover_enum: + name: window_cover_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + blinds: + text: blinds + curtains: + text: curtains + none: + text: none + room_condt_enum: + name: room_condt_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + visible signs of mold/mildew: + text: visible signs of mold/mildew + room_connected_enum: + name: room_connected_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + office: + text: office + stairwell: + text: stairwell build_docs_enum: name: build_docs_enum from_schema: https://example.com/nmdc_submission_schema @@ -1377,74 +1539,58 @@ enums: text: ventilation system windows: text: windows - door_type_wood_enum: - name: door_type_wood_enum + indoor_space_enum: + name: indoor_space_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - bettened and ledged: - text: bettened and ledged - battened: - text: battened - ledged and braced: - text: ledged and braced - ledged and framed: - text: ledged and framed - ledged, braced and frame: - text: ledged, braced and frame - framed and paneled: - text: framed and paneled - glashed or sash: - text: glashed or sash - flush: - text: flush - louvered: - text: louvered - wire gauged: - text: wire gauged - surf_material_enum: - name: surf_material_enum + bedroom: + text: bedroom + office: + text: office + bathroom: + text: bathroom + foyer: + text: foyer + kitchen: + text: kitchen + locker room: + text: locker room + hallway: + text: hallway + elevator: + text: elevator + window_loc_enum: + name: window_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - adobe: - text: adobe - carpet: - text: carpet - cinder blocks: - text: cinder blocks - concrete: - text: concrete - hay bales: - text: hay bales - glass: - text: glass - metal: - text: metal - paint: - text: paint - plastic: - text: plastic - stainless steel: - text: stainless steel - stone: - text: stone - stucco: - text: stucco - tile: - text: tile - vinyl: - text: vinyl - wood: - text: wood - furniture_enum: - name: furniture_enum + north: + text: north + south: + text: south + east: + text: east + west: + text: west + ext_wall_orient_enum: + name: ext_wall_orient_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - cabinet: - text: cabinet - chair: - text: chair - desks: - text: desks + north: + text: north + south: + text: south + east: + text: east + west: + text: west + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest drawings_enum: name: drawings_enum from_schema: https://example.com/nmdc_submission_schema @@ -1487,170 +1633,174 @@ enums: text: sunny windy: text: windy - weekday_enum: - name: weekday_enum + rel_samp_loc_enum: + name: rel_samp_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Monday: - text: Monday - Tuesday: - text: Tuesday - Wednesday: - text: Wednesday - Thursday: - text: Thursday - Friday: - text: Friday - Saturday: - text: Saturday - Sunday: - text: Sunday - window_mat_enum: - name: window_mat_enum + edge of car: + text: edge of car + center of car: + text: center of car + under a seat: + text: under a seat + door_mat_enum: + name: door_mat_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - clad: - text: clad + aluminum: + text: aluminum + cellular PVC: + text: cellular PVC + engineered plastic: + text: engineered plastic + fiberboard: + text: fiberboard fiberglass: text: fiberglass metal: text: metal + thermoplastic alloy: + text: thermoplastic alloy vinyl: text: vinyl wood: text: wood - samp_floor_enum: - name: samp_floor_enum + wood/plastic composite: + text: wood/plastic composite + room_type_enum: + name: room_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - 1st floor: - text: 1st floor - 2nd floor: - text: 2nd floor - basement: - text: basement + attic: + text: attic + bathroom: + text: bathroom + closet: + text: closet + conference room: + text: conference room + elevator: + text: elevator + examining room: + text: examining room + hallway: + text: hallway + kitchen: + text: kitchen + mail room: + text: mail room + private office: + text: private office + open office: + text: open office + stairwell: + text: stairwell + ',restroom': + text: ',restroom' lobby: text: lobby - door_type_metal_enum: - name: door_type_metal_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - collapsible: - text: collapsible - corrugated steel: - text: corrugated steel - hollow: - text: hollow - rolling shutters: - text: rolling shutters - steel plate: - text: steel plate - ceil_finish_mat_enum: - name: ceil_finish_mat_enum + vestibule: + text: vestibule + mechanical or electrical room: + text: mechanical or electrical room + data center: + text: data center + laboratory_wet: + text: laboratory_wet + laboratory_dry: + text: laboratory_dry + gymnasium: + text: gymnasium + natatorium: + text: natatorium + auditorium: + text: auditorium + lockers: + text: lockers + cafe: + text: cafe + warehouse: + text: warehouse + wall_finish_mat_enum: + name: wall_finish_mat_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - drywall: - text: drywall - mineral fibre: - text: mineral fibre - tiles: - text: tiles - PVC: - text: PVC - plasterboard: - text: plasterboard - metal: - text: metal - fiberglass: - text: fiberglass - stucco: - text: stucco - mineral wool/calcium silicate: - text: mineral wool/calcium silicate + plaster: + text: plaster + gypsum plaster: + text: gypsum plaster + veneer plaster: + text: veneer plaster + gypsum board: + text: gypsum board + tile: + text: tile + terrazzo: + text: terrazzo + stone facing: + text: stone facing + acoustical treatment: + text: acoustical treatment wood: text: wood - vis_media_enum: - name: vis_media_enum + metal: + text: metal + masonry: + text: masonry + quad_pos_enum: + name: quad_pos_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - photos: - text: photos - videos: - text: videos - commonly of the building: - text: commonly of the building - site context (adjacent buildings, vegetation, terrain, streets): - text: site context (adjacent buildings, vegetation, terrain, streets) - interiors: - text: interiors - equipment: - text: equipment - 3D scans: - text: 3D scans - room_loc_enum: - name: room_loc_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - corner room: - text: corner room - interior room: - text: interior room - exterior wall: - text: exterior wall - wall_const_type_enum: - name: wall_const_type_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - frame construction: - text: frame construction - joisted masonry: - text: joisted masonry - light noncombustible: - text: light noncombustible - masonry noncombustible: - text: masonry noncombustible - modified fire resistive: - text: modified fire resistive - fire resistive: - text: fire resistive - surf_air_cont_enum: - name: surf_air_cont_enum + North side: + text: North side + West side: + text: West side + South side: + text: South side + East side: + text: East side + build_occup_type_enum: + name: build_occup_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - dust: - text: dust - organic matter: - text: organic matter - particulate matter: - text: particulate matter - volatile organic compounds: - text: volatile organic compounds - biological contaminants: - text: biological contaminants - radon: - text: radon - nutrients: - text: nutrients - biocides: - text: biocides - room_condt_enum: - name: room_condt_enum + office: + text: office + market: + text: market + restaurant: + text: restaurant + residence: + text: residence + school: + text: school + residential: + text: residential + commercial: + text: commercial + low rise: + text: low rise + high rise: + text: high rise + wood framed: + text: wood framed + health care: + text: health care + airport: + text: airport + sports complex: + text: sports complex + door_direct_enum: + name: door_direct_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - new: - text: new - visible wear: - text: visible wear - needs repair: - text: needs repair - damaged: - text: damaged - rupture: - text: rupture - visible signs of mold/mildew: - text: visible signs of mold/mildew - door_loc_enum: - name: door_loc_enum + inward: + text: inward + outward: + text: outward + sideways: + text: sideways + ext_window_orient_enum: + name: ext_window_orient_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: north: @@ -1661,32 +1811,56 @@ enums: text: east west: text: west - specific_enum: - name: specific_enum + northeast: + text: northeast + southeast: + text: southeast + southwest: + text: southwest + northwest: + text: northwest + vis_media_enum: + name: vis_media_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - operation: - text: operation - as built: - text: as built - construction: - text: construction - bid: - text: bid - design: - text: design photos: text: photos - substructure_type_enum: - name: substructure_type_enum + videos: + text: videos + commonly of the building: + text: commonly of the building + site context (adjacent buildings, vegetation, terrain, streets): + text: site context (adjacent buildings, vegetation, terrain, streets) + interiors: + text: interiors + equipment: + text: equipment + 3D scans: + text: 3D scans + arch_struc_enum: + name: arch_struc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - crawlspace: - text: crawlspace - slab on grade: - text: slab on grade - basement: - text: basement + building: + text: building + shed: + text: shed + home: + text: home + water_feat_type_enum: + name: water_feat_type_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + fountain: + text: fountain + pool: + text: pool + standing feature: + text: standing feature + stream: + text: stream + waterfall: + text: waterfall int_wall_cond_enum: name: int_wall_cond_enum from_schema: https://example.com/nmdc_submission_schema @@ -1701,44 +1875,80 @@ enums: text: damaged rupture: text: rupture - shading_device_type_enum: - name: shading_device_type_enum + door_type_enum: + name: door_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - bahama shutters: - text: bahama shutters - exterior roll blind: - text: exterior roll blind - gambrel awning: - text: gambrel awning - hood awning: - text: hood awning - porchroller awning: - text: porchroller awning - sarasota shutters: - text: sarasota shutters - slatted aluminum: - text: slatted aluminum - solid aluminum awning: - text: solid aluminum awning - sun screen: - text: sun screen - tree: - text: tree - trellis: - text: trellis - venetian awning: - text: venetian awning - window_type_enum: - name: window_type_enum + composite: + text: composite + metal: + text: metal + wooden: + text: wooden + floor_struc_enum: + name: floor_struc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - single-hung sash window: - text: single-hung sash window - horizontal sash window: - text: horizontal sash window - fixed window: - text: fixed window + balcony: + text: balcony + floating floor: + text: floating floor + glass floor: + text: glass floor + raised floor: + text: raised floor + sprung floor: + text: sprung floor + wood-framed: + text: wood-framed + concrete: + text: concrete + window_cond_enum: + name: window_cond_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + wall_texture_enum: + name: wall_texture_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + '': + text: '' + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl door_cond_enum: name: door_cond_enum from_schema: https://example.com/nmdc_submission_schema @@ -1753,76 +1963,86 @@ enums: text: rupture visible wear: text: visible wear - door_mat_enum: - name: door_mat_enum + floor_cond_enum: + name: floor_cond_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - aluminum: - text: aluminum - cellular PVC: - text: cellular PVC - engineered plastic: - text: engineered plastic - fiberboard: - text: fiberboard - fiberglass: - text: fiberglass - metal: - text: metal - thermoplastic alloy: - text: thermoplastic alloy - vinyl: - text: vinyl - wood: - text: wood - wood/plastic composite: - text: wood/plastic composite - light_type_enum: - name: light_type_enum + new: + text: new + visible wear: + text: visible wear + needs repair: + text: needs repair + damaged: + text: damaged + rupture: + text: rupture + occup_document_enum: + name: occup_document_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - natural light: - text: natural light - electric light: - text: electric light - desk lamp: - text: desk lamp - flourescent lights: - text: flourescent lights - none: - text: none - quad_pos_enum: - name: quad_pos_enum + automated count: + text: automated count + estimate: + text: estimate + manual count: + text: manual count + videos: + text: videos + ceil_texture_enum: + name: ceil_texture_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - North side: - text: North side - West side: - text: West side - South side: - text: South side - East side: - text: East side - indoor_space_enum: - name: indoor_space_enum + crows feet: + text: crows feet + crows-foot stomp: + text: crows-foot stomp + double skip: + text: double skip + hawk and trowel: + text: hawk and trowel + knockdown: + text: knockdown + popcorn: + text: popcorn + orange peel: + text: orange peel + rosebud stomp: + text: rosebud stomp + Santa-Fe texture: + text: Santa-Fe texture + skip trowel: + text: skip trowel + smooth: + text: smooth + stomp knockdown: + text: stomp knockdown + swirl: + text: swirl + train_stat_loc_enum: + name: train_stat_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - bedroom: - text: bedroom - office: - text: office - bathroom: - text: bathroom - foyer: - text: foyer - kitchen: - text: kitchen - locker room: - text: locker room - hallway: - text: hallway - elevator: - text: elevator + south station above ground: + text: south station above ground + south station underground: + text: south station underground + south station amtrak: + text: south station amtrak + forest hills: + text: forest hills + riverside: + text: riverside + train_stop_loc_enum: + name: train_stop_loc_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + end: + text: end + mid: + text: mid + downtown: + text: downtown season_use_enum: name: season_use_enum from_schema: https://example.com/nmdc_submission_schema @@ -1835,40 +2055,76 @@ enums: text: Fall Winter: text: Winter - floor_struc_enum: - name: floor_struc_enum + substructure_type_enum: + name: substructure_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - balcony: - text: balcony - floating floor: - text: floating floor - glass floor: - text: glass floor - raised floor: - text: raised floor - sprung floor: - text: sprung floor - wood-framed: - text: wood-framed + crawlspace: + text: crawlspace + slab on grade: + text: slab on grade + basement: + text: basement + surf_material_enum: + name: surf_material_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + adobe: + text: adobe + carpet: + text: carpet + cinder blocks: + text: cinder blocks concrete: text: concrete - train_stat_loc_enum: - name: train_stat_loc_enum + hay bales: + text: hay bales + glass: + text: glass + metal: + text: metal + paint: + text: paint + plastic: + text: plastic + stainless steel: + text: stainless steel + stone: + text: stone + stucco: + text: stucco + tile: + text: tile + vinyl: + text: vinyl + wood: + text: wood + light_type_enum: + name: light_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - south station above ground: - text: south station above ground - south station underground: - text: south station underground - south station amtrak: - text: south station amtrak - forest hills: - text: forest hills - riverside: - text: riverside - ext_window_orient_enum: - name: ext_window_orient_enum + natural light: + text: natural light + electric light: + text: electric light + desk lamp: + text: desk lamp + flourescent lights: + text: flourescent lights + none: + text: none + window_horiz_pos_enum: + name: window_horiz_pos_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + left: + text: left + middle: + text: middle + right: + text: right + door_loc_enum: + name: door_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: north: @@ -1879,184 +2135,222 @@ enums: text: east west: text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest - build_occup_type_enum: - name: build_occup_type_enum + surf_air_cont_enum: + name: surf_air_cont_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - office: - text: office - market: - text: market - restaurant: - text: restaurant - residence: - text: residence - school: - text: school - residential: - text: residential - commercial: - text: commercial - low rise: - text: low rise - high rise: - text: high rise - wood framed: - text: wood framed - health care: - text: health care - airport: - text: airport - sports complex: - text: sports complex - rel_samp_loc_enum: - name: rel_samp_loc_enum + dust: + text: dust + organic matter: + text: organic matter + particulate matter: + text: particulate matter + volatile organic compounds: + text: volatile organic compounds + biological contaminants: + text: biological contaminants + radon: + text: radon + nutrients: + text: nutrients + biocides: + text: biocides + wall_surf_treatment_enum: + name: wall_surf_treatment_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - edge of car: - text: edge of car - center of car: - text: center of car - under a seat: - text: under a seat - window_vert_pos_enum: - name: window_vert_pos_enum + painted: + text: painted + wall paper: + text: wall paper + no treatment: + text: no treatment + paneling: + text: paneling + stucco: + text: stucco + fabric: + text: fabric + door_type_wood_enum: + name: door_type_wood_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - bottom: - text: bottom - middle: - text: middle - top: - text: top - low: - text: low - high: - text: high - wall_loc_enum: - name: wall_loc_enum + bettened and ledged: + text: bettened and ledged + battened: + text: battened + ledged and braced: + text: ledged and braced + ledged and framed: + text: ledged and framed + ledged, braced and frame: + text: ledged, braced and frame + framed and paneled: + text: framed and paneled + glashed or sash: + text: glashed or sash + flush: + text: flush + louvered: + text: louvered + wire gauged: + text: wire gauged + heat_cool_type_enum: + name: heat_cool_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west - indoor_surf_enum: - name: indoor_surf_enum + radiant system: + text: radiant system + heat pump: + text: heat pump + forced air system: + text: forced air system + steam forced heat: + text: steam forced heat + wood stove: + text: wood stove + train_line_enum: + name: train_line_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - cabinet: - text: cabinet - ceiling: - text: ceiling - counter top: - text: counter top - door: - text: door - shelving: - text: shelving - vent cover: - text: vent cover - window: - text: window - wall: - text: wall - train_stop_loc_enum: - name: train_stop_loc_enum + red: + text: red + green: + text: green + orange: + text: orange + shading_device_type_enum: + name: shading_device_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - end: - text: end - mid: - text: mid - downtown: - text: downtown - water_feat_type_enum: - name: water_feat_type_enum + bahama shutters: + text: bahama shutters + exterior roll blind: + text: exterior roll blind + gambrel awning: + text: gambrel awning + hood awning: + text: hood awning + porchroller awning: + text: porchroller awning + sarasota shutters: + text: sarasota shutters + slatted aluminum: + text: slatted aluminum + solid aluminum awning: + text: solid aluminum awning + sun screen: + text: sun screen + tree: + text: tree + trellis: + text: trellis + venetian awning: + text: venetian awning + door_move_enum: + name: door_move_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - fountain: - text: fountain - pool: - text: pool - standing feature: - text: standing feature - stream: - text: stream - waterfall: - text: waterfall - wall_texture_enum: - name: wall_texture_enum + collapsible: + text: collapsible + folding: + text: folding + revolving: + text: revolving + rolling shutter: + text: rolling shutter + sliding: + text: sliding + swinging: + text: swinging + wall_const_type_enum: + name: wall_const_type_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - '': - text: '' - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl - wall_surf_treatment_enum: - name: wall_surf_treatment_enum + frame construction: + text: frame construction + joisted masonry: + text: joisted masonry + light noncombustible: + text: light noncombustible + masonry noncombustible: + text: masonry noncombustible + modified fire resistive: + text: modified fire resistive + fire resistive: + text: fire resistive + room_samp_pos_enum: + name: room_samp_pos_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + north corner: + text: north corner + south corner: + text: south corner + west corner: + text: west corner + east corner: + text: east corner + northeast corner: + text: northeast corner + northwest corner: + text: northwest corner + southeast corner: + text: southeast corner + southwest corner: + text: southwest corner + center: + text: center + weekday_enum: + name: weekday_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - painted: - text: painted - wall paper: - text: wall paper - no treatment: - text: no treatment - paneling: - text: paneling - stucco: - text: stucco - fabric: - text: fabric - arch_struc_enum: - name: arch_struc_enum + Monday: + text: Monday + Tuesday: + text: Tuesday + Wednesday: + text: Wednesday + Thursday: + text: Thursday + Friday: + text: Friday + Saturday: + text: Saturday + Sunday: + text: Sunday + gender_restroom_enum: + name: gender_restroom_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - building: - text: building - shed: - text: shed - home: - text: home - ext_wall_orient_enum: - name: ext_wall_orient_enum + all gender: + text: all gender + female: + text: female + gender neurtral: + text: gender neurtral + male: + text: male + male and female: + text: male and female + unisex: + text: unisex + shading_device_cond_enum: + name: shading_device_cond_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + damaged: + text: damaged + needs repair: + text: needs repair + new: + text: new + rupture: + text: rupture + visible wear: + text: visible wear + heat_deliv_loc_enum: + name: heat_deliv_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: north: @@ -2067,14 +2361,20 @@ enums: text: east west: text: west - northeast: - text: northeast - southeast: - text: southeast - southwest: - text: southwest - northwest: - text: northwest + window_mat_enum: + name: window_mat_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + clad: + text: clad + fiberglass: + text: fiberglass + metal: + text: metal + vinyl: + text: vinyl + wood: + text: wood mech_struc_enum: name: mech_struc_enum from_schema: https://example.com/nmdc_submission_schema @@ -2097,92 +2397,38 @@ enums: text: car bus: text: bus - door_move_enum: - name: door_move_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - collapsible: - text: collapsible - folding: - text: folding - revolving: - text: revolving - rolling shutter: - text: rolling shutter - sliding: - text: sliding - swinging: - text: swinging - wall_finish_mat_enum: - name: wall_finish_mat_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - plaster: - text: plaster - gypsum plaster: - text: gypsum plaster - veneer plaster: - text: veneer plaster - gypsum board: - text: gypsum board - tile: - text: tile - terrazzo: - text: terrazzo - stone facing: - text: stone facing - acoustical treatment: - text: acoustical treatment - wood: - text: wood - metal: - text: metal - masonry: - text: masonry - door_direct_enum: - name: door_direct_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - inward: - text: inward - outward: - text: outward - sideways: - text: sideways - window_cover_enum: - name: window_cover_enum + room_loc_enum: + name: room_loc_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - blinds: - text: blinds - curtains: - text: curtains - none: - text: none - heat_cool_type_enum: - name: heat_cool_type_enum + corner room: + text: corner room + interior room: + text: interior room + exterior wall: + text: exterior wall + furniture_enum: + name: furniture_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - radiant system: - text: radiant system - heat pump: - text: heat pump - forced air system: - text: forced air system - steam forced heat: - text: steam forced heat - wood stove: - text: wood stove - door_type_enum: - name: door_type_enum + cabinet: + text: cabinet + chair: + text: chair + desks: + text: desks + handidness_enum: + name: handidness_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - composite: - text: composite - metal: - text: metal - wooden: - text: wooden + ambidexterity: + text: ambidexterity + left handedness: + text: left handedness + mixed-handedness: + text: mixed-handedness + right handedness: + text: right handedness floor_finish_mat_enum: name: floor_finish_mat_enum from_schema: https://example.com/nmdc_submission_schema @@ -2223,176 +2469,6 @@ enums: text: paint none or unfinished: text: none or unfinished - train_line_enum: - name: train_line_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - red: - text: red - green: - text: green - orange: - text: orange - room_type_enum: - name: room_type_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - private office: - text: private office - open office: - text: open office - stairwell: - text: stairwell - ',restroom': - text: ',restroom' - lobby: - text: lobby - vestibule: - text: vestibule - mechanical or electrical room: - text: mechanical or electrical room - data center: - text: data center - laboratory_wet: - text: laboratory_wet - laboratory_dry: - text: laboratory_dry - gymnasium: - text: gymnasium - natatorium: - text: natatorium - auditorium: - text: auditorium - lockers: - text: lockers - cafe: - text: cafe - warehouse: - text: warehouse - ceil_type_enum: - name: ceil_type_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - cathedral: - text: cathedral - dropped: - text: dropped - concave: - text: concave - barrel-shaped: - text: barrel-shaped - coffered: - text: coffered - cove: - text: cove - stretched: - text: stretched - building_setting_enum: - name: building_setting_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - urban: - text: urban - suburban: - text: suburban - exurban: - text: exurban - rural: - text: rural - room_connected_enum: - name: room_connected_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - attic: - text: attic - bathroom: - text: bathroom - closet: - text: closet - conference room: - text: conference room - elevator: - text: elevator - examining room: - text: examining room - hallway: - text: hallway - kitchen: - text: kitchen - mail room: - text: mail room - office: - text: office - stairwell: - text: stairwell - room_samp_pos_enum: - name: room_samp_pos_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - north corner: - text: north corner - south corner: - text: south corner - west corner: - text: west corner - east corner: - text: east corner - northeast corner: - text: northeast corner - northwest corner: - text: northwest corner - southeast corner: - text: southeast corner - southwest corner: - text: southwest corner - center: - text: center - shading_device_cond_enum: - name: shading_device_cond_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear - window_cond_enum: - name: window_cond_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - damaged: - text: damaged - needs repair: - text: needs repair - new: - text: new - rupture: - text: rupture - visible wear: - text: visible wear door_comp_type_enum: name: door_comp_type_enum from_schema: https://example.com/nmdc_submission_schema @@ -2405,62 +2481,20 @@ enums: text: sliding telescopic: text: telescopic - handidness_enum: - name: handidness_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - ambidexterity: - text: ambidexterity - left handedness: - text: left handedness - mixed-handedness: - text: mixed-handedness - right handedness: - text: right handedness - window_horiz_pos_enum: - name: window_horiz_pos_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - left: - text: left - middle: - text: middle - right: - text: right - floor_water_mold_enum: - name: floor_water_mold_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - mold odor: - text: mold odor - wet floor: - text: wet floor - water stains: - text: water stains - wall discoloration: - text: wall discoloration - floor discoloration: - text: floor discoloration - ceiling discoloration: - text: ceiling discoloration - peeling paint or wallpaper: - text: peeling paint or wallpaper - bulging walls: - text: bulging walls - condensation: - text: condensation - window_loc_enum: - name: window_loc_enum + door_type_metal_enum: + name: door_type_metal_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - north: - text: north - south: - text: south - east: - text: east - west: - text: west + collapsible: + text: collapsible + corrugated steel: + text: corrugated steel + hollow: + text: hollow + rolling shutters: + text: rolling shutters + steel plate: + text: steel plate ceil_cond_enum: name: ceil_cond_enum from_schema: https://example.com/nmdc_submission_schema @@ -2475,52 +2509,74 @@ enums: text: damaged rupture: text: rupture - filter_type_enum: - name: filter_type_enum + building_setting_enum: + name: building_setting_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - particulate air filter: - text: particulate air filter - chemical air filter: - text: chemical air filter - low-MERV pleated media: - text: low-MERV pleated media - HEPA: - text: HEPA - electrostatic: - text: electrostatic - gas-phase or ultraviolet air treatments: - text: gas-phase or ultraviolet air treatments - ceil_texture_enum: - name: ceil_texture_enum + urban: + text: urban + suburban: + text: suburban + exurban: + text: exurban + rural: + text: rural + samp_collect_point_enum: + name: samp_collect_point_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - crows feet: - text: crows feet - crows-foot stomp: - text: crows-foot stomp - double skip: - text: double skip - hawk and trowel: - text: hawk and trowel - knockdown: - text: knockdown - popcorn: - text: popcorn - orange peel: - text: orange peel - rosebud stomp: - text: rosebud stomp - Santa-Fe texture: - text: Santa-Fe texture - skip trowel: - text: skip trowel - smooth: - text: smooth - stomp knockdown: - text: stomp knockdown - swirl: - text: swirl + well: + text: well + test well: + text: test well + drilling rig: + text: drilling rig + wellhead: + text: wellhead + separator: + text: separator + storage tank: + text: storage tank + other: + text: other + hcr_enum: + name: hcr_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + Oil Reservoir: + text: Oil Reservoir + Gas Reservoir: + text: Gas Reservoir + Oil Sand: + text: Oil Sand + Coalbed: + text: Coalbed + Shale: + text: Shale + Tight Oil Reservoir: + text: Tight Oil Reservoir + Tight Gas Reservoir: + text: Tight Gas Reservoir + other: + text: other + rel_to_oxygen_enum: + name: rel_to_oxygen_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + aerobe: + text: aerobe + anaerobe: + text: anaerobe + facultative: + text: facultative + microaerophilic: + text: microaerophilic + microanaerobe: + text: microanaerobe + obligate aerobe: + text: obligate aerobe + obligate anaerobe: + text: obligate anaerobe hc_produced_enum: name: hc_produced_enum from_schema: https://example.com/nmdc_submission_schema @@ -2573,54 +2629,44 @@ enums: text: Other - Volcanic other: text: other - samp_subtype_enum: - name: samp_subtype_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - oil phase: - text: oil phase - water phase: - text: water phase - biofilm: - text: biofilm - not applicable: - text: not applicable - other: - text: other - rel_to_oxygen_enum: - name: rel_to_oxygen_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - aerobe: - text: aerobe - anaerobe: - text: anaerobe - facultative: - text: facultative - microaerophilic: - text: microaerophilic - microanaerobe: - text: microanaerobe - obligate aerobe: - text: obligate aerobe - obligate anaerobe: - text: obligate anaerobe - samp_collect_point_enum: - name: samp_collect_point_enum + hcr_geol_age_enum: + name: hcr_geol_age_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - well: - text: well - test well: - text: test well - drilling rig: - text: drilling rig - wellhead: - text: wellhead - separator: - text: separator - storage tank: - text: storage tank + Archean: + text: Archean + Cambrian: + text: Cambrian + Carboniferous: + text: Carboniferous + Cenozoic: + text: Cenozoic + Cretaceous: + text: Cretaceous + Devonian: + text: Devonian + Jurassic: + text: Jurassic + Mesozoic: + text: Mesozoic + Neogene: + text: Neogene + Ordovician: + text: Ordovician + Paleogene: + text: Paleogene + Paleozoic: + text: Paleozoic + Permian: + text: Permian + Precambrian: + text: Precambrian + Proterozoic: + text: Proterozoic + Silurian: + text: Silurian + Triassic: + text: Triassic other: text: other lithology_enum: @@ -2653,24 +2699,18 @@ enums: text: Volcanic other: text: other - hcr_enum: - name: hcr_enum + samp_subtype_enum: + name: samp_subtype_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Oil Reservoir: - text: Oil Reservoir - Gas Reservoir: - text: Gas Reservoir - Oil Sand: - text: Oil Sand - Coalbed: - text: Coalbed - Shale: - text: Shale - Tight Oil Reservoir: - text: Tight Oil Reservoir - Tight Gas Reservoir: - text: Tight Gas Reservoir + oil phase: + text: oil phase + water phase: + text: water phase + biofilm: + text: biofilm + not applicable: + text: not applicable other: text: other oxy_stat_samp_enum: @@ -2683,44 +2723,46 @@ enums: text: anaerobic other: text: other - hcr_geol_age_enum: - name: hcr_geol_age_enum + sr_lithology_enum: + name: sr_lithology_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Archean: - text: Archean - Cambrian: - text: Cambrian - Carboniferous: - text: Carboniferous - Cenozoic: - text: Cenozoic - Cretaceous: - text: Cretaceous - Devonian: - text: Devonian - Jurassic: - text: Jurassic - Mesozoic: - text: Mesozoic - Neogene: - text: Neogene - Ordovician: - text: Ordovician - Paleogene: - text: Paleogene - Paleozoic: - text: Paleozoic - Permian: - text: Permian - Precambrian: - text: Precambrian - Proterozoic: - text: Proterozoic - Silurian: - text: Silurian - Triassic: - text: Triassic + Clastic: + text: Clastic + Carbonate: + text: Carbonate + Coal: + text: Coal + Biosilicieous: + text: Biosilicieous + other: + text: other + sr_kerog_type_enum: + name: sr_kerog_type_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + Type I: + text: Type I + Type II: + text: Type II + Type III: + text: Type III + Type IV: + text: Type IV + other: + text: other + sr_dep_env_enum: + name: sr_dep_env_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + Lacustine: + text: Lacustine + Fluvioldeltaic: + text: Fluvioldeltaic + Fluviomarine: + text: Fluviomarine + Marine: + text: Marine other: text: other sr_geol_age_enum: @@ -2763,48 +2805,38 @@ enums: text: Triassic other: text: other - sr_kerog_type_enum: - name: sr_kerog_type_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - Type I: - text: Type I - Type II: - text: Type II - Type III: - text: Type III - Type IV: - text: Type IV - other: - text: other - sr_lithology_enum: - name: sr_lithology_enum + profile_position_enum: + name: profile_position_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Clastic: - text: Clastic - Carbonate: - text: Carbonate - Coal: - text: Coal - Biosilicieous: - text: Biosilicieous - other: - text: other - sr_dep_env_enum: - name: sr_dep_env_enum + summit: + text: summit + shoulder: + text: shoulder + backslope: + text: backslope + footslope: + text: footslope + toeslope: + text: toeslope + soil_horizon_enum: + name: soil_horizon_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - Lacustine: - text: Lacustine - Fluvioldeltaic: - text: Fluvioldeltaic - Fluviomarine: - text: Fluviomarine - Marine: - text: Marine - other: - text: other + O horizon: + text: O horizon + A horizon: + text: A horizon + E horizon: + text: E horizon + B horizon: + text: B horizon + C horizon: + text: C horizon + R layer: + text: R layer + Permafrost: + text: Permafrost fao_class_enum: name: fao_class_enum from_schema: https://example.com/nmdc_submission_schema @@ -2861,20 +2893,6 @@ enums: text: Vertisols Yermosols: text: Yermosols - profile_position_enum: - name: profile_position_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - summit: - text: summit - shoulder: - text: shoulder - backslope: - text: backslope - footslope: - text: footslope - toeslope: - text: toeslope biotic_relationship_enum: name: biotic_relationship_enum from_schema: https://example.com/nmdc_submission_schema @@ -2887,62 +2905,6 @@ enums: text: commensal symbiont: text: symbiont - soil_horizon_enum: - name: soil_horizon_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - O horizon: - text: O horizon - A horizon: - text: A horizon - E horizon: - text: E horizon - B horizon: - text: B horizon - C horizon: - text: C horizon - R layer: - text: R layer - Permafrost: - text: Permafrost - drainage_class_enum: - name: drainage_class_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - very poorly: - text: very poorly - poorly: - text: poorly - somewhat poorly: - text: somewhat poorly - moderately well: - text: moderately well - well: - text: well - excessively drained: - text: excessively drained - tillage_enum: - name: tillage_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - drill: - text: drill - cutting disc: - text: cutting disc - ridge till: - text: ridge till - strip tillage: - text: strip tillage - zonal tillage: - text: zonal tillage - chisel: - text: chisel - tined: - text: tined - mouldboard: - text: mouldboard - disc plough: - text: disc plough cur_land_use_enum: name: cur_land_use_enum from_schema: https://example.com/nmdc_submission_schema @@ -3017,6 +2979,94 @@ enums: text: swamp (permanent or semi-permanent water body dominated by woody plants) crop trees (nuts,fruit,christmas trees,nursery trees): text: crop trees (nuts,fruit,christmas trees,nursery trees) + tillage_enum: + name: tillage_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + drill: + text: drill + cutting disc: + text: cutting disc + ridge till: + text: ridge till + strip tillage: + text: strip tillage + zonal tillage: + text: zonal tillage + chisel: + text: chisel + tined: + text: tined + mouldboard: + text: mouldboard + disc plough: + text: disc plough + drainage_class_enum: + name: drainage_class_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + very poorly: + text: very poorly + poorly: + text: poorly + somewhat poorly: + text: somewhat poorly + moderately well: + text: moderately well + well: + text: well + excessively drained: + text: excessively drained + biol_stat_enum: + name: biol_stat_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + wild: + text: wild + natural: + text: natural + semi-natural: + text: semi-natural + inbred line: + text: inbred line + breeder's line: + text: breeder's line + hybrid: + text: hybrid + clonal selection: + text: clonal selection + mutant: + text: mutant + samp_capt_status_enum: + name: samp_capt_status_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + active surveillance in response to an outbreak: + text: active surveillance in response to an outbreak + active surveillance not initiated by an outbreak: + text: active surveillance not initiated by an outbreak + farm sample: + text: farm sample + market sample: + text: market sample + other: + text: other + samp_dis_stage_enum: + name: samp_dis_stage_enum + from_schema: https://example.com/nmdc_submission_schema + permissible_values: + dissemination: + text: dissemination + growth and reproduction: + text: growth and reproduction + infection: + text: infection + inoculation: + text: inoculation + penetration: + text: penetration + other: + text: other growth_habit_enum: name: growth_habit_enum from_schema: https://example.com/nmdc_submission_schema @@ -3091,56 +3141,18 @@ enums: text: Trioecious Unisexual: text: Unisexual - biol_stat_enum: - name: biol_stat_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - wild: - text: wild - natural: - text: natural - semi-natural: - text: semi-natural - inbred line: - text: inbred line - breeder's line: - text: breeder's line - hybrid: - text: hybrid - clonal selection: - text: clonal selection - mutant: - text: mutant - samp_capt_status_enum: - name: samp_capt_status_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - active surveillance in response to an outbreak: - text: active surveillance in response to an outbreak - active surveillance not initiated by an outbreak: - text: active surveillance not initiated by an outbreak - farm sample: - text: farm sample - market sample: - text: market sample - other: - text: other - samp_dis_stage_enum: - name: samp_dis_stage_enum + tidal_stage_enum: + name: tidal_stage_enum from_schema: https://example.com/nmdc_submission_schema permissible_values: - dissemination: - text: dissemination - growth and reproduction: - text: growth and reproduction - infection: - text: infection - inoculation: - text: inoculation - penetration: - text: penetration - other: - text: other + low tide: + text: low tide + ebb tide: + text: ebb tide + flood tide: + text: flood tide + high tide: + text: high tide sediment_type_enum: name: sediment_type_enum from_schema: https://example.com/nmdc_submission_schema @@ -3153,18 +3165,6 @@ enums: text: hydrogenous lithogenous: text: lithogenous - tidal_stage_enum: - name: tidal_stage_enum - from_schema: https://example.com/nmdc_submission_schema - permissible_values: - low tide: - text: low tide - ebb tide: - text: ebb tide - flood tide: - text: flood tide - high tide: - text: high tide host_sex_enum: name: host_sex_enum from_schema: https://example.com/nmdc_submission_schema @@ -3223,7 +3223,9 @@ slots: comments: - Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable. examples: - - value: 2021-04-15, 2021-04 and 2021 are all acceptable. + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://example.com/nmdc_submission_schema rank: 2 string_serialization: '{date, arbitrary precision}' @@ -3238,7 +3240,8 @@ slots: comments: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema rank: 1 string_serialization: '{time, seconds optional}' @@ -3253,7 +3256,8 @@ slots: comments: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema rank: 3 string_serialization: '{time, seconds optional}' @@ -4070,7 +4074,9 @@ slots: comments: - Date should be formatted as YYYY(-MM(-DD)). Ie, 2021-04-15, 2021-04 and 2021 are all acceptable. examples: - - value: 2021-04-15, 2021-04 and 2021 are all acceptable. + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://example.com/nmdc_submission_schema rank: 4 string_serialization: '{date, arbitrary precision}' @@ -4085,7 +4091,8 @@ slots: comments: - 'Time should be entered as HH:MM(:SS) in GMT. See here for a converter: https://www.worldtimebuddy.com/pst-to-gmt-converter' examples: - - value: 13:33 or 13:33:55 + - value: '13:33' + - value: '13:33:55' from_schema: https://example.com/nmdc_submission_schema rank: 5 string_serialization: '{time, seconds optional}' @@ -14627,64 +14634,31 @@ slots: - zinc is_a: attribute range: string - has_raw_value: - name: has_raw_value - description: The value that was specified for an annotation in raw form, i.e. a string. E.g. "2 cm" or "2-4 cm" - from_schema: https://example.com/nmdc_submission_schema - domain: AttributeValue - multivalued: false - range: string - was_generated_by: - name: was_generated_by - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:wasGeneratedBy - range: Activity - investigation field: - name: investigation field - description: field describing aspect of the investigation/study to which the sample belongs - from_schema: https://example.com/nmdc_submission_schema - abstract: true - started_at_time: - name: started_at_time - notes: - - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ It may not be complete, but it is good enough for now.' + has_unit: + name: has_unit + description: Links a QuantityValue to a unit from_schema: https://example.com/nmdc_submission_schema + aliases: + - scale mappings: - - prov:startedAtTime - range: datetime - nucleic acid sequence source field: - name: nucleic acid sequence source field - from_schema: https://example.com/nmdc_submission_schema - abstract: true - name: - name: name - description: A human readable label for an entity + - qud:unit + - schema:unitCode + range: unit + description: + name: description + description: a human-readable description of a thing from_schema: https://example.com/nmdc_submission_schema + slot_uri: dcterms:description range: string - core field: - name: core field - description: basic fields - from_schema: https://example.com/nmdc_submission_schema - abstract: true - has_maximum_numeric_value: - name: has_maximum_numeric_value - description: The maximum value part, expressed as number, of the quantity value when the value covers a range. - from_schema: https://example.com/nmdc_submission_schema - is_a: has_numeric_value - language: - name: language - description: Should use ISO 639-1 code e.g. "en", "fr" - from_schema: https://example.com/nmdc_submission_schema - range: language code - ended_at_time: - name: ended_at_time - notes: - - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ It may not be complete, but it is good enough for now.' + longitude: + name: longitude + description: longitude from_schema: https://example.com/nmdc_submission_schema mappings: - - prov:endedAtTime - range: datetime + - schema:longitude + domain: NamedThing + slot_uri: wgs84:long + range: decimal degree term: name: term description: pointer to an ontology class @@ -14694,32 +14668,31 @@ slots: domain: NamedThing range: OntologyClass inlined: true + has_raw_value: + name: has_raw_value + description: The value that was specified for an annotation in raw form, i.e. a string. E.g. "2 cm" or "2-4 cm" + from_schema: https://example.com/nmdc_submission_schema + domain: AttributeValue + multivalued: false + range: string + core field: + name: core field + description: basic fields + from_schema: https://example.com/nmdc_submission_schema + abstract: true alternative_identifiers: name: alternative_identifiers description: A list of alternative identifiers for the entity. from_schema: https://example.com/nmdc_submission_schema multivalued: true range: string - has_numeric_value: - name: has_numeric_value - description: Links a quantity value to a number - from_schema: https://example.com/nmdc_submission_schema - mappings: - - qud:quantityValue - - schema:value - multivalued: false - range: float - acted_on_behalf_of: - name: acted_on_behalf_of - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:actedOnBehalfOf - range: Agent - has_minimum_numeric_value: - name: has_minimum_numeric_value - description: The minimum value part, expressed as number, of the quantity value when the value covers a range. + gold_path_field: + name: gold_path_field + description: This is a grouping for any of the gold path fields from_schema: https://example.com/nmdc_submission_schema - is_a: has_numeric_value + is_a: attribute + abstract: true + range: string id: name: id description: A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI @@ -14733,12 +14706,27 @@ slots: description: https://github.com/microbiomedata/nmdc-schema/pull/499#discussion_r1018499248 from_schema: https://example.com/nmdc_submission_schema identifier: true + acted_on_behalf_of: + name: acted_on_behalf_of + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:actedOnBehalfOf + range: Agent + nucleic acid sequence source field: + name: nucleic acid sequence source field + from_schema: https://example.com/nmdc_submission_schema + abstract: true was_associated_with: name: was_associated_with from_schema: https://example.com/nmdc_submission_schema mappings: - prov:wasAssociatedWith range: Agent + has_maximum_numeric_value: + name: has_maximum_numeric_value + description: The maximum value part, expressed as number, of the quantity value when the value covers a range. + from_schema: https://example.com/nmdc_submission_schema + is_a: has_numeric_value attribute: name: attribute description: 'A attribute of a biosample. Examples: depth, habitat, material. For NMDC, attributes SHOULD be mapped to terms within a MIxS template' @@ -14750,38 +14738,17 @@ slots: - key - characteristic abstract: true - was_informed_by: - name: was_informed_by - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:wasInformedBy - range: Activity - longitude: - name: longitude - description: longitude + used: + name: used from_schema: https://example.com/nmdc_submission_schema mappings: - - schema:longitude - domain: NamedThing - slot_uri: wgs84:long - range: decimal degree - gold_path_field: - name: gold_path_field - description: This is a grouping for any of the gold path fields + - prov:used + domain: Activity + name: + name: name + description: A human readable label for an entity from_schema: https://example.com/nmdc_submission_schema - is_a: attribute - abstract: true range: string - has_unit: - name: has_unit - description: Links a QuantityValue to a unit - from_schema: https://example.com/nmdc_submission_schema - aliases: - - scale - mappings: - - qud:unit - - schema:unitCode - range: unit latitude: name: latitude description: latitude @@ -14791,23 +14758,63 @@ slots: domain: NamedThing slot_uri: wgs84:lat range: decimal degree - used: - name: used + language: + name: language + description: Should use ISO 639-1 code e.g. "en", "fr" + from_schema: https://example.com/nmdc_submission_schema + range: language code + has_numeric_value: + name: has_numeric_value + description: Links a quantity value to a number from_schema: https://example.com/nmdc_submission_schema mappings: - - prov:used - domain: Activity + - qud:quantityValue + - schema:value + multivalued: false + range: float + ended_at_time: + name: ended_at_time + notes: + - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ It may not be complete, but it is good enough for now.' + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:endedAtTime + range: datetime + has_minimum_numeric_value: + name: has_minimum_numeric_value + description: The minimum value part, expressed as number, of the quantity value when the value covers a range. + from_schema: https://example.com/nmdc_submission_schema + is_a: has_numeric_value + was_generated_by: + name: was_generated_by + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:wasGeneratedBy + range: Activity environment field: name: environment field description: field describing environmental aspect of a sample from_schema: https://example.com/nmdc_submission_schema abstract: true - description: - name: description - description: a human-readable description of a thing + started_at_time: + name: started_at_time + notes: + - 'The regex for ISO-8601 format was taken from here: https://www.myintervals.com/blog/2009/05/20/iso-8601-date-validation-that-doesnt-suck/ It may not be complete, but it is good enough for now.' from_schema: https://example.com/nmdc_submission_schema - slot_uri: dcterms:description - range: string + mappings: + - prov:startedAtTime + range: datetime + investigation field: + name: investigation field + description: field describing aspect of the investigation/study to which the sample belongs + from_schema: https://example.com/nmdc_submission_schema + abstract: true + was_informed_by: + name: was_informed_by + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:wasInformedBy + range: Activity classes: AirInterface: name: AirInterface @@ -15041,7 +15048,9 @@ classes: - MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -15069,7 +15078,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -15158,7 +15168,6 @@ classes: title: elevation, meters comments: - All elevations must be reported in meters. Provide the numerical portion only. - - All elevations must be reported in meters. Provide the numerical portion only. examples: - value: '225' - value: '0' @@ -15198,6 +15207,12 @@ classes: title: local environmental context notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -15216,6 +15231,8 @@ classes: title: environmental medium notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -15637,7 +15654,8 @@ classes: description: A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -15665,7 +15683,8 @@ classes: comments: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -16479,7 +16498,9 @@ classes: - MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -16507,7 +16528,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -16793,7 +16815,6 @@ classes: title: elevation, meters comments: - All elevations must be reported in meters. Provide the numerical portion only. - - All elevations must be reported in meters. Provide the numerical portion only. examples: - value: '225' - value: '0' @@ -16833,6 +16854,12 @@ classes: title: local environmental context notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -16851,6 +16878,8 @@ classes: title: environmental medium notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -17479,7 +17508,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -17774,7 +17802,8 @@ classes: description: A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -17802,7 +17831,8 @@ classes: comments: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -19128,7 +19158,9 @@ classes: - MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -19206,7 +19238,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -19627,7 +19660,6 @@ classes: title: elevation, meters comments: - All elevations must be reported in meters. Provide the numerical portion only. - - All elevations must be reported in meters. Provide the numerical portion only. examples: - value: '225' - value: '0' @@ -19692,6 +19724,12 @@ classes: title: local environmental context notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -19710,6 +19748,8 @@ classes: title: environmental medium notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -23406,7 +23446,9 @@ classes: - MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -23487,7 +23529,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -23744,7 +23787,6 @@ classes: title: elevation, meters comments: - All elevations must be reported in meters. Provide the numerical portion only. - - All elevations must be reported in meters. Provide the numerical portion only. examples: - value: '225' - value: '0' @@ -23784,6 +23826,12 @@ classes: title: local environmental context notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -23802,6 +23850,8 @@ classes: title: environmental medium notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -24421,7 +24471,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -24714,7 +24763,8 @@ classes: description: A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -24770,7 +24820,8 @@ classes: comments: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -26316,7 +26367,9 @@ classes: - MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -26397,7 +26450,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -26654,7 +26708,6 @@ classes: title: elevation, meters comments: - All elevations must be reported in meters. Provide the numerical portion only. - - All elevations must be reported in meters. Provide the numerical portion only. examples: - value: '225' - value: '0' @@ -26694,6 +26747,12 @@ classes: title: local environmental context notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -26712,6 +26771,8 @@ classes: title: environmental medium notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -27327,7 +27388,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -27698,7 +27758,8 @@ classes: description: A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -27755,7 +27816,8 @@ classes: comments: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -28855,7 +28917,9 @@ classes: - MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -28883,7 +28947,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -28972,7 +29037,6 @@ classes: title: elevation, meters comments: - All elevations must be reported in meters. Provide the numerical portion only. - - All elevations must be reported in meters. Provide the numerical portion only. examples: - value: '225' - value: '0' @@ -29012,6 +29076,12 @@ classes: title: local environmental context notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -29030,6 +29100,8 @@ classes: title: environmental medium notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -30101,7 +30173,8 @@ classes: description: A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -30129,7 +30202,8 @@ classes: comments: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -30679,7 +30753,9 @@ classes: - MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -30735,7 +30811,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -30993,7 +31070,6 @@ classes: title: elevation, meters comments: - All elevations must be reported in meters. Provide the numerical portion only. - - All elevations must be reported in meters. Provide the numerical portion only. examples: - value: '225' - value: '0' @@ -31033,6 +31109,12 @@ classes: title: local environmental context notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -31051,6 +31133,8 @@ classes: title: environmental medium notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -31454,7 +31538,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -31692,7 +31775,8 @@ classes: description: A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -31720,7 +31804,8 @@ classes: comments: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -32371,7 +32456,9 @@ classes: - MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -32425,7 +32512,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -32514,7 +32602,6 @@ classes: title: elevation, meters comments: - All elevations must be reported in meters. Provide the numerical portion only. - - All elevations must be reported in meters. Provide the numerical portion only. examples: - value: '225' - value: '0' @@ -32554,6 +32641,12 @@ classes: title: local environmental context notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -32572,6 +32665,8 @@ classes: title: environmental medium notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -34139,7 +34234,8 @@ classes: description: A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -34167,7 +34263,8 @@ classes: comments: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -34978,7 +35075,9 @@ classes: - MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -35034,7 +35133,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -35320,7 +35420,6 @@ classes: title: elevation, meters comments: - All elevations must be reported in meters. Provide the numerical portion only. - - All elevations must be reported in meters. Provide the numerical portion only. examples: - value: '225' - value: '0' @@ -35360,6 +35459,12 @@ classes: title: local environmental context notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -35378,6 +35483,8 @@ classes: title: environmental medium notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -36035,7 +36142,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -36359,7 +36465,8 @@ classes: description: A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -36387,7 +36494,8 @@ classes: comments: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -37038,7 +37146,6 @@ classes: - I think it's weird the way GSC writes the title. I recommend this change. Thoughts? I would argue this isn't an extreme unusual property. It's just a biogeochemical measurement. comments: - Aluminum saturation is the percentage of the CEC occupies by aluminum. Like all cations, aluminum held by the cation exchange complex is in equilibrium with aluminum in the soil solution. - - Aluminum saturation is the percentage of the CEC occupies by aluminum. Like all cations, aluminum held by the cation exchange complex is in equilibrium with aluminum in the soil solution. examples: - value: '0.27' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -37062,7 +37169,6 @@ classes: - I think it's weird the way GSC writes the title. I recommend this change. Thoughts? comments: - Required when aluminum saturation is provided. - - Required when aluminum saturation is provided. examples: - value: https://doi.org/10.1371/journal.pone.0176357 from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -37309,7 +37415,9 @@ classes: - MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -37387,8 +37495,6 @@ classes: comments: - Values provided here can be specific species of vegetation or vegetation regions - See for vegetation regions- https://education.nationalgeographic.org/resource/vegetation-region - - Values provided here can be specific species of vegetation or vegetation regions - - See for vegetation regions- https://education.nationalgeographic.org/resource/vegetation-region examples: - value: deciduous forest - value: forest @@ -37415,7 +37521,6 @@ classes: - I'm not sure this is a DOI, PMID, or URI. Should pool the community and find out how they accomplish this if provided. comments: - Required when current vegetation is provided. - - Required when current vegetation is provided. examples: - value: https://doi.org/10.1111/j.1654-109X.2011.01154.x from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -37442,7 +37547,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -37556,7 +37662,6 @@ classes: title: elevation, meters comments: - All elevations must be reported in meters. Provide the numerical portion only. - - All elevations must be reported in meters. Provide the numerical portion only. examples: - value: '225' - value: '0' @@ -37596,6 +37701,12 @@ classes: title: local environmental context notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -37614,6 +37725,8 @@ classes: title: environmental medium notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -37712,7 +37825,6 @@ classes: - This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot comments: - Provide the date the fire occurred. If extended burning occurred provide the date range. - - Provide the date the fire occurred. If extended burning occurred provide the date range. examples: - value: '1871-10-10' - value: 1871-10-01 to 1871-10-31 @@ -37743,7 +37855,6 @@ classes: - This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot comments: - Provide the date the flood occurred. If extended flooding occurred provide the date range. - - Provide the date the flood occurred. If extended flooding occurred provide the date range. examples: - value: '1927-04-15' - value: 1927-04 to 1927-05 @@ -37849,7 +37960,6 @@ classes: - Changed to multi-valued. In MIxS, you add another column to denote multiple heavy metals. We don't have that ability in the submission portal. comments: - For multiple heavy metals and concentrations, separate by ; - - For multiple heavy metals and concentrations, separate by ; examples: - value: mercury 0.09 micrograms per gram - value: mercury 0.09 ug/g; chromium 0.03 ug/g @@ -37874,8 +37984,6 @@ classes: comments: - Required when heavy metals are provided - If different methods are used for multiple metals, indicate the metal and method. Separate metals by ; - - Required when heavy metals are provided - - If different methods are used for multiple metals, indicate the metal and method. Separate metals by ; examples: - value: https://doi.org/10.3390/ijms9040434 - value: mercury https://doi.org/10.1007/BF01056090; chromium https://doi.org/10.1007/s00216-006-0322-8 @@ -38413,7 +38521,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -38660,7 +38767,8 @@ classes: description: A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -38688,7 +38796,8 @@ classes: comments: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -38745,7 +38854,6 @@ classes: - mean and average are the same thing, but it seems like bad practice to not be consistent. Changed mean to average comments: - Seasons are defined as spring (March, April, May), summer (June, July, August), autumn (September, October, November) and winter (December, January, February). - - Seasons are defined as spring (March, April, May), summer (June, July, August), autumn (September, October, November) and winter (December, January, February). examples: - value: 0.4 inch - value: 10.16 mm @@ -38797,8 +38905,6 @@ classes: comments: - Describe how samples were composited or sieved. - Use 'sample link' to indicate which samples were combined. - - Describe how samples were composited or sieved. - - Use 'sample link' to indicate which samples were combined. examples: - value: combined 2 cores - value: 4mm sieved @@ -38885,7 +38991,6 @@ classes: - This is no longer matching the listed IRI from GSC. When NMDC has its own slots, map this to the MIxS slot comments: - Aspect is the orientation of slope, measured clockwise in degrees from 0 to 360, where 0 is north-facing, 90 is east-facing, 180 is south-facing, and 270 is west-facing. - - Aspect is the orientation of slope, measured clockwise in degrees from 0 to 360, where 0 is north-facing, 90 is east-facing, 180 is south-facing, and 270 is west-facing. examples: - value: '35' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc @@ -39273,7 +39378,6 @@ classes: - Should this be multi valued? How to we manage and validate this? comments: - Required if providing water content - - Required if providing water content examples: - value: J. Nat. Prod. Plant Resour., 2012, 2 (4):500-503 - value: https://dec.alaska.gov/applications/spar/webcalc/definitions.htm @@ -39612,7 +39716,9 @@ classes: - MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -39640,7 +39746,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -39757,7 +39864,6 @@ classes: title: elevation, meters comments: - All elevations must be reported in meters. Provide the numerical portion only. - - All elevations must be reported in meters. Provide the numerical portion only. examples: - value: '225' - value: '0' @@ -39826,6 +39932,12 @@ classes: title: local environmental context notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -39844,6 +39956,8 @@ classes: title: environmental medium notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -40222,7 +40336,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -40453,7 +40566,8 @@ classes: description: A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -40481,7 +40595,8 @@ classes: comments: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -41560,7 +41675,9 @@ classes: - MIxS collection_date accepts (truncated) ISO8601. DH taking arb prec date only - Use modified term (amended definition) examples: - - value: 2021-04-15; 2021-04; 2021 + - value: '2021-04-15' + - value: 2021-04 + - value: '2021' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - collection date @@ -41644,7 +41761,8 @@ classes: comments: - All depths must be reported in meters. Provide the numerical portion only. examples: - - value: 0-0.1; 1 + - value: 0-0.1 + - value: '1' from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - depth @@ -42014,7 +42132,6 @@ classes: title: elevation, meters comments: - All elevations must be reported in meters. Provide the numerical portion only. - - All elevations must be reported in meters. Provide the numerical portion only. examples: - value: '225' - value: '0' @@ -42054,6 +42171,12 @@ classes: title: local environmental context notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: canopy [ENVO:00000047] + - value: herb and fern layer [ENVO:01000337] + - value: litter layer [ENVO:01000338] + - value: understory [01000335] + - value: shrub layer [ENVO:01000336] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 7 is_a: environment field @@ -42072,6 +42195,8 @@ classes: title: environmental medium notes: - range changed to enumeration late in makefile, so this is modified (but "sample ID" anyway) + examples: + - value: soil [ENVO:00001998] from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc rank: 8 is_a: environment field @@ -42728,7 +42853,6 @@ classes: title: pH method comments: - This can include a link to the instrument used or a citation for the method. - - This can include a link to the instrument used or a citation for the method. examples: - value: https://www.southernlabware.com/pc9500-benchtop-ph-conductivity-meter-kit-ph-accuracy-2000mv-ph-range-2-000-to-20-000.html?gclid=Cj0KCQiAwJWdBhCYARIsAJc4idCO5vtvbVMf545fcvdROFqa6zjzNSoywNx6K4k9Coo9cCc2pybtvGsaAiR0EALw_wcB - value: https://doi.org/10.2136/sssabookser5.3.c16 @@ -43079,7 +43203,8 @@ classes: description: A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed. title: sample material processing examples: - - value: filtering of seawater, storing samples in ethanol + - value: filtering of seawater + - value: storing samples in ethanol from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - sample material processing @@ -43107,7 +43232,8 @@ classes: comments: - This refers to the TOTAL amount of sample collected from the experiment. NOT the amount sent to each institution or collected for a specific analysis. examples: - - value: 5 grams; 10 mL + - value: 5 grams + - value: 10 mL from_schema: https://raw.githubusercontent.com/microbiomedata/nmdc-schema/main/src/schema/nmdc aliases: - amount or size of sample collected @@ -43766,6 +43892,33 @@ classes: type: name: type description: An optional string that specified the type of object. + Activity: + name: Activity + description: a provence-generating activity + from_schema: https://example.com/nmdc_submission_schema + mappings: + - prov:Activity + slots: + - id + - name + - started_at_time + - ended_at_time + - was_informed_by + - was_associated_with + - used + slot_usage: + id: + name: id + domain_of: + - Biosample + - Study + - Activity + - NamedThing + structured_pattern: + syntax: '{id_nmdc_prefix}:act-{id_shoulder}-{id_blade}{id_version}{id_locus}' + interpolated: true + todos: + - remove the static pattern once the minter can generate ids that satisfy this structured_pattern and gen-linkml can expand the structured_pattern OntologyClass: name: OntologyClass notes: @@ -43794,31 +43947,4 @@ classes: - acted_on_behalf_of - was_informed_by slot_usage: [] - Activity: - name: Activity - description: a provence-generating activity - from_schema: https://example.com/nmdc_submission_schema - mappings: - - prov:Activity - slots: - - id - - name - - started_at_time - - ended_at_time - - was_informed_by - - was_associated_with - - used - slot_usage: - id: - name: id - domain_of: - - Biosample - - Study - - Activity - - NamedThing - structured_pattern: - syntax: '{id_nmdc_prefix}:act-{id_shoulder}-{id_blade}{id_version}{id_locus}' - interpolated: true - todos: - - remove the static pattern once the minter can generate ids that satisfy this structured_pattern and gen-linkml can expand the structured_pattern source_file: sheets_and_friends/yaml_out/with_modifications.yaml.raw