From 88ba0ce60c222a1236daf27faa635b38777dbfea Mon Sep 17 00:00:00 2001 From: "Mark A. Miller" Date: Fri, 8 Nov 2024 16:45:52 -0500 Subject: [PATCH] undocumentated water and sediemnt notebooks --- ...st_google_sheets_sediment_env_medium.ipynb | 84 +++++++++--------- ...post_google_sheets_sediment_env_medium.tsv | 38 ++++++++ .../water/env_broad_scale/.gitkeep | 0 ..._google_sheets_water_env_broad_scale.ipynb | 52 +++++------ ...st_google_sheets_water_env_broad_scale.tsv | 57 ++++++++++++ .../water/env_medium/.gitkeep | 0 .../post_google_sheets_water_env_medium.ipynb | 88 +++++++++---------- .../post_google_sheets_water_env_medium.tsv | 50 +++++++++++ 8 files changed, 257 insertions(+), 112 deletions(-) create mode 100644 notebooks/environmental_context_value_sets/sediment/env_medium/post_google_sheets_sediment_env_medium.tsv delete mode 100644 notebooks/environmental_context_value_sets/water/env_broad_scale/.gitkeep create mode 100644 notebooks/environmental_context_value_sets/water/env_broad_scale/post_google_sheets_water_env_broad_scale.tsv delete mode 100644 notebooks/environmental_context_value_sets/water/env_medium/.gitkeep rename notebooks/environmental_context_value_sets/water/{env_broad_scale => env_medium}/post_google_sheets_water_env_medium.ipynb (80%) create mode 100644 notebooks/environmental_context_value_sets/water/env_medium/post_google_sheets_water_env_medium.tsv diff --git a/notebooks/environmental_context_value_sets/sediment/env_medium/post_google_sheets_sediment_env_medium.ipynb b/notebooks/environmental_context_value_sets/sediment/env_medium/post_google_sheets_sediment_env_medium.ipynb index b4539a52..44346262 100644 --- a/notebooks/environmental_context_value_sets/sediment/env_medium/post_google_sheets_sediment_env_medium.ipynb +++ b/notebooks/environmental_context_value_sets/sediment/env_medium/post_google_sheets_sediment_env_medium.ipynb @@ -6,8 +6,8 @@ "metadata": { "collapsed": true, "ExecuteTime": { - "end_time": "2024-11-06T18:01:34.968569Z", - "start_time": "2024-11-06T18:01:32.194183Z" + "end_time": "2024-11-08T21:45:07.530150Z", + "start_time": "2024-11-08T21:45:03.871217Z" } }, "source": [ @@ -23,8 +23,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:34.976699Z", - "start_time": "2024-11-06T18:01:34.973538Z" + "end_time": "2024-11-08T21:45:07.541825Z", + "start_time": "2024-11-08T21:45:07.538423Z" } }, "cell_type": "code", @@ -36,8 +36,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.039500Z", - "start_time": "2024-11-06T18:01:35.036491Z" + "end_time": "2024-11-08T21:45:07.617499Z", + "start_time": "2024-11-08T21:45:07.614240Z" } }, "cell_type": "code", @@ -49,8 +49,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.083290Z", - "start_time": "2024-11-06T18:01:35.079759Z" + "end_time": "2024-11-08T21:45:07.661276Z", + "start_time": "2024-11-08T21:45:07.658130Z" } }, "cell_type": "code", @@ -62,8 +62,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.130926Z", - "start_time": "2024-11-06T18:01:35.127664Z" + "end_time": "2024-11-08T21:45:07.708369Z", + "start_time": "2024-11-08T21:45:07.704644Z" } }, "cell_type": "code", @@ -83,8 +83,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.177640Z", - "start_time": "2024-11-06T18:01:35.174628Z" + "end_time": "2024-11-08T21:45:07.756451Z", + "start_time": "2024-11-08T21:45:07.752869Z" } }, "cell_type": "code", @@ -96,8 +96,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.225409Z", - "start_time": "2024-11-06T18:01:35.222555Z" + "end_time": "2024-11-08T21:45:07.806138Z", + "start_time": "2024-11-08T21:45:07.801640Z" } }, "cell_type": "code", @@ -109,8 +109,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.273071Z", - "start_time": "2024-11-06T18:01:35.270032Z" + "end_time": "2024-11-08T21:45:07.855049Z", + "start_time": "2024-11-08T21:45:07.852147Z" } }, "cell_type": "code", @@ -126,8 +126,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.321332Z", - "start_time": "2024-11-06T18:01:35.318509Z" + "end_time": "2024-11-08T21:45:07.903245Z", + "start_time": "2024-11-08T21:45:07.899797Z" } }, "cell_type": "code", @@ -144,8 +144,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.369114Z", - "start_time": "2024-11-06T18:01:35.365911Z" + "end_time": "2024-11-08T21:45:07.951995Z", + "start_time": "2024-11-08T21:45:07.947638Z" } }, "cell_type": "code", @@ -161,8 +161,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.418020Z", - "start_time": "2024-11-06T18:01:35.415071Z" + "end_time": "2024-11-08T21:45:08.000900Z", + "start_time": "2024-11-08T21:45:07.997168Z" } }, "cell_type": "code", @@ -174,8 +174,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.464867Z", - "start_time": "2024-11-06T18:01:35.461865Z" + "end_time": "2024-11-08T21:45:08.049424Z", + "start_time": "2024-11-08T21:45:08.046056Z" } }, "cell_type": "code", @@ -187,8 +187,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.511596Z", - "start_time": "2024-11-06T18:01:35.508599Z" + "end_time": "2024-11-08T21:45:08.096888Z", + "start_time": "2024-11-08T21:45:08.093910Z" } }, "cell_type": "code", @@ -205,8 +205,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.558753Z", - "start_time": "2024-11-06T18:01:35.555750Z" + "end_time": "2024-11-08T21:45:08.147008Z", + "start_time": "2024-11-08T21:45:08.142926Z" } }, "cell_type": "code", @@ -218,8 +218,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.605646Z", - "start_time": "2024-11-06T18:01:35.602728Z" + "end_time": "2024-11-08T21:45:08.194252Z", + "start_time": "2024-11-08T21:45:08.191328Z" } }, "cell_type": "code", @@ -231,8 +231,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.694267Z", - "start_time": "2024-11-06T18:01:35.649637Z" + "end_time": "2024-11-08T21:45:08.272405Z", + "start_time": "2024-11-08T21:45:08.238914Z" } }, "cell_type": "code", @@ -244,8 +244,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.706020Z", - "start_time": "2024-11-06T18:01:35.703201Z" + "end_time": "2024-11-08T21:45:08.291444Z", + "start_time": "2024-11-08T21:45:08.288373Z" } }, "cell_type": "code", @@ -257,8 +257,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.829583Z", - "start_time": "2024-11-06T18:01:35.745102Z" + "end_time": "2024-11-08T21:45:08.409089Z", + "start_time": "2024-11-08T21:45:08.336135Z" } }, "cell_type": "code", @@ -292,8 +292,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.942557Z", - "start_time": "2024-11-06T18:01:35.838912Z" + "end_time": "2024-11-08T21:45:08.574170Z", + "start_time": "2024-11-08T21:45:08.426022Z" } }, "cell_type": "code", @@ -323,8 +323,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.984030Z", - "start_time": "2024-11-06T18:01:35.953594Z" + "end_time": "2024-11-08T21:45:08.610818Z", + "start_time": "2024-11-08T21:45:08.584151Z" } }, "cell_type": "code", @@ -349,8 +349,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:36.000799Z", - "start_time": "2024-11-06T18:01:35.998681Z" + "end_time": "2024-11-08T21:45:08.628495Z", + "start_time": "2024-11-08T21:45:08.626149Z" } }, "cell_type": "code", diff --git a/notebooks/environmental_context_value_sets/sediment/env_medium/post_google_sheets_sediment_env_medium.tsv b/notebooks/environmental_context_value_sets/sediment/env_medium/post_google_sheets_sediment_env_medium.tsv new file mode 100644 index 00000000..6dcd4751 --- /dev/null +++ b/notebooks/environmental_context_value_sets/sediment/env_medium/post_google_sheets_sediment_env_medium.tsv @@ -0,0 +1,38 @@ +id label +ENVO:00002179 intertidal sediment +ENVO:01000112 polymetallic nodule +ENVO:01000121 colloidal sediment +ENVO:00002113 deep marine sediment +ENVO:01001036 sediment permeated by saline water +ENVO:01000113 suspended sediment +ENVO:02000045 red clay +ENVO:01001028 sediment permeated by freshwater +ENVO:01000082 biogenous sediment +ENVO:01000153 sulphate-reducing sediment +ENVO:01000110 hydrogenous sediment +ENVO:01000119 silty sediment +ENVO:01001821 hydrothermally-influenced sediment +ENVO:01000154 carbon dioxide-reducing sediment +ENVO:02000046 calcareous ooze +ENVO:03000033 marine sediment +ENVO:02000152 mangrove biome sediment +ENVO:01000116 pebble sediment +ENVO:02000044 siliceous ooze +ENVO:03000034 shallow marine sediment +ENVO:01000132 thermophilic sediment +ENVO:01000120 clay sediment +ENVO:00002045 anaerobic sediment +ENVO:01000070 terrigenous sediment +ENVO:01000152 iron-reducing sediment +ENVO:01001203 alluvial sediment +ENVO:01000115 cobble sediment +ENVO:01000111 cosmogenous sediment +ENVO:01000135 nitrate-reducing sediment +ENVO:01000117 granular sediment +ENVO:01000118 sandy sediment +ENVO:00002007 sediment +ENVO:02000153 marine salt marsh sediment +ENVO:01000151 manganese-reducing sediment +ENVO:01000114 boulder sediment +ENVO:01000133 hyperthermophilic sediment +ENVO:01000131 mesophilic sediment diff --git a/notebooks/environmental_context_value_sets/water/env_broad_scale/.gitkeep b/notebooks/environmental_context_value_sets/water/env_broad_scale/.gitkeep deleted file mode 100644 index e69de29b..00000000 diff --git a/notebooks/environmental_context_value_sets/water/env_broad_scale/post_google_sheets_water_env_broad_scale.ipynb b/notebooks/environmental_context_value_sets/water/env_broad_scale/post_google_sheets_water_env_broad_scale.ipynb index 2cf0ed9d..4926c96c 100644 --- a/notebooks/environmental_context_value_sets/water/env_broad_scale/post_google_sheets_water_env_broad_scale.ipynb +++ b/notebooks/environmental_context_value_sets/water/env_broad_scale/post_google_sheets_water_env_broad_scale.ipynb @@ -6,8 +6,8 @@ "metadata": { "collapsed": true, "ExecuteTime": { - "end_time": "2024-11-06T17:35:37.855742Z", - "start_time": "2024-11-06T17:35:31.907283Z" + "end_time": "2024-11-08T21:41:55.760989Z", + "start_time": "2024-11-08T21:41:52.315130Z" } }, "source": [ @@ -21,8 +21,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T17:35:37.871010Z", - "start_time": "2024-11-06T17:35:37.864620Z" + "end_time": "2024-11-08T21:41:55.771187Z", + "start_time": "2024-11-08T21:41:55.767587Z" } }, "cell_type": "code", @@ -34,8 +34,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T17:35:37.993293Z", - "start_time": "2024-11-06T17:35:37.988628Z" + "end_time": "2024-11-08T21:41:55.847596Z", + "start_time": "2024-11-08T21:41:55.844228Z" } }, "cell_type": "code", @@ -47,8 +47,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T17:35:38.037271Z", - "start_time": "2024-11-06T17:35:38.031869Z" + "end_time": "2024-11-08T21:41:55.893032Z", + "start_time": "2024-11-08T21:41:55.889139Z" } }, "cell_type": "code", @@ -60,8 +60,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T17:35:38.088833Z", - "start_time": "2024-11-06T17:35:38.084379Z" + "end_time": "2024-11-08T21:41:55.940339Z", + "start_time": "2024-11-08T21:41:55.937023Z" } }, "cell_type": "code", @@ -73,8 +73,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T17:35:38.185407Z", - "start_time": "2024-11-06T17:35:38.134304Z" + "end_time": "2024-11-08T21:41:56.022047Z", + "start_time": "2024-11-08T21:41:55.987530Z" } }, "cell_type": "code", @@ -86,8 +86,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T17:35:38.205303Z", - "start_time": "2024-11-06T17:35:38.200271Z" + "end_time": "2024-11-08T21:41:56.038710Z", + "start_time": "2024-11-08T21:41:56.035382Z" } }, "cell_type": "code", @@ -99,8 +99,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T17:35:38.387919Z", - "start_time": "2024-11-06T17:35:38.244087Z" + "end_time": "2024-11-08T21:41:56.160486Z", + "start_time": "2024-11-08T21:41:56.084200Z" } }, "cell_type": "code", @@ -130,8 +130,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T17:35:38.415171Z", - "start_time": "2024-11-06T17:35:38.406553Z" + "end_time": "2024-11-08T21:41:56.179024Z", + "start_time": "2024-11-08T21:41:56.174051Z" } }, "cell_type": "code", @@ -161,8 +161,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T17:35:38.506917Z", - "start_time": "2024-11-06T17:35:38.451894Z" + "end_time": "2024-11-08T21:41:56.264346Z", + "start_time": "2024-11-08T21:41:56.220509Z" } }, "cell_type": "code", @@ -183,8 +183,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T17:35:38.529261Z", - "start_time": "2024-11-06T17:35:38.523315Z" + "end_time": "2024-11-08T21:41:56.281165Z", + "start_time": "2024-11-08T21:41:56.276683Z" } }, "cell_type": "code", @@ -196,8 +196,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T17:35:38.582363Z", - "start_time": "2024-11-06T17:35:38.569830Z" + "end_time": "2024-11-08T21:41:56.327634Z", + "start_time": "2024-11-08T21:41:56.320525Z" } }, "cell_type": "code", @@ -209,8 +209,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T17:35:38.629034Z", - "start_time": "2024-11-06T17:35:38.624162Z" + "end_time": "2024-11-08T21:41:56.373076Z", + "start_time": "2024-11-08T21:41:56.370711Z" } }, "cell_type": "code", diff --git a/notebooks/environmental_context_value_sets/water/env_broad_scale/post_google_sheets_water_env_broad_scale.tsv b/notebooks/environmental_context_value_sets/water/env_broad_scale/post_google_sheets_water_env_broad_scale.tsv new file mode 100644 index 00000000..3d6ecbf4 --- /dev/null +++ b/notebooks/environmental_context_value_sets/water/env_broad_scale/post_google_sheets_water_env_broad_scale.tsv @@ -0,0 +1,57 @@ +id label +ENVO:01000026 marine bathyal zone biome +ENVO:01000051 marine black smoker biome +ENVO:00000873 freshwater biome +ENVO:01000127 marine cold seep biome +ENVO:01000854 tropical marine coral reef biome +ENVO:01000028 marine hadal zone biome +ENVO:01000052 marine white smoker biome +ENVO:01000054 marine basaltic hydrothermal vent biome +ENVO:01000053 marine ultramafic hydrothermal vent biome +ENVO:01000041 neritic sea surface microlayer biome +ENVO:01000050 marine subtidal rocky reef biome +ENVO:01000027 marine abyssal zone biome +ENVO:01000029 marine reef biome +ENVO:01000128 dilution basin mediterranean sea biome +ENVO:01000856 temperate marginal sea biome +ENVO:01000860 temperate marine upwelling biome +ENVO:00002030 aquatic biome +ENVO:01000047 mediterranean sea biome +ENVO:01000045 epeiric sea biome +ENVO:00000889 large river delta biome +ENVO:01000123 marine sponge reef biome +ENVO:01001230 tropical marginal sea biome +ENVO:01000020 estuarine biome +ENVO:01000034 oceanic sea surface microlayer biome +ENVO:01000040 oceanic benthopelagic zone biome +ENVO:01000858 marine upwelling biome +ENVO:00000887 large river biome +ENVO:01000025 marine neritic benthic zone biome +ENVO:01000037 oceanic bathypelagic zone biome +ENVO:00000893 xeric basin biome +ENVO:01000022 marine salt marsh biome +ENVO:01000033 oceanic pelagic zone biome +ENVO:00000447 marine biome +ENVO:01000036 oceanic mesopelagic zone biome +ENVO:01000253 freshwater river biome +ENVO:01000049 marine coral reef biome +ENVO:01000857 temperate mediterranean sea biome +ENVO:01000046 marginal sea biome +ENVO:03605008 freshwater stream biome +ENVO:01000048 ocean biome +ENVO:01000039 oceanic hadal pelagic zone biome +ENVO:01000042 neritic epipelagic zone biome +ENVO:01000024 marine benthic biome +ENVO:01000023 marine pelagic biome +ENVO:00000888 large river headwater biome +ENVO:01000038 oceanic abyssopelagic zone biome +ENVO:00000891 large freshwater lake biome +ENVO:01000043 neritic mesopelagic zone biome +ENVO:00000892 small freshwater lake biome +ENVO:01000004 concentration basin mediterranean sea biome +ENVO:01000252 freshwater lake biome +ENVO:00000890 small river biome +ENVO:01000032 neritic pelagic zone biome +ENVO:01000035 oceanic epipelagic zone biome +ENVO:01000030 marine hydrothermal vent biome +ENVO:01000859 tropical marine upwelling biome diff --git a/notebooks/environmental_context_value_sets/water/env_medium/.gitkeep b/notebooks/environmental_context_value_sets/water/env_medium/.gitkeep deleted file mode 100644 index e69de29b..00000000 diff --git a/notebooks/environmental_context_value_sets/water/env_broad_scale/post_google_sheets_water_env_medium.ipynb b/notebooks/environmental_context_value_sets/water/env_medium/post_google_sheets_water_env_medium.ipynb similarity index 80% rename from notebooks/environmental_context_value_sets/water/env_broad_scale/post_google_sheets_water_env_medium.ipynb rename to notebooks/environmental_context_value_sets/water/env_medium/post_google_sheets_water_env_medium.ipynb index 0a9cf572..1c86c85c 100644 --- a/notebooks/environmental_context_value_sets/water/env_broad_scale/post_google_sheets_water_env_medium.ipynb +++ b/notebooks/environmental_context_value_sets/water/env_medium/post_google_sheets_water_env_medium.ipynb @@ -6,8 +6,8 @@ "metadata": { "collapsed": true, "ExecuteTime": { - "end_time": "2024-11-06T18:01:34.968569Z", - "start_time": "2024-11-06T18:01:32.194183Z" + "end_time": "2024-11-08T21:43:13.567810Z", + "start_time": "2024-11-08T21:43:09.780607Z" } }, "source": [ @@ -23,8 +23,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:34.976699Z", - "start_time": "2024-11-06T18:01:34.973538Z" + "end_time": "2024-11-08T21:43:13.577019Z", + "start_time": "2024-11-08T21:43:13.573433Z" } }, "cell_type": "code", @@ -36,8 +36,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.039500Z", - "start_time": "2024-11-06T18:01:35.036491Z" + "end_time": "2024-11-08T21:43:13.655688Z", + "start_time": "2024-11-08T21:43:13.652623Z" } }, "cell_type": "code", @@ -49,8 +49,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.083290Z", - "start_time": "2024-11-06T18:01:35.079759Z" + "end_time": "2024-11-08T21:43:13.701480Z", + "start_time": "2024-11-08T21:43:13.697189Z" } }, "cell_type": "code", @@ -62,8 +62,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.130926Z", - "start_time": "2024-11-06T18:01:35.127664Z" + "end_time": "2024-11-08T21:43:13.752644Z", + "start_time": "2024-11-08T21:43:13.745825Z" } }, "cell_type": "code", @@ -91,8 +91,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.177640Z", - "start_time": "2024-11-06T18:01:35.174628Z" + "end_time": "2024-11-08T21:43:13.802745Z", + "start_time": "2024-11-08T21:43:13.797395Z" } }, "cell_type": "code", @@ -104,8 +104,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.225409Z", - "start_time": "2024-11-06T18:01:35.222555Z" + "end_time": "2024-11-08T21:43:13.850907Z", + "start_time": "2024-11-08T21:43:13.846675Z" } }, "cell_type": "code", @@ -117,8 +117,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.273071Z", - "start_time": "2024-11-06T18:01:35.270032Z" + "end_time": "2024-11-08T21:43:13.897970Z", + "start_time": "2024-11-08T21:43:13.894600Z" } }, "cell_type": "code", @@ -134,8 +134,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.321332Z", - "start_time": "2024-11-06T18:01:35.318509Z" + "end_time": "2024-11-08T21:43:13.948094Z", + "start_time": "2024-11-08T21:43:13.945310Z" } }, "cell_type": "code", @@ -152,8 +152,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.369114Z", - "start_time": "2024-11-06T18:01:35.365911Z" + "end_time": "2024-11-08T21:43:13.996979Z", + "start_time": "2024-11-08T21:43:13.992715Z" } }, "cell_type": "code", @@ -169,8 +169,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.418020Z", - "start_time": "2024-11-06T18:01:35.415071Z" + "end_time": "2024-11-08T21:43:14.043726Z", + "start_time": "2024-11-08T21:43:14.040284Z" } }, "cell_type": "code", @@ -182,8 +182,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.464867Z", - "start_time": "2024-11-06T18:01:35.461865Z" + "end_time": "2024-11-08T21:43:14.090860Z", + "start_time": "2024-11-08T21:43:14.087951Z" } }, "cell_type": "code", @@ -195,8 +195,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.511596Z", - "start_time": "2024-11-06T18:01:35.508599Z" + "end_time": "2024-11-08T21:43:14.139363Z", + "start_time": "2024-11-08T21:43:14.136338Z" } }, "cell_type": "code", @@ -213,8 +213,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.558753Z", - "start_time": "2024-11-06T18:01:35.555750Z" + "end_time": "2024-11-08T21:43:14.185586Z", + "start_time": "2024-11-08T21:43:14.182662Z" } }, "cell_type": "code", @@ -226,8 +226,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.605646Z", - "start_time": "2024-11-06T18:01:35.602728Z" + "end_time": "2024-11-08T21:43:14.236302Z", + "start_time": "2024-11-08T21:43:14.231157Z" } }, "cell_type": "code", @@ -239,8 +239,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.694267Z", - "start_time": "2024-11-06T18:01:35.649637Z" + "end_time": "2024-11-08T21:43:14.316655Z", + "start_time": "2024-11-08T21:43:14.280599Z" } }, "cell_type": "code", @@ -252,8 +252,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.706020Z", - "start_time": "2024-11-06T18:01:35.703201Z" + "end_time": "2024-11-08T21:43:14.337130Z", + "start_time": "2024-11-08T21:43:14.333574Z" } }, "cell_type": "code", @@ -265,8 +265,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.829583Z", - "start_time": "2024-11-06T18:01:35.745102Z" + "end_time": "2024-11-08T21:43:14.462574Z", + "start_time": "2024-11-08T21:43:14.381827Z" } }, "cell_type": "code", @@ -291,7 +291,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "52\n" + "65\n" ] } ], @@ -300,8 +300,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.942557Z", - "start_time": "2024-11-06T18:01:35.838912Z" + "end_time": "2024-11-08T21:43:14.976493Z", + "start_time": "2024-11-08T21:43:14.486715Z" } }, "cell_type": "code", @@ -322,7 +322,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "37\n" + "49\n" ] } ], @@ -331,8 +331,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:35.984030Z", - "start_time": "2024-11-06T18:01:35.953594Z" + "end_time": "2024-11-08T21:43:15.010209Z", + "start_time": "2024-11-08T21:43:14.982036Z" } }, "cell_type": "code", @@ -357,8 +357,8 @@ { "metadata": { "ExecuteTime": { - "end_time": "2024-11-06T18:01:36.000799Z", - "start_time": "2024-11-06T18:01:35.998681Z" + "end_time": "2024-11-08T21:43:15.034737Z", + "start_time": "2024-11-08T21:43:15.031683Z" } }, "cell_type": "code", diff --git a/notebooks/environmental_context_value_sets/water/env_medium/post_google_sheets_water_env_medium.tsv b/notebooks/environmental_context_value_sets/water/env_medium/post_google_sheets_water_env_medium.tsv new file mode 100644 index 00000000..f64b8200 --- /dev/null +++ b/notebooks/environmental_context_value_sets/water/env_medium/post_google_sheets_water_env_medium.tsv @@ -0,0 +1,50 @@ +id label +ENVO:00003065 distilled water +ENVO:00002012 hypersaline water +ENVO:03600081 cloud water +ENVO:00005793 muddy water +ENVO:01001038 moderately saline water +ENVO:03600009 interstitial water +ENVO:00005792 underground water +ENVO:00002150 coastal sea water +ENVO:00002141 leachate +ENVO:01000358 acidic water +ENVO:01000173 anoxic water +ENVO:00002019 brackish water +ENVO:01001064 hypoxic water +ENVO:00002224 eutrophic water +ENVO:01001018 hypereutrophic water +ENVO:01000301 estuarine water +ENVO:01001270 rural stormwater +ENVO:01001267 stormwater +ENVO:03501370 stagnant water +ENVO:01000357 alkaline water +ENVO:00002228 pond water +ENVO:00002010 saline water +ENVO:00002006 liquid water +ENVO:01000722 meltwater +ENVO:00002011 fresh water +ENVO:00003044 brine +ENVO:01001039 highly saline water +ENVO:00002149 sea water +ENVO:01001004 groundwater +ENVO:00002223 oligotrophic water +ENVO:01000872 ballast water +ENVO:01001063 oxic water +ENVO:00003096 tap water +ENVO:01001257 saline shrimp pond water +ENVO:00002159 drilling bore water +ENVO:01001268 urban stormwater +ENVO:01000600 rainwater +ENVO:00002042 surface water +ENVO:00002225 mesotrophic water +ENVO:00003064 drinking water +ENVO:01000134 hydrothermal fluid +ENVO:00005791 sterile water +ENVO:06105269 desalinated water +ENVO:00003045 bacon curing brine +ENVO:02000145 subterranean lake +ENVO:03600002 cooling water +ENVO:01001037 slightly saline water +ENVO:00002142 borax leachate +ENVO:00002158 ditch water