From e35fb7dd27f91a663f0f31a12a17317d0a71ed3c Mon Sep 17 00:00:00 2001 From: Patrick Kalita Date: Thu, 18 Jan 2024 14:44:49 -0800 Subject: [PATCH 1/5] Exclude examples/output from git --- .gitignore | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.gitignore b/.gitignore index e34c536d..7441594d 100644 --- a/.gitignore +++ b/.gitignore @@ -137,3 +137,5 @@ dmypy.json # Pyre type checker .pyre/ + +/examples/output From 8d322ac7f1fe5fb076b147f651cf8808d677734c Mon Sep 17 00:00:00 2001 From: Patrick Kalita Date: Thu, 18 Jan 2024 14:49:41 -0800 Subject: [PATCH 2/5] Add script to inject ecosystem pathway terms as enums based on JSON file from GOLD --- project.Makefile | 8 +- project/thirdparty/GoldEcosystemTree.json | 7952 ++++++++++++++++++ pyproject.toml | 7 +- src/nmdc_submission_schema/datamodel/gold.py | 76 + 4 files changed, 8038 insertions(+), 5 deletions(-) create mode 100644 project/thirdparty/GoldEcosystemTree.json create mode 100644 src/nmdc_submission_schema/datamodel/gold.py diff --git a/project.Makefile b/project.Makefile index c13d51a8..5281dbed 100644 --- a/project.Makefile +++ b/project.Makefile @@ -207,8 +207,8 @@ local/nmdc.yaml --format yaml $@.raw > $@ - $(RUN) linkml-lint $@ > local/with_modifications.lint_report.txt -src/nmdc_submission_schema/schema/nmdc_submission_schema.yaml: local/with_modifications.yaml - cp $< $@ +src/nmdc_submission_schema/schema/nmdc_submission_schema.yaml: local/with_modifications.yaml project/thirdparty/GoldEcosystemTree.json + inject-gold-pathway-terms -g $(word 2,$^) -i $< -o $@ # remove the multivalued true annotation from these gloabl slot definitions for the sake of linkml-convert # esp to tsv? and dumping to SQLite? # follow the .string_serialization=="{text};{float} {unit}" and .multivalued == true pattern? @@ -310,6 +310,10 @@ project/json/nmdc_submission_schema.json: src/nmdc_submission_schema/schema/nmdc mkdir -p $(@D) $(RUN) gen-linkml $< --format json --materialize-patterns --materialize-attributes > $@ +project/thirdparty/GoldEcosystemTree.json: + mkdir -p $(@D) + wget https://gold.jgi.doe.gov/download?mode=biosampleEcosystemsJson -O $@ + dh-dev: project/json/nmdc_submission_schema.json cd data_harmonizer && npm run dev diff --git a/project/thirdparty/GoldEcosystemTree.json b/project/thirdparty/GoldEcosystemTree.json new file mode 100644 index 00000000..9c84ae95 --- /dev/null +++ b/project/thirdparty/GoldEcosystemTree.json @@ -0,0 +1,7952 @@ +{ +"name": "Ecosystems", +"children": [ + +{"name": "Engineered", "count": "16963" , "url": "search?Biosample.Ecosystem=Engineered" , "children" : [ + {"name": "Animal feed production" , "count": "0" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Animal feed production" , "children" : [ + {"name": "Fermentation" , "count": "0" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Animal feed production&Biosample.Ecosystem+Type=Fermentation" , "children" : [ + {"name": "Swine waste with corn" , "count": "0" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Animal feed production&Biosample.Ecosystem+Type=Fermentation&Biosample.Ecosystem+Subtype=Swine waste with corn" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Animal feed production&Biosample.Ecosystem+Type=Fermentation&Biosample.Ecosystem+Subtype=Swine waste with corn&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Animal feed production&Biosample.Ecosystem+Type=Fermentation&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Animal feed production&Biosample.Ecosystem+Type=Fermentation&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}] +}, + + {"name": "Artificial ecosystem" , "count": "2070" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Artificial ecosystem" , "children" : [ + {"name": "Aquaculture" , "count": "16" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Artificial ecosystem&Biosample.Ecosystem+Type=Aquaculture" , "children" : [ + {"name": "Algae raceway pond" , "count": "4" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Artificial ecosystem&Biosample.Ecosystem+Type=Aquaculture&Biosample.Ecosystem+Subtype=Algae raceway pond" , "children" : [ + {"name": "Pond scum" , "count": "0" , "url": "search?Biosample.Ecosystem=Engineered&Biosample.Ecosystem+Category=Artificial ecosystem&Biosample.Ecosystem+Type=Aquaculture&Biosample.Ecosystem+Subtype=Algae raceway pond&Biosample.Specific Ecosystem=Pond scum" }, + + {"name": "Sediment" , "count": "0" , "url": 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Ecosystem=Well" }, + + {"name": "Well biofilm" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Deep subsurface&Biosample.Ecosystem+Subtype=Groundwater&Biosample.Specific Ecosystem=Well biofilm" }, + + {"name": "Well sediment" , "count": "2" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Deep subsurface&Biosample.Ecosystem+Subtype=Groundwater&Biosample.Specific Ecosystem=Well sediment" }] +}, + + {"name": "Shale gas reservoir" , "count": "86" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Deep subsurface&Biosample.Ecosystem+Subtype=Shale gas reservoir" , "children" : [ + {"name": "Produced water/Flow back" , "count": "86" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Deep subsurface&Biosample.Ecosystem+Subtype=Shale gas reservoir&Biosample.Specific Ecosystem=Produced water/Flow back" }] +}, + + {"name": "Subglacial lake" , "count": "6" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Deep subsurface&Biosample.Ecosystem+Subtype=Subglacial lake" , "children" : [ + {"name": "Sediment" , "count": "3" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Deep subsurface&Biosample.Ecosystem+Subtype=Subglacial lake&Biosample.Specific Ecosystem=Sediment" }, + + {"name": "Unclassified" , "count": "3" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Deep subsurface&Biosample.Ecosystem+Subtype=Subglacial lake&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Subterranean lake" , "count": "97" , "url": 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"search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Drinking water" , "children" : [ + {"name": "Chloraminated" , "count": "32" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Drinking water&Biosample.Specific Ecosystem=Chloraminated" }, + + {"name": "Chlorinated" , "count": "94" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Drinking water&Biosample.Specific Ecosystem=Chlorinated" }, + + {"name": "Delivery networks" , "count": "28" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Drinking water&Biosample.Specific Ecosystem=Delivery networks" }, + + {"name": "Filtered water" , "count": "0" 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"search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Floodplain lake&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Glacier" , "count": "6" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Glacier" , "children" : [ + {"name": "Cryoconite hole" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Glacier&Biosample.Specific Ecosystem=Cryoconite hole" }, + + {"name": "Glacier stream" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Glacier&Biosample.Specific Ecosystem=Glacier stream" }, + + {"name": "Ice" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Glacier&Biosample.Specific Ecosystem=Ice" }, + + {"name": "Meltwater" , "count": "6" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Glacier&Biosample.Specific Ecosystem=Meltwater" }] +}, + + {"name": "Groundwater" , "count": "602" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Groundwater" , "children" : [ + {"name": "Acid Mine Drainage" , "count": "60" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Groundwater&Biosample.Specific Ecosystem=Acid Mine Drainage" }, + + {"name": "Aquifer" , "count": "13" , "url": 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"search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Harbor" , "children" : [ + {"name": "Unclassified" , "count": "3" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Harbor&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Ice" , "count": "587" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Ice" , "children" : [ + {"name": "Cryoconite" , "count": "49" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Ice&Biosample.Specific Ecosystem=Cryoconite" }, + + {"name": "Glacial lake" , "count": "306" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Ice&Biosample.Specific Ecosystem=Glacial lake" }, + + {"name": "Glacier" , "count": "208" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Ice&Biosample.Specific Ecosystem=Glacier" }, + + {"name": "Glacier meltwater" , "count": "6" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Ice&Biosample.Specific Ecosystem=Glacier meltwater" }, + + {"name": "Ice accretions" , "count": "1" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Ice&Biosample.Specific Ecosystem=Ice accretions" }, + + {"name": "Liftoff microbial mat" , "count": "6" , "url": 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"search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Kettle hole&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Lake" , "count": "9035" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Lake" , "children" : [ + {"name": "Algal bloom" , "count": "8" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Lake&Biosample.Specific Ecosystem=Algal bloom" }, + + {"name": "Anoxic zone" , "count": "27" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Lake&Biosample.Specific Ecosystem=Anoxic zone" }, + + {"name": "Aphotic zone" , "count": "0" , "url": 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zone" }, + + {"name": "Lake biofilm" , "count": "5" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Lake&Biosample.Specific Ecosystem=Lake biofilm" }, + + {"name": "Littoral zone" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Lake&Biosample.Specific Ecosystem=Littoral zone" }, + + {"name": "Metalimnion/Thermocline" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Lake&Biosample.Specific Ecosystem=Metalimnion/Thermocline" }, + + {"name": "Microbial mats" , "count": "29" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Lake&Biosample.Specific Ecosystem=Microbial mats" }, + + {"name": "Sediment" , "count": "1498" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Lake&Biosample.Specific Ecosystem=Sediment" }, + + {"name": "Unclassified" , "count": "6518" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Lake&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Lentic" , "count": "105" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Lentic" , "children" : [ + {"name": "Epilimnion" , "count": "9" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Lentic&Biosample.Specific Ecosystem=Epilimnion" }, + + {"name": 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"search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Puddle&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Rainwater" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Rainwater" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Rainwater&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Reservoir" , "count": "305" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Reservoir" , "children" : [ + {"name": "Sediment" , "count": "13" , "url": 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"search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Sterile water" , "children" : [ + {"name": "Unclassified" , "count": "39" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Sterile water&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Storm water" , "count": "15" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Storm water" , "children" : [ + {"name": "Drainage pipe biofilm" , "count": "4" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Storm water&Biosample.Specific Ecosystem=Drainage pipe biofilm" }, + + {"name": "Unclassified" , "count": "1" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Storm water&Biosample.Specific Ecosystem=Unclassified" }, + + {"name": "Urban floodwater" , "count": "10" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Storm water&Biosample.Specific Ecosystem=Urban floodwater" }] +}, + + {"name": "Subglacial lake" , "count": "7" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Subglacial lake" , "children" : [ + {"name": "Unclassified" , "count": "7" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Subglacial lake&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Subterranean lake" , "count": "2" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Subterranean lake" , "children" : [ + {"name": "Unclassified" , "count": "2" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Subterranean lake&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Tap water" , "count": "26" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Tap water" , "children" : [ + {"name": "Unclassified" , "count": "26" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Tap water&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Unclassified" , "count": "1360" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "1360" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Water tank" , "count": "54" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Water tank" , "children" : [ + {"name": "Unclassified" , "count": "54" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Water tank&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Wetlands" , "count": "746" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Wetlands" , "children" : [ + {"name": "Bog" , "count": "12" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Wetlands&Biosample.Specific Ecosystem=Bog" }, + + {"name": "Fen" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Wetlands&Biosample.Specific Ecosystem=Fen" }, + + {"name": "Marsh" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Wetlands&Biosample.Specific Ecosystem=Marsh" }, + + {"name": "Microbial mat" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Wetlands&Biosample.Specific Ecosystem=Microbial mat" }, + + {"name": "Sediment" , "count": "542" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Wetlands&Biosample.Specific Ecosystem=Sediment" }, + + {"name": "Soil" , "count": "110" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Wetlands&Biosample.Specific Ecosystem=Soil" }, + + {"name": "Swamp" , "count": "3" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Wetlands&Biosample.Specific Ecosystem=Swamp" }, + + {"name": "Unclassified" , "count": "79" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Freshwater&Biosample.Ecosystem+Subtype=Wetlands&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Marine" , "count": "26489" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine" , "children" : [ + {"name": "Abyssopelagic" , "count": "7" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Abyssopelagic" , "children" : [ + {"name": "Unclassified" , "count": "7" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Abyssopelagic&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Aquifer" , "count": "3" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Aquifer" , "children" : [ + {"name": "Formation fluid" , "count": "3" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Aquifer&Biosample.Specific Ecosystem=Formation fluid" }] +}, + + {"name": "Archipelago" , "count": "8" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Archipelago" , "children" : [ + {"name": "Sediment" , "count": "8" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Archipelago&Biosample.Specific Ecosystem=Sediment" }] +}, + + {"name": "Atoll lagoon" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Atoll lagoon" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Atoll lagoon&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Bathypelagic" , "count": "30" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Bathypelagic" , "children" : [ + {"name": "Unclassified" , "count": "30" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Bathypelagic&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Benthic" , "count": "6" , "url": 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"search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Hydrothermal vents" , "children" : [ + {"name": "Black smokers" , "count": "25" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Hydrothermal vents&Biosample.Specific Ecosystem=Black smokers" }, + + {"name": "Diffuse flow" , "count": "261" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Hydrothermal vents&Biosample.Specific Ecosystem=Diffuse flow" }, + + {"name": "Hydrothermal plume" , "count": "1" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Hydrothermal vents&Biosample.Specific Ecosystem=Hydrothermal plume" }, + + {"name": "Microbial mats" , "count": 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{"name": "Hypoxic zone" , "count": "137" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Hypoxic zone" , "children" : [ + {"name": "Unclassified" , "count": "137" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Hypoxic zone&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Inlet" , "count": "1278" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Inlet" , "children" : [ + {"name": "Unclassified" , "count": "1278" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Inlet&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Intertidal zone" , "count": "3286" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone" , "children" : [ + {"name": "Beach/Shore" , "count": "750" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Beach/Shore" }, + + {"name": "Coral reef" , "count": "229" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Coral reef" }, + + {"name": "Estuary" , "count": "778" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Estuary" }, + + {"name": "Estuary: Microbial mat" , "count": "13" , "url": 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{"name": "Mangrove swamp" , "count": "232" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Mangrove swamp" }, + + {"name": "Microbialites" , "count": "54" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Microbialites" }, + + {"name": "Oil-contaminated" , "count": "1" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Oil-contaminated" }, + + {"name": "Oil-contaminated sediment" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Oil-contaminated sediment" }, + + {"name": "Salt marsh" , "count": "387" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Salt marsh" }, + + {"name": "Salt marsh sediment" , "count": "139" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Salt marsh sediment" }, + + {"name": "Salt pond" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Salt pond" }, + + {"name": "Salt pond sediment" , "count": "22" , "url": 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solterns" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Solar solterns" }, + + {"name": "Solar solterns sediment" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Solar solterns sediment" }, + + {"name": "Subterranean estuary" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Subterranean estuary" }, + + {"name": "Thrombolites" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Thrombolites" }, + + {"name": "Tidal flats" , "count": "65" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Tidal flats" }, + + {"name": "Unclassified" , "count": "312" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Intertidal zone&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Littoral zone" , "count": "48" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Littoral zone" , "children" : [ + {"name": "Intertidal zone" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Littoral zone&Biosample.Specific Ecosystem=Intertidal zone" }, + + {"name": "Neritic zone/Coastal water" , "count": "48" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Littoral zone&Biosample.Specific Ecosystem=Neritic zone/Coastal water" }, + + {"name": "Sediment" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Littoral zone&Biosample.Specific Ecosystem=Sediment" }, + + {"name": "Supratidal zone" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Littoral zone&Biosample.Specific Ecosystem=Supratidal zone" }, + + {"name": "Unclassified" , "count": "0" , "url": 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"search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Mud&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Mud volcano" , "count": "33" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Mud volcano" , "children" : [ + {"name": "Sediment" , "count": "10" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Mud volcano&Biosample.Specific Ecosystem=Sediment" }, + + {"name": "Unclassified" , "count": "23" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Mud volcano&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Neritic zone/Coastal water" , "count": "347" , "url": 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"Sea-ice brine" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Neritic zone/Coastal water&Biosample.Specific Ecosystem=Sea-ice brine" }, + + {"name": "Sediment" , "count": "21" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Neritic zone/Coastal water&Biosample.Specific Ecosystem=Sediment" }, + + {"name": "Subtidal zone" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Neritic zone/Coastal water&Biosample.Specific Ecosystem=Subtidal zone" }, + + {"name": "Subtidal zone sediment" , "count": "74" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Neritic zone/Coastal water&Biosample.Specific Ecosystem=Subtidal zone sediment" }, + + {"name": "Unclassified" , "count": "247" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Neritic zone/Coastal water&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Ocean trench" , "count": "70" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Ocean trench" , "children" : [ + {"name": "Sediment" , "count": "5" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Ocean trench&Biosample.Specific Ecosystem=Sediment" }, + + {"name": "Unclassified" , "count": "65" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Ocean trench&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Oceanic" , "count": "5927" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Oceanic" , "children" : [ + {"name": "Abyssal plane" , "count": "77" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Oceanic&Biosample.Specific Ecosystem=Abyssal plane" }, + + {"name": "Aphotic zone" , "count": "64" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Oceanic&Biosample.Specific Ecosystem=Aphotic zone" }, + + {"name": "Benthic" , "count": "7" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Oceanic&Biosample.Specific Ecosystem=Benthic" }, + + {"name": "Crustal Fluids" , "count": "55" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Oceanic&Biosample.Specific Ecosystem=Crustal Fluids" }, + + {"name": "Microbial mats" , "count": "3" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Oceanic&Biosample.Specific Ecosystem=Microbial mats" }, + + {"name": "Oceanic crust" , "count": "28" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Oceanic&Biosample.Specific Ecosystem=Oceanic crust" }, + + {"name": "Oil-contaminated" , "count": "13" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Oceanic&Biosample.Specific Ecosystem=Oil-contaminated" }, + + {"name": "Oil-contaminated sediment" , "count": "27" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Oceanic&Biosample.Specific Ecosystem=Oil-contaminated sediment" }, + + {"name": "Photic zone" , "count": "247" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Oceanic&Biosample.Specific Ecosystem=Photic zone" }, + + {"name": "Plankton" , "count": "4" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Oceanic&Biosample.Specific Ecosystem=Plankton" }, + + {"name": "Rock" , "count": "3" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Oceanic&Biosample.Specific Ecosystem=Rock" }, + + {"name": "Sediment" , "count": "366" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Oceanic&Biosample.Specific Ecosystem=Sediment" }, + + {"name": "Unclassified" , "count": "5033" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Oceanic&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Oil seeps" , "count": "8" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Oil seeps" , "children" : [ + {"name": "Unclassified" , "count": "8" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Oil seeps&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Pelagic zone" , "count": "813" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Pelagic zone" , "children" : [ + {"name": "Abyssopelagic/Abyssal zone" , "count": "27" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Pelagic zone&Biosample.Specific Ecosystem=Abyssopelagic/Abyssal zone" }, + + {"name": "Bathypelagic/Bathyal zone" , "count": "4" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Pelagic zone&Biosample.Specific Ecosystem=Bathypelagic/Bathyal zone" }, + + {"name": "Epipelagic/Euphotic zone" , "count": "191" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Pelagic zone&Biosample.Specific Ecosystem=Epipelagic/Euphotic zone" }, + 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"search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Pelagic zone&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "River plume" , "count": "22" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=River plume" , "children" : [ + {"name": "Plankton" , "count": "22" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=River plume&Biosample.Specific Ecosystem=Plankton" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=River plume&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Sea ice" , "count": "85" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Sea ice" , "children" : [ + {"name": "Cryoconite" , "count": "3" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Sea ice&Biosample.Specific Ecosystem=Cryoconite" }, + + {"name": "Melt pond" , "count": "6" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Sea ice&Biosample.Specific Ecosystem=Melt pond" }, + + {"name": "Unclassified" , "count": "76" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Sea ice&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Seaweed" , "count": "90" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Seaweed" , "children" : [ + {"name": "Unclassified" , "count": "90" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Seaweed&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Sediment" , "count": "519" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Sediment" , "children" : [ + {"name": "Unclassified" , "count": "519" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Sediment&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Shipwreck" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Shipwreck" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Shipwreck&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Strait" , "count": "251" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Strait" , "children" : [ + {"name": "Sediment" , "count": "3" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Strait&Biosample.Specific Ecosystem=Sediment" }, + + {"name": "Unclassified" , "count": "248" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Strait&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Subtidal zone" , "count": "3" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Subtidal zone" , "children" : [ + {"name": "Sediment" , "count": "3" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Subtidal zone&Biosample.Specific Ecosystem=Sediment" }] +}, + + {"name": "Supratidal zone" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Supratidal zone" , "children" : [ + {"name": "Sabkha" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Supratidal zone&Biosample.Specific Ecosystem=Sabkha" }, + + {"name": "Sabkha sediment" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Supratidal zone&Biosample.Specific Ecosystem=Sabkha sediment" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Supratidal zone&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Unclassified" , "count": "5244" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "5244" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Volcanic" , "count": "25" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Volcanic" , "children" : [ + {"name": "Unclassified" , "count": "25" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Volcanic&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Wetlands" , "count": "441" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Marine&Biosample.Ecosystem+Subtype=Wetlands" , "children" : [ + {"name": "Sediment" , "count": "327" , "url": 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Ecosystem=Sediment" }, + + {"name": "Unclassified" , "count": "25" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Alkaline&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Fracking water" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Fracking water" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Fracking water&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Hypersaline" , "count": "376" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline 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Alkaline&Biosample.Ecosystem+Subtype=Hypersaline soda lake" , "children" : [ + {"name": "Microbial mats" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Hypersaline soda lake&Biosample.Specific Ecosystem=Microbial mats" }, + + {"name": "Microbialites" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Hypersaline soda lake&Biosample.Specific Ecosystem=Microbialites" }, + + {"name": "Sediment" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Hypersaline soda lake&Biosample.Specific Ecosystem=Sediment" }, + + {"name": "Unclassified" , "count": "0" , "url": 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"Unclassified" , "count": "89" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Lake&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Near-boiling (>90C)" , "count": "1" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Near-boiling (>90C)" , "children" : [ + {"name": "Alkaline" , "count": "1" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Near-boiling (>90C)&Biosample.Specific Ecosystem=Alkaline" }] +}, + + {"name": "Saline" , "count": "961" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Saline" , "children" : [ + {"name": "Athalassic" , "count": "4" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Saline&Biosample.Specific Ecosystem=Athalassic" }, + + {"name": "Epilimnion" , "count": "2" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Saline&Biosample.Specific Ecosystem=Epilimnion" }, + + {"name": "Hypolimnion" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Saline&Biosample.Specific Ecosystem=Hypolimnion" }, + + {"name": "Microbial mats" , "count": "11" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Saline&Biosample.Specific Ecosystem=Microbial mats" }, + + {"name": "Sediment" , "count": "41" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Saline&Biosample.Specific Ecosystem=Sediment" }, + + {"name": "Thalassic" , "count": "1" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Saline&Biosample.Specific Ecosystem=Thalassic" }, + + {"name": "Unclassified" , "count": "902" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Saline&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Saline lake" , "count": "33" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Saline lake" , "children" : [ + {"name": "Ice core" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Saline lake&Biosample.Specific Ecosystem=Ice core" }, + + {"name": "Microbial mats" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Saline lake&Biosample.Specific Ecosystem=Microbial mats" }, + + {"name": "Sediment" , "count": "8" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Saline lake&Biosample.Specific Ecosystem=Sediment" }, + + {"name": "Unclassified" , "count": "25" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Saline lake&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Salt crystallizer ponds" , "count": "108" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Salt crystallizer ponds" , "children" : [ + {"name": "Microbial mats" , "count": "13" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Salt crystallizer ponds&Biosample.Specific Ecosystem=Microbial mats" }, + + {"name": "Saline water" , "count": "18" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Salt crystallizer ponds&Biosample.Specific Ecosystem=Saline water" }, + + {"name": "Unclassified" , "count": "77" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Salt crystallizer ponds&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Salt marsh" , "count": "1" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Salt marsh" , "children" : [ + {"name": "Sediment" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Salt marsh&Biosample.Specific Ecosystem=Sediment" }, + + {"name": "Unclassified" , "count": "1" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Salt marsh&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Soda lake" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Soda lake" , "children" : [ + {"name": "Microbial mats" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Soda lake&Biosample.Specific Ecosystem=Microbial mats" }, + + {"name": "Sediment" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Soda lake&Biosample.Specific Ecosystem=Sediment" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Soda lake&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Solar solterns" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Solar solterns" , "children" : [ + {"name": "Sediment" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Solar solterns&Biosample.Specific Ecosystem=Sediment" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Solar solterns&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Sub-saline lake" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Sub-saline lake" , "children" : [ + {"name": "Sediment" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Sub-saline lake&Biosample.Specific Ecosystem=Sediment" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Sub-saline lake&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Unclassified" , "count": "74" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "74" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Non-marine Saline and Alkaline&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Pit lake" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Pit lake" , "children" : [ + {"name": "Mine pit lake" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Pit lake&Biosample.Ecosystem+Subtype=Mine pit lake" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Pit lake&Biosample.Ecosystem+Subtype=Mine pit lake&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Oil sands pit lake" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Pit lake&Biosample.Ecosystem+Subtype=Oil sands pit lake" , "children" : [ + {"name": "Sediment" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Pit lake&Biosample.Ecosystem+Subtype=Oil sands pit lake&Biosample.Specific Ecosystem=Sediment" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Pit lake&Biosample.Ecosystem+Subtype=Oil sands pit lake&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Pit lake&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Pit lake&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Sediment" , "count": "87" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Sediment" , "children" : [ + {"name": "Unclassified" , "count": "87" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Sediment&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "87" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Sediment&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Thermal springs" , "count": "3473" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Thermal springs" , "children" : [ + {"name": "Acid lake" , "count": "2" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Thermal springs&Biosample.Ecosystem+Subtype=Acid lake" , "children" : [ + {"name": "Sediment" , "count": "1" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Aquatic&Biosample.Ecosystem+Type=Thermal springs&Biosample.Ecosystem+Subtype=Acid lake&Biosample.Specific Ecosystem=Sediment" }, + + {"name": "Unclassified" , "count": "1" , "url": 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nest&Biosample.Specific Ecosystem=Nest dump" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Nest&Biosample.Ecosystem+Subtype=Insects nest&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Rodent burrow" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Nest&Biosample.Ecosystem+Subtype=Rodent burrow" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Nest&Biosample.Ecosystem+Subtype=Rodent burrow&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Oil reservoir" , "count": "64" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Oil reservoir" , "children" : [ + {"name": "Oil" 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, "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Chaparral" , "children" : [ + {"name": "Unclassified" , "count": "47" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Chaparral&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "City park" , "count": "142" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=City park" , "children" : [ + {"name": "Unclassified" , "count": "142" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=City park&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Clay" , "count": "111" , "url": 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"search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Garden" , "children" : [ + {"name": "Green roof" , "count": "24" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Garden&Biosample.Specific Ecosystem=Green roof" }, + + {"name": "Unclassified" , "count": "91" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Garden&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Geothermal field" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Geothermal field" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": 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"count": "94" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Glacier&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Grasslands" , "count": "3213" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Grasslands" , "children" : [ + {"name": "Bulk soil" , "count": "354" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Grasslands&Biosample.Specific Ecosystem=Bulk soil" }, + + {"name": "Pasture" , "count": "137" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Grasslands&Biosample.Specific Ecosystem=Pasture" }, + + {"name": "Unclassified" , "count": "2722" , "url": 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"search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Lakeshore" , "children" : [ + {"name": "Unclassified" , "count": "12" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Lakeshore&Biosample.Specific Ecosystem=Unclassified" }, + + {"name": "Upland zone" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Lakeshore&Biosample.Specific Ecosystem=Upland zone" }, + + {"name": "Wetland zone" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Lakeshore&Biosample.Specific Ecosystem=Wetland zone" }] +}, + + {"name": "Landfill" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Landfill" , "children" : [ + {"name": "Cover soil" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Landfill&Biosample.Specific Ecosystem=Cover soil" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Landfill&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Laurel/Subtropical forest" , "count": "15" , "url": "search?Biosample.Ecosystem=Environmental&Biosample.Ecosystem+Category=Terrestrial&Biosample.Ecosystem+Type=Soil&Biosample.Ecosystem+Subtype=Laurel/Subtropical forest" , "children" : [ + {"name": "A horizon/Topsoil" , "count": "15" , "url": 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intestine&Biosample.Specific Ecosystem=Cloaca" }, + + {"name": "Colon mucosa" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Large intestine&Biosample.Specific Ecosystem=Colon mucosa" }, + + {"name": "Fecal" , "count": "6356" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Large intestine&Biosample.Specific Ecosystem=Fecal" }, + + {"name": "Meconium" , "count": "21" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Large intestine&Biosample.Specific Ecosystem=Meconium" }, + + {"name": "Proximal colon" , "count": "6" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Large intestine&Biosample.Specific Ecosystem=Proximal colon" }, + + {"name": "Rectal mucosa" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Large intestine&Biosample.Specific Ecosystem=Rectal mucosa" }, + + {"name": "Rectum" , "count": "117" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Large intestine&Biosample.Specific Ecosystem=Rectum" }, + + {"name": "Unclassified" , "count": "84" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Large intestine&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Lower gastrointestinal tract" , "count": "44" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Lower gastrointestinal tract" , "children" : [ + {"name": "Ileum-cecum" , "count": "39" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Lower gastrointestinal tract&Biosample.Specific Ecosystem=Ileum-cecum" }, + + {"name": "Intestinal mucosa" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Lower gastrointestinal tract&Biosample.Specific Ecosystem=Intestinal mucosa" }, + + {"name": "Unclassified" , "count": "5" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Lower gastrointestinal tract&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Oral cavity" , "count": "124" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity" , "children" : [ + {"name": "Attached/Keratinized gingiva" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Attached/Keratinized gingiva" }, + + {"name": "Buccal mucosa" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Buccal mucosa" }, + + {"name": "Dental plaque" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Dental plaque" }, + + {"name": "Gingiva" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Gingiva" }, + + {"name": "Gingival crevicular fluids" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Gingival crevicular fluids" }, + + {"name": "Gingival sulcus" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Gingival sulcus" }, + + {"name": "Mucus" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Mucus" }, + + {"name": "Oral mucosa" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Oral mucosa" }, + + {"name": "Periodontal pockets" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Periodontal pockets" }, + + {"name": "Saliva" , "count": "2" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Saliva" }, + + {"name": "Salivary glands" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Salivary glands" }, + + {"name": "Subgingival plaque" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Subgingival plaque" }, + + {"name": "Supragingival plaque" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Supragingival plaque" }, + + {"name": "Tongue dorsum" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Tongue dorsum" }, + + {"name": "Tooth" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Tooth" }, + + {"name": "Unclassified" , "count": "122" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Pancreas" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Pancreas" , "children" : [ + {"name": "Pancreatic duct" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Pancreas&Biosample.Specific Ecosystem=Pancreatic duct" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Pancreas&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Small intestine" , "count": "200" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Small intestine" , "children" : [ + {"name": "Duodenum" , "count": "62" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Small intestine&Biosample.Specific Ecosystem=Duodenum" }, + + {"name": "Ileum" , "count": "64" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Small intestine&Biosample.Specific Ecosystem=Ileum" }, + + {"name": "Jejunum" , "count": "50" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Small intestine&Biosample.Specific Ecosystem=Jejunum" }, + + {"name": "Unclassified" , "count": "24" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Small intestine&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Stomach" , "count": "2184" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach" , "children" : [ + {"name": "Abomasum" , "count": "49" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Abomasum" }, + + {"name": "C1/Glandular saccules" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=C1/Glandular saccules" }, + + {"name": "C2" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=C2" }, + + {"name": "C3" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=C3" }, + + {"name": "Chyme" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Chyme" }, + + {"name": "Cud" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Cud" }, + + {"name": "Forestomach" , "count": "27" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Forestomach" }, + + {"name": "Gastric mucosa" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Gastric mucosa" }, + + {"name": "Glandular stomach" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Glandular stomach" }, + + {"name": "Omasum" , "count": "12" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Omasum" }, + + {"name": "Reticulum" , "count": "12" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Reticulum" }, + + {"name": "Rumen" , "count": "956" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Rumen" }, + + {"name": "Rumen fluid" , "count": "1097" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Rumen fluid" }, + + {"name": "Rumen mucosa" , "count": "6" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Rumen mucosa" }, + + {"name": "Rumen: Caudodorsal blind sac" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Rumen: Caudodorsal blind sac" }, + + {"name": "Rumen: Caudoventral blind sac" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Rumen: Caudoventral blind sac" }, + + {"name": "Rumen: Cranial sac" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Rumen: Cranial sac" }, + + {"name": "Rumen: Dorsal sac" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Rumen: Dorsal sac" }, + + {"name": "Rumen: Ventral sac" , "count": "3" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Rumen: Ventral sac" }, + + {"name": "Sacciform" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Sacciform" }, + + {"name": "Tubiform" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Tubiform" }, + + {"name": "Unclassified" , "count": "22" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Unclassified" , "count": "62" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "62" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Endocrine system" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Endocrine system" , "children" : [ + {"name": "Endocrine gland" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Endocrine system&Biosample.Ecosystem+Subtype=Endocrine gland" , "children" : [ + {"name": "Adrenal glands" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Endocrine system&Biosample.Ecosystem+Subtype=Endocrine gland&Biosample.Specific Ecosystem=Adrenal glands" }, + + {"name": "Hypophysis/Pituitary gland" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Endocrine system&Biosample.Ecosystem+Subtype=Endocrine gland&Biosample.Specific Ecosystem=Hypophysis/Pituitary gland" }, + + {"name": "Parathyroid" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Endocrine system&Biosample.Ecosystem+Subtype=Endocrine gland&Biosample.Specific Ecosystem=Parathyroid" }, + + {"name": "Pineal gland/Epiphysis cerebri" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Endocrine system&Biosample.Ecosystem+Subtype=Endocrine gland&Biosample.Specific Ecosystem=Pineal gland/Epiphysis cerebri" }, + + {"name": "Thymus" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Endocrine system&Biosample.Ecosystem+Subtype=Endocrine gland&Biosample.Specific Ecosystem=Thymus" }, + + {"name": "Thyroid" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Endocrine system&Biosample.Ecosystem+Subtype=Endocrine gland&Biosample.Specific Ecosystem=Thyroid" }] +}] +}, + + {"name": "Fetus" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Fetus" , "children" : [ + {"name": "Fetal tissue" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Fetal tissue" , "children" : [ + {"name": "Amniotic fluid" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Fetal tissue&Biosample.Specific Ecosystem=Amniotic fluid" }, + + {"name": "Amniotic sac" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Fetal tissue&Biosample.Specific Ecosystem=Amniotic sac" }, + + {"name": "Chorionic villi" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Fetal tissue&Biosample.Specific Ecosystem=Chorionic villi" }, + + {"name": "Placenta" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Fetal tissue&Biosample.Specific Ecosystem=Placenta" }, + + {"name": "Umbilical cord" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Fetal tissue&Biosample.Specific Ecosystem=Umbilical cord" }, + + {"name": "Umbilical cord blood" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Fetal tissue&Biosample.Specific Ecosystem=Umbilical cord blood" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Fetal tissue&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Integumentary system" , "count": "339" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Integumentary system" , "children" : [ + {"name": "Adipose tissue" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Adipose tissue" , "children" : [ + {"name": "Subcutaneous fat" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Adipose tissue&Biosample.Specific Ecosystem=Subcutaneous fat" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Adipose tissue&Biosample.Specific Ecosystem=Unclassified" }, + + {"name": "Visceral fat" , "count": "0" , 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fluid" }, + + {"name": "Unclassified" , "count": "73" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Lung&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Nasal cavity" , "count": "74" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity" , "children" : [ + {"name": "Anterior nares" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity&Biosample.Specific Ecosystem=Anterior nares" }, + + {"name": "Nasal discharge" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity&Biosample.Specific Ecosystem=Nasal discharge" }, + + {"name": "Posterior nares" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity&Biosample.Specific Ecosystem=Posterior nares" }, + + {"name": "Unclassified" , "count": "74" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Paranasal sinuses" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Paranasal sinuses" , "children" : [ + {"name": "Catarrh" , "count": "0" , "url": 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"search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Cartilage" , "children" : [ + {"name": "Elastic" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Cartilage&Biosample.Specific Ecosystem=Elastic" }, + + {"name": "Fibrocartilage" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Cartilage&Biosample.Specific Ecosystem=Fibrocartilage" }, + + {"name": "Hyaline" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Cartilage&Biosample.Specific Ecosystem=Hyaline" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Cartilage&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Joint capsule" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Joint capsule" , "children" : [ + {"name": "Synovial fluid" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Joint capsule&Biosample.Specific Ecosystem=Synovial fluid" }, + + {"name": "Synovium" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Joint capsule&Biosample.Specific Ecosystem=Synovium" }] +}] +}, + + {"name": "Tumor" , 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Ecosystem=Venous" }, + + {"name": "Whole blood" , "count": "52" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Circulatory system&Biosample.Ecosystem+Subtype=Blood&Biosample.Specific Ecosystem=Whole blood" }] +}, + + {"name": "Heart" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Circulatory system&Biosample.Ecosystem+Subtype=Heart" , "children" : [ + {"name": "Atria" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Circulatory system&Biosample.Ecosystem+Subtype=Heart&Biosample.Specific Ecosystem=Atria" }, + + {"name": "Cardiac skeleton" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Circulatory system&Biosample.Ecosystem+Subtype=Heart&Biosample.Specific Ecosystem=Cardiac skeleton" }, + + {"name": "Heart valve" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Circulatory system&Biosample.Ecosystem+Subtype=Heart&Biosample.Specific Ecosystem=Heart valve" }, + + {"name": "Heart wall" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Circulatory system&Biosample.Ecosystem+Subtype=Heart&Biosample.Specific Ecosystem=Heart wall" }, + + {"name": "Myocardial abscess" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Circulatory system&Biosample.Ecosystem+Subtype=Heart&Biosample.Specific Ecosystem=Myocardial abscess" }, + + {"name": "Septum" , "count": "0" , "url": 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tract&Biosample.Specific Ecosystem=Gallbladder: Bile" }, + + {"name": "Hepatic cysts" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Biliary tract&Biosample.Specific Ecosystem=Hepatic cysts" }, + + {"name": "Liver" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Biliary tract&Biosample.Specific Ecosystem=Liver" }] +}, + + {"name": "Esophagus" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Esophagus" , "children" : [ + {"name": "Esophageal ulcer" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Esophagus&Biosample.Specific Ecosystem=Esophageal ulcer" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Esophagus&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Large intestine" , "count": "40720" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Large intestine" , "children" : [ + {"name": "Anal canal" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Large intestine&Biosample.Specific Ecosystem=Anal canal" }, + + {"name": "Anal canal mucosa" , "count": "0" , "url": 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intestine&Biosample.Specific Ecosystem=Appendix abscess" }, + + {"name": "Ascending colon" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Large intestine&Biosample.Specific Ecosystem=Ascending colon" }, + + {"name": "Cecum" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Large intestine&Biosample.Specific Ecosystem=Cecum" }, + + {"name": "Colon mucosa" , "count": "22" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Large intestine&Biosample.Specific Ecosystem=Colon mucosa" }, + + {"name": "Descending colon" , "count": "1" , "url": 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intestine&Biosample.Specific Ecosystem=Rectal mucosa" }, + + {"name": "Rectum" , "count": "466" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Large intestine&Biosample.Specific Ecosystem=Rectum" }, + + {"name": "Sigmoid colon" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Large intestine&Biosample.Specific Ecosystem=Sigmoid colon" }, + + {"name": "Splenic flexure" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Large intestine&Biosample.Specific Ecosystem=Splenic flexure" }, + + {"name": "Transverse colon" , "count": "0" , "url": 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gastrointestinal tract&Biosample.Specific Ecosystem=Intestinal mucosa" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Lower gastrointestinal tract&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Oral cavity" , "count": "2429" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity" , "children" : [ + {"name": "Attached/Keratinized gingiva" , "count": "7" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Attached/Keratinized gingiva" }, + + {"name": "Buccal mucosa" , "count": "171" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Buccal mucosa" }, + + {"name": "Dental abscess" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Dental abscess" }, + + {"name": "Dental calculus" , "count": "2" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Dental calculus" }, + + {"name": "Dental plaque" , "count": "280" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Dental plaque" }, + + {"name": "Gingiva" , "count": "4" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Gingiva" }, + + {"name": "Gingival crevice/sulcus" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Gingival crevice/sulcus" }, + + {"name": "Gingival crevicular fluids" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Gingival crevicular fluids" }, + + {"name": "Hard palate" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Hard palate" }, + + {"name": "Mouth ulcer" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Mouth ulcer" }, + + {"name": "Mucus" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Mucus" }, + + {"name": "Oral mucosa" , "count": "8" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Oral mucosa" }, + + {"name": "Parotid abscess" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Parotid abscess" }, + + {"name": "Periodontal pockets" , "count": "3" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Periodontal pockets" }, + + {"name": "Saliva" , "count": "1226" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Saliva" }, + + {"name": "Salivary glands" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Salivary glands" }, + + {"name": "Salivary glands: Parotid glands" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Salivary glands: Parotid glands" }, + + {"name": "Subgingival plaque" , "count": "74" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Subgingival plaque" }, + + {"name": "Supragingival plaque" , "count": "171" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Supragingival plaque" }, + + {"name": "Tongue dorsum" , "count": "254" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Tongue dorsum" }, + + {"name": "Tooth" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Tooth" }, + + {"name": "Tooth: Cementum" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Tooth: Cementum" }, + + {"name": "Tooth: Dental pulp" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Tooth: Dental pulp" }, + + {"name": "Tooth: Dentin" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Tooth: Dentin" }, + + {"name": "Tooth: Enamel" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Tooth: Enamel" }, + + {"name": "Unclassified" , "count": "227" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Pancreas" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Pancreas" , "children" : [ + {"name": "Pancreatic duct" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Pancreas&Biosample.Specific Ecosystem=Pancreatic duct" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Pancreas&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Pharynx/Throat" , "count": "41" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Pharynx/Throat" , "children" : [ + {"name": "Oropharynx" , "count": "41" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Pharynx/Throat&Biosample.Specific Ecosystem=Oropharynx" }, + + {"name": "Peritonsillar abscess" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Pharynx/Throat&Biosample.Specific Ecosystem=Peritonsillar abscess" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Pharynx/Throat&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Small intestine" , "count": "4" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Small intestine" , "children" : [ + {"name": "Duodenal ulcer" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Small intestine&Biosample.Specific Ecosystem=Duodenal ulcer" }, + + {"name": "Duodenum" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Small intestine&Biosample.Specific Ecosystem=Duodenum" }, + + {"name": "Ileostomy effluent" , "count": "4" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Small intestine&Biosample.Specific Ecosystem=Ileostomy effluent" }, + + {"name": "Ileum" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Small intestine&Biosample.Specific Ecosystem=Ileum" }, + + {"name": "Intestinal mucosa" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Small intestine&Biosample.Specific Ecosystem=Intestinal mucosa" }, + + {"name": "Jejunum" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Small intestine&Biosample.Specific Ecosystem=Jejunum" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Small intestine&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Stomach" , "count": "25" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach" , "children" : [ + {"name": "Chyme" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Chyme" }, + + {"name": "Gastric mucosa" , "count": "25" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Gastric mucosa" }, + + {"name": "Gastric ulcer" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Gastric ulcer" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Stomach&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Endocrine system" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Endocrine system" , "children" : [ + {"name": "Endocrine gland" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Endocrine system&Biosample.Ecosystem+Subtype=Endocrine gland" , "children" : [ + {"name": "Adrenal glands" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Endocrine system&Biosample.Ecosystem+Subtype=Endocrine gland&Biosample.Specific Ecosystem=Adrenal glands" }, + + {"name": "Hypophysis/Pituitary gland" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Endocrine system&Biosample.Ecosystem+Subtype=Endocrine gland&Biosample.Specific Ecosystem=Hypophysis/Pituitary gland" }, + + {"name": "Parathyroid" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Endocrine system&Biosample.Ecosystem+Subtype=Endocrine gland&Biosample.Specific Ecosystem=Parathyroid" }, + + {"name": "Pineal gland/Epiphysis cerebri" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Endocrine system&Biosample.Ecosystem+Subtype=Endocrine gland&Biosample.Specific Ecosystem=Pineal gland/Epiphysis cerebri" }, + + {"name": "Thymus" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Endocrine system&Biosample.Ecosystem+Subtype=Endocrine gland&Biosample.Specific Ecosystem=Thymus" }, + + {"name": "Thyroid" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Endocrine system&Biosample.Ecosystem+Subtype=Endocrine gland&Biosample.Specific Ecosystem=Thyroid" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Endocrine system&Biosample.Ecosystem+Subtype=Endocrine gland&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Endocrine system&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Endocrine system&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Fetus" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Fetus" , "children" : [ + {"name": "Amniotic sac" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Amniotic sac" , "children" : [ + {"name": "Amniotic fluid" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Amniotic sac&Biosample.Specific Ecosystem=Amniotic fluid" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Amniotic sac&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Fetal tissue" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Fetal tissue" , "children" : [ + {"name": "Chorionic villi" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Fetal tissue&Biosample.Specific Ecosystem=Chorionic villi" }, + + {"name": "Placenta" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Fetal tissue&Biosample.Specific Ecosystem=Placenta" }, + + {"name": "Umbilical cord" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Fetal tissue&Biosample.Specific Ecosystem=Umbilical cord" }, + + {"name": "Umbilical cord blood" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Fetal tissue&Biosample.Specific Ecosystem=Umbilical cord blood" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Fetal tissue&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Fetus&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": 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Ecosystem=Unclassified" }, + + {"name": "Visceral fat" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Adipose tissue&Biosample.Specific Ecosystem=Visceral fat" }] +}, + + {"name": "Apocrine sweat glands" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Apocrine sweat glands" , "children" : [ + {"name": "Sweat" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Apocrine sweat glands&Biosample.Specific Ecosystem=Sweat" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: 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glands" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Ceruminous glands" , "children" : [ + {"name": "Cerumen/Earwax" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Ceruminous glands&Biosample.Specific Ecosystem=Cerumen/Earwax" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Ceruminous glands&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Eccrine sweat glands" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Eccrine sweat glands" , "children" : [ + {"name": "Sweat" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Eccrine sweat glands&Biosample.Specific Ecosystem=Sweat" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Eccrine sweat glands&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Hair" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Hair" , "children" : [ + {"name": "Hair roots" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Hair&Biosample.Specific Ecosystem=Hair roots" }, + + {"name": "Hair shaft" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Hair&Biosample.Specific Ecosystem=Hair shaft" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Hair&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Lacrimal apparatus" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Lacrimal apparatus" , "children" : [ + {"name": "Lacrimal canaliculus" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Lacrimal apparatus&Biosample.Specific Ecosystem=Lacrimal canaliculus" }, + + {"name": "Lacrimal fluids" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Lacrimal apparatus&Biosample.Specific Ecosystem=Lacrimal fluids" }, + + {"name": "Lacrimal glands" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Lacrimal apparatus&Biosample.Specific Ecosystem=Lacrimal glands" }, + + {"name": "Lacrimal sac" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Lacrimal apparatus&Biosample.Specific Ecosystem=Lacrimal sac" }, + + {"name": "Nasolacrimal canal" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Lacrimal apparatus&Biosample.Specific Ecosystem=Nasolacrimal canal" }, + + {"name": "Tears" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Lacrimal apparatus&Biosample.Specific Ecosystem=Tears" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Lacrimal apparatus&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Mammary gland" , "count": "36" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Mammary gland" , "children" : [ + {"name": "Breast abscess" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Mammary gland&Biosample.Specific Ecosystem=Breast abscess" }, + + {"name": "Breast cyst" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Mammary gland&Biosample.Specific Ecosystem=Breast cyst" }, + + {"name": "Discharge" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Mammary gland&Biosample.Specific Ecosystem=Discharge" }, + + {"name": "Milk" , "count": "36" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Mammary gland&Biosample.Specific Ecosystem=Milk" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Mammary gland&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Meibomian glands" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Meibomian glands" , "children" : [ + {"name": "Meibum" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Meibomian glands&Biosample.Specific Ecosystem=Meibum" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Meibomian glands&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Nails" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Nails" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Nails&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Sebaceous glands" , "count": "6" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Sebaceous glands" , "children" : [ + {"name": "Sebum" , "count": "6" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Sebaceous glands&Biosample.Specific Ecosystem=Sebum" }, + + {"name": "Stye" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Sebaceous glands&Biosample.Specific Ecosystem=Stye" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Sebaceous glands&Biosample.Specific Ecosystem=Unclassified" }] +}, 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system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Abscess: Pilonidal sinus" }, + + {"name": "Acne vulgaris" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Acne vulgaris" }, + + {"name": "Athlete's foot" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Athlete's foot" }, + + {"name": "Auricle/Pinna" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Auricle/Pinna" }, + + {"name": "Axilla/Armpit" , "count": "79" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Axilla/Armpit" }, + + {"name": "Cellulitis" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Cellulitis" }, + + {"name": "Cutaneous leishmaniasis" , "count": "20" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Cutaneous leishmaniasis" }, + + {"name": "Cuticle" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Cuticle" }, + + {"name": "Dermal papilla" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Dermal papilla" }, + + {"name": "Dermatitis" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Dermatitis" }, + + {"name": "Dermis" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Dermis" }, + + {"name": "Diabetic foot ulcer (DFU)" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Diabetic foot ulcer (DFU)" }, + + {"name": "Eczema" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Eczema" }, + + {"name": "Epidermis" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Epidermis" }, + + {"name": "Genital herpes" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Genital herpes" }, + + {"name": "Genital region" , "count": "2" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Genital region" }, + + {"name": "Hair follicle" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Hair follicle" }, + + {"name": "Herpes zoster/Shingles" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Herpes zoster/Shingles" }, + + {"name": "Hypodermis/Subcutis" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Hypodermis/Subcutis" }, + + {"name": "Lesion" , "count": "10" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Lesion" }, + + {"name": "Nose follicle" , "count": "26" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Nose follicle" }, + + {"name": "Oral herpes" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Oral herpes" }, + + {"name": "Perineum" , "count": "0" , "url": 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Ecosystem=Rosacea" }, + + {"name": "Scalp" , "count": "225" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Scalp" }, + + {"name": "Scalp: Dandruff" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Scalp: Dandruff" }, + + {"name": "Scalp: Non-dandruff" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Scalp: Non-dandruff" }, + + {"name": "Skin surface" , "count": "1076" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Skin surface" }, + + {"name": "Skin tissue" , "count": "7" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Skin tissue" }, + + {"name": "Ulcer" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Ulcer" }, + + {"name": "Umbilicus" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Umbilicus" }, + + {"name": "Unclassified" , "count": "1274" , "url": 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"search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymph duct" , "children" : [ + {"name": "Right" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymph duct&Biosample.Specific Ecosystem=Right" }, + + {"name": "Thoracic" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymph duct&Biosample.Specific Ecosystem=Thoracic" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymph duct&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Lymph nodes" , "count": "10" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymph nodes" , "children" : [ + {"name": "Abdomen nodes" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymph nodes&Biosample.Specific Ecosystem=Abdomen nodes" }, + + {"name": "Arm nodes" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymph nodes&Biosample.Specific Ecosystem=Arm nodes" }, + + {"name": "Armpit nodes" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymph nodes&Biosample.Specific Ecosystem=Armpit nodes" }, + + {"name": "Cervical/Neck nodes" , "count": "7" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymph nodes&Biosample.Specific Ecosystem=Cervical/Neck nodes" }, + + {"name": "Groin nodes" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymph nodes&Biosample.Specific Ecosystem=Groin nodes" }, + + {"name": "Head nodes" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymph nodes&Biosample.Specific Ecosystem=Head nodes" }, + + {"name": "Laryngopharyngeal" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymph nodes&Biosample.Specific Ecosystem=Laryngopharyngeal" }, + + {"name": "Leg nodes" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymph nodes&Biosample.Specific Ecosystem=Leg nodes" }, + + {"name": "Retropharyngeal" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymph nodes&Biosample.Specific Ecosystem=Retropharyngeal" }, + + {"name": "Thorax nodes" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymph nodes&Biosample.Specific Ecosystem=Thorax nodes" }, + + {"name": "Unclassified" , "count": "3" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymph nodes&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Lymphoid tissue" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymphoid tissue" , "children" : [ + {"name": "Lymphoid follicles" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymphoid tissue&Biosample.Specific Ecosystem=Lymphoid follicles" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Lymphoid tissue&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Peyer's patches" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Peyer's patches" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Peyer's patches&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Spleen" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Spleen" , "children" : [ + {"name": "Splenic aspirate" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Spleen&Biosample.Specific Ecosystem=Splenic aspirate" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Spleen&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Tertiary lymphoid organ" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Tertiary lymphoid organ" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Tertiary lymphoid organ&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Tonsils" , "count": "8" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Tonsils" , "children" : [ + {"name": "Adenoid/Pharyngeal" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Tonsils&Biosample.Specific Ecosystem=Adenoid/Pharyngeal" }, + + {"name": "Lingual" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Tonsils&Biosample.Specific Ecosystem=Lingual" }, + + {"name": "Palatine/Faucial" , "count": "8" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Tonsils&Biosample.Specific Ecosystem=Palatine/Faucial" }, + + {"name": "Tubal" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Tonsils&Biosample.Specific Ecosystem=Tubal" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Tonsils&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Lymphatic system&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Malignant tumor" , "count": "297" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor" , "children" : [ + {"name": "Carcinoid" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoid" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoid&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Carcinoma" , "count": "210" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoma" , "children" : [ + {"name": "Actinic keratosis" , "count": "5" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoma&Biosample.Specific Ecosystem=Actinic keratosis" }, + + {"name": "Basal cell carcinoma" , "count": "33" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoma&Biosample.Specific Ecosystem=Basal cell carcinoma" }, + + {"name": "Bowens disease/Squamous cell carcinoma in situ" , "count": "2" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoma&Biosample.Specific Ecosystem=Bowens disease/Squamous cell carcinoma in situ" }, + + {"name": "Breast cancer" , "count": "37" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoma&Biosample.Specific Ecosystem=Breast cancer" }, + + {"name": "Breast cancer: Ductal" , "count": "10" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoma&Biosample.Specific Ecosystem=Breast cancer: Ductal" }, + + {"name": "Breast cancer: Lobular" , "count": "10" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoma&Biosample.Specific Ecosystem=Breast cancer: Lobular" }, + + {"name": "Cervical cancer" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoma&Biosample.Specific Ecosystem=Cervical cancer" }, + + {"name": "Colon cancer" , "count": "40" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoma&Biosample.Specific Ecosystem=Colon cancer" }, + + {"name": "Gastric carcinoma" , "count": "2" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoma&Biosample.Specific Ecosystem=Gastric carcinoma" }, + + {"name": "Keratoacanthoma" , "count": "3" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoma&Biosample.Specific Ecosystem=Keratoacanthoma" }, + + {"name": "Oral cavity cancer" , "count": "9" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoma&Biosample.Specific Ecosystem=Oral cavity cancer" }, + + {"name": "Ovarian cancer" , "count": "5" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoma&Biosample.Specific Ecosystem=Ovarian cancer" }, + + {"name": "Squamous cell carcinoma" , "count": "23" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoma&Biosample.Specific Ecosystem=Squamous cell carcinoma" }, + + {"name": "Testicular cancer" , "count": "24" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoma&Biosample.Specific Ecosystem=Testicular cancer" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoma&Biosample.Specific Ecosystem=Unclassified" }, + + {"name": "Urothelial carcinoma/Transitional cell carcinoma (TCC)" , "count": "7" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Carcinoma&Biosample.Specific Ecosystem=Urothelial carcinoma/Transitional cell carcinoma (TCC)" }] +}, + + {"name": "Germ cell tumor" , "count": "5" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Germ cell tumor" , "children" : [ + {"name": "Ovarian" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Germ cell tumor&Biosample.Specific Ecosystem=Ovarian" }, + + {"name": "Testicular non-seminoma" , "count": "4" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Germ cell tumor&Biosample.Specific Ecosystem=Testicular non-seminoma" }, + + {"name": "Testicular seminoma" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Germ cell tumor&Biosample.Specific Ecosystem=Testicular seminoma" }] +}, + + {"name": "Lymphoma" , "count": "44" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Lymphoma" , "children" : [ + {"name": "Diffuse large B-cell lymphoma" , "count": "9" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Lymphoma&Biosample.Specific Ecosystem=Diffuse large B-cell lymphoma" }, + + {"name": "Lymphoblastic lymphoma" , "count": "2" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Lymphoma&Biosample.Specific Ecosystem=Lymphoblastic lymphoma" }, + + {"name": "Mycosis fungoides/Cutaneous T-cell lymphoma" , "count": "33" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Lymphoma&Biosample.Specific Ecosystem=Mycosis fungoides/Cutaneous T-cell lymphoma" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Lymphoma&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Melanoma" , "count": "30" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Melanoma" , "children" : [ + {"name": "Unclassified" , "count": "30" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Melanoma&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Mixed type" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Mixed type" , "children" : [ + {"name": "Carcinosarcoma" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Mixed type&Biosample.Specific Ecosystem=Carcinosarcoma" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Mixed type&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Myeloma" , "count": "8" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Myeloma" , "children" : [ + {"name": "Multiple myeloma" , "count": "8" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Myeloma&Biosample.Specific Ecosystem=Multiple myeloma" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Myeloma&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Sarcoma" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Sarcoma" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Sarcoma&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Malignant tumor&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Multisystem conditions" , "count": "146" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Multisystem conditions" , "children" : [ + {"name": "Arterial ulcer" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Multisystem conditions&Biosample.Ecosystem+Subtype=Arterial ulcer" , "children" : [ + {"name": "Lesion site" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Multisystem conditions&Biosample.Ecosystem+Subtype=Arterial ulcer&Biosample.Specific Ecosystem=Lesion site" }] +}, + + {"name": "Diabetic foot ulcer (DFU)" , "count": "99" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Multisystem conditions&Biosample.Ecosystem+Subtype=Diabetic foot ulcer (DFU)" , "children" : [ + {"name": "Lesion site" , "count": "99" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Multisystem conditions&Biosample.Ecosystem+Subtype=Diabetic foot ulcer (DFU)&Biosample.Specific Ecosystem=Lesion site" }] +}, + + {"name": "Necrotizing soft tissue infections (NSTI)" , "count": "47" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Multisystem conditions&Biosample.Ecosystem+Subtype=Necrotizing soft tissue infections (NSTI)" , "children" : [ + {"name": "Necrotizing lesion" , "count": "47" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Multisystem conditions&Biosample.Ecosystem+Subtype=Necrotizing soft tissue infections (NSTI)&Biosample.Specific Ecosystem=Necrotizing lesion" }] +}, + + {"name": "Soft tissues" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Multisystem conditions&Biosample.Ecosystem+Subtype=Soft tissues" , "children" : [ + {"name": "Abscess" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Multisystem conditions&Biosample.Ecosystem+Subtype=Soft tissues&Biosample.Specific Ecosystem=Abscess" }] +}, + + {"name": "Venous ulcer" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Multisystem conditions&Biosample.Ecosystem+Subtype=Venous ulcer" , "children" : [ + {"name": "Lesion site" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Multisystem conditions&Biosample.Ecosystem+Subtype=Venous ulcer&Biosample.Specific Ecosystem=Lesion site" }] +}] +}, + + {"name": "Muscular system" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Muscular system" , "children" : [ + {"name": "Skeletal muscle" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Muscular system&Biosample.Ecosystem+Subtype=Skeletal muscle" , "children" : [ + {"name": "Muscle abscess" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Muscular system&Biosample.Ecosystem+Subtype=Skeletal muscle&Biosample.Specific Ecosystem=Muscle abscess" }, + + {"name": "Unclassified" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Muscular system&Biosample.Ecosystem+Subtype=Skeletal muscle&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Smooth muscle" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Muscular system&Biosample.Ecosystem+Subtype=Smooth muscle" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Muscular system&Biosample.Ecosystem+Subtype=Smooth muscle&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Muscular system&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Muscular system&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Nervous system" , "count": "128" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Nervous system" , "children" : [ + {"name": "Brain" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Nervous system&Biosample.Ecosystem+Subtype=Brain" , "children" : [ + {"name": "Abscess" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Nervous system&Biosample.Ecosystem+Subtype=Brain&Biosample.Specific Ecosystem=Abscess" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Nervous system&Biosample.Ecosystem+Subtype=Brain&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Spinal cord" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Nervous system&Biosample.Ecosystem+Subtype=Spinal cord" , "children" : [ + {"name": "Abscess" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Nervous system&Biosample.Ecosystem+Subtype=Spinal cord&Biosample.Specific Ecosystem=Abscess" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Nervous system&Biosample.Ecosystem+Subtype=Spinal cord&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Subarachnoid space" , "count": "128" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Nervous system&Biosample.Ecosystem+Subtype=Subarachnoid space" , "children" : [ + {"name": "Cerebrospinal fluid" , "count": "128" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Nervous system&Biosample.Ecosystem+Subtype=Subarachnoid space&Biosample.Specific Ecosystem=Cerebrospinal fluid" }] +}, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Nervous system&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Nervous system&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Remains" , "count": "442" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains" , "children" : [ + {"name": "Decomposed body" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Decomposed body" , "children" : [ + {"name": "Bone" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Decomposed body&Biosample.Specific Ecosystem=Bone" }, + + {"name": "Intestine" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Decomposed body&Biosample.Specific Ecosystem=Intestine" }, + + {"name": "Skin" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Decomposed body&Biosample.Specific Ecosystem=Skin" }, + + {"name": "Soft tissues" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Decomposed body&Biosample.Specific Ecosystem=Soft tissues" }, + + {"name": "Soft tissues: Muscles" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Decomposed body&Biosample.Specific Ecosystem=Soft tissues: Muscles" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Decomposed body&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Fossilized remains" , "count": "119" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Fossilized remains" , "children" : [ + {"name": "Bone" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Fossilized remains&Biosample.Specific Ecosystem=Bone" }, + + {"name": "Dental calculus" , "count": "111" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Fossilized remains&Biosample.Specific Ecosystem=Dental calculus" }, + + {"name": "Dentin" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Fossilized remains&Biosample.Specific Ecosystem=Dentin" }, + + {"name": "Paleofeces" , "count": "8" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Fossilized remains&Biosample.Specific Ecosystem=Paleofeces" }, + + {"name": "Tooth" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Fossilized remains&Biosample.Specific Ecosystem=Tooth" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Fossilized remains&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Frozen remains" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Frozen remains" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Frozen remains&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Mummified remains" , "count": "35" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Mummified remains" , "children" : [ + {"name": "Colon mucosa" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Mummified remains&Biosample.Specific Ecosystem=Colon mucosa" }, + + {"name": "Gastric mucosa" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Mummified remains&Biosample.Specific Ecosystem=Gastric mucosa" }, + + {"name": "Large intestine" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Mummified remains&Biosample.Specific Ecosystem=Large intestine" }, + + {"name": "Large intestine content" , "count": "3" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Mummified remains&Biosample.Specific Ecosystem=Large intestine content" }, + + {"name": "Low gastrointestinal tract" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Mummified remains&Biosample.Specific Ecosystem=Low gastrointestinal tract" }, + + {"name": "Lungs" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Mummified remains&Biosample.Specific Ecosystem=Lungs" }, + + {"name": "Muscle tissue" , "count": "2" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Mummified remains&Biosample.Specific Ecosystem=Muscle tissue" }, + + {"name": "Small intestine" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Mummified remains&Biosample.Specific Ecosystem=Small intestine" }, + + {"name": "Small intestine content" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Mummified remains&Biosample.Specific Ecosystem=Small intestine content" }, + + {"name": "Small intestine mucosa" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Mummified remains&Biosample.Specific Ecosystem=Small intestine mucosa" }, + + {"name": "Stomach" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Mummified remains&Biosample.Specific Ecosystem=Stomach" }, + + {"name": "Stomach content" , "count": "28" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Mummified remains&Biosample.Specific Ecosystem=Stomach content" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Mummified remains&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Skeletonized remains" , "count": "288" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Skeletonized remains" , "children" : [ + {"name": "Bone" , "count": "8" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Skeletonized remains&Biosample.Specific Ecosystem=Bone" }, + + {"name": "Dental calculus" , "count": "210" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Skeletonized remains&Biosample.Specific Ecosystem=Dental calculus" }, + + {"name": "Dentin" , "count": "60" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Skeletonized remains&Biosample.Specific Ecosystem=Dentin" }, + + {"name": "Hair" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Skeletonized remains&Biosample.Specific Ecosystem=Hair" }, + + {"name": "Kidney stones" , "count": "4" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Skeletonized remains&Biosample.Specific Ecosystem=Kidney stones" }, + + {"name": "Tooth" , "count": "5" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Skeletonized remains&Biosample.Specific Ecosystem=Tooth" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Skeletonized remains&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Remains&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" 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}, + + {"name": "Unclassified" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Reproductive system&Biosample.Ecosystem+Subtype=External genitalia/Vulva&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "External organs" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Reproductive system&Biosample.Ecosystem+Subtype=External organs" , "children" : [ + {"name": "Genital ulcer" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Reproductive system&Biosample.Ecosystem+Subtype=External organs&Biosample.Specific Ecosystem=Genital ulcer" }, + + {"name": "Penis" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Reproductive 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glands fluid" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Reproductive system&Biosample.Ecosystem+Subtype=Seminal glands&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Unclassified" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Reproductive system&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Reproductive system&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Uterus" , "count": "127" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Reproductive system&Biosample.Ecosystem+Subtype=Uterus" , "children" : [ + {"name": "Cervix" , "count": "127" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Reproductive system&Biosample.Ecosystem+Subtype=Uterus&Biosample.Specific Ecosystem=Cervix" }, + + {"name": "Endometrium" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Reproductive system&Biosample.Ecosystem+Subtype=Uterus&Biosample.Specific Ecosystem=Endometrium" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Reproductive system&Biosample.Ecosystem+Subtype=Uterus&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Vagina" , "count": "278" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Reproductive system&Biosample.Ecosystem+Subtype=Vagina" , "children" : [ + {"name": "Anterior fornix" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Reproductive system&Biosample.Ecosystem+Subtype=Vagina&Biosample.Specific Ecosystem=Anterior fornix" }, + + {"name": "Bartholin abscess" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Reproductive system&Biosample.Ecosystem+Subtype=Vagina&Biosample.Specific Ecosystem=Bartholin abscess" }, + + {"name": "Introitus" , "count": "22" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Reproductive system&Biosample.Ecosystem+Subtype=Vagina&Biosample.Specific Ecosystem=Introitus" }, + + {"name": "Lateral fornices" , "count": "0" , "url": 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Ecosystem=Unclassified" }] +}, + + {"name": "Vas deferens" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Reproductive system&Biosample.Ecosystem+Subtype=Vas deferens" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Reproductive system&Biosample.Ecosystem+Subtype=Vas deferens&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Respiratory system" , "count": "1784" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system" , "children" : [ + {"name": "Bronchi" , "count": "130" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Bronchi" , "children" : [ + {"name": "Bronchial epithelial cells" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Bronchi&Biosample.Specific Ecosystem=Bronchial epithelial cells" }, + + {"name": "Primary" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Bronchi&Biosample.Specific Ecosystem=Primary" }, + + {"name": "Secondary" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Bronchi&Biosample.Specific Ecosystem=Secondary" }, + + {"name": "Tertiary" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Bronchi&Biosample.Specific Ecosystem=Tertiary" }, + + {"name": "Unclassified" , "count": "130" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Bronchi&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Diaphragm" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Diaphragm" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Diaphragm&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Epithelial lining fluid" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Epithelial lining fluid" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Epithelial lining fluid&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Lung" , "count": "443" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Lung" , "children" : [ + {"name": "Alveoli" , "count": "148" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Lung&Biosample.Specific Ecosystem=Alveoli" }, + + {"name": "Bronchioles" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Lung&Biosample.Specific Ecosystem=Bronchioles" }, + + {"name": "Inferior lobe" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Lung&Biosample.Specific Ecosystem=Inferior lobe" }, + + {"name": "Middle lobe" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Lung&Biosample.Specific Ecosystem=Middle lobe" }, + + {"name": "Pulmonary fluid" , "count": "41" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Lung&Biosample.Specific Ecosystem=Pulmonary fluid" }, + + {"name": "Superior lobe" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Lung&Biosample.Specific Ecosystem=Superior lobe" }, + + {"name": "Unclassified" , "count": "254" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Lung&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Nasal cavity" , "count": "136" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity" , "children" : [ + {"name": "Abscess" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity&Biosample.Specific Ecosystem=Abscess" }, + + {"name": "Anterior nares" , "count": "129" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity&Biosample.Specific Ecosystem=Anterior nares" }, + + {"name": "Nasal discharge" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity&Biosample.Specific Ecosystem=Nasal discharge" }, + + {"name": "Nasal mucosa" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity&Biosample.Specific Ecosystem=Nasal mucosa" }, + + {"name": "Paranasal sinuses" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity&Biosample.Specific Ecosystem=Paranasal sinuses" }, + + {"name": "Paranasal sinuses: Catarrh" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity&Biosample.Specific Ecosystem=Paranasal sinuses: Catarrh" }, + + {"name": "Paranasal sinuses: Ethmoiddal" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity&Biosample.Specific Ecosystem=Paranasal sinuses: Ethmoiddal" }, + + {"name": "Paranasal sinuses: Frontal" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity&Biosample.Specific Ecosystem=Paranasal sinuses: Frontal" }, + + {"name": "Paranasal sinuses: Maxillary" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity&Biosample.Specific Ecosystem=Paranasal sinuses: Maxillary" }, + + {"name": "Paranasal sinuses: Sphenoidal" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity&Biosample.Specific Ecosystem=Paranasal sinuses: Sphenoidal" }, + + {"name": "Posterior nares" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity&Biosample.Specific Ecosystem=Posterior nares" }, + + {"name": "Sinus cyst" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity&Biosample.Specific Ecosystem=Sinus cyst" }, + + {"name": "Unclassified" , "count": "7" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Nasal cavity&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Pharynx/Throat" , "count": "718" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Pharynx/Throat" , "children" : [ + {"name": "Laryngopharynx" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Pharynx/Throat&Biosample.Specific Ecosystem=Laryngopharynx" }, + + {"name": "Nasopharynx" , "count": "640" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Pharynx/Throat&Biosample.Specific Ecosystem=Nasopharynx" }, + + {"name": "Unclassified" , "count": "78" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Pharynx/Throat&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Pleural space/cavity" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Pleural space/cavity" , "children" : [ + {"name": "Empyema drain" , "count": "0" , 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Ecosystem=Skull" }, + + {"name": "Spongy bone" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Bone&Biosample.Specific Ecosystem=Spongy bone" }, + + {"name": "Unclassified" , "count": "97" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Bone&Biosample.Specific Ecosystem=Unclassified" }, + + {"name": "Vertebra" , "count": "2" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Bone&Biosample.Specific Ecosystem=Vertebra" }] +}, + + {"name": "Cartilage" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Cartilage" , "children" : [ + {"name": "Elastic" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Cartilage&Biosample.Specific Ecosystem=Elastic" }, + + {"name": "Fibrocartilage" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Cartilage&Biosample.Specific Ecosystem=Fibrocartilage" }, + + {"name": "Hyaline" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Cartilage&Biosample.Specific Ecosystem=Hyaline" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Cartilage&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Joint capsule" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Joint capsule" , "children" : [ + {"name": "Abscess" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Joint capsule&Biosample.Specific Ecosystem=Abscess" }, + + {"name": "Beaker's/Popliteal cyst" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Joint capsule&Biosample.Specific Ecosystem=Beaker's/Popliteal cyst" }, + + {"name": "Synovial fluid" , "count": "0" , "url": 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system&Biosample.Ecosystem+Subtype=Periprosthetic joint&Biosample.Specific Ecosystem=Sonicate fluid" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Periprosthetic joint&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Periprosthetic joint: Hip" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Periprosthetic joint: Hip" , "children" : [ + {"name": "Sonicate fluid" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Periprosthetic joint: Hip&Biosample.Specific Ecosystem=Sonicate fluid" }, + + {"name": "Unclassified" , "count": "0" , "url": 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system&Biosample.Ecosystem+Subtype=Periprosthetic joint: Knee&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Thoracic cavity" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Thoracic cavity" , "children" : [ + {"name": "Intrathoracic space" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Thoracic cavity&Biosample.Ecosystem+Subtype=Intrathoracic space" , "children" : [ + {"name": "Thorax drainage" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Thoracic cavity&Biosample.Ecosystem+Subtype=Intrathoracic space&Biosample.Specific Ecosystem=Thorax drainage" }] +}] +}, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Unclassified&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Unclassified&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Urinary system" , "count": "215" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Urinary system" , "children" : [ + {"name": "Kidney" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Urinary system&Biosample.Ecosystem+Subtype=Kidney" , "children" : [ + {"name": "Kidney abscess" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Urinary system&Biosample.Ecosystem+Subtype=Kidney&Biosample.Specific Ecosystem=Kidney abscess" }, + + {"name": "Kidney stones" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Urinary system&Biosample.Ecosystem+Subtype=Kidney&Biosample.Specific Ecosystem=Kidney stones" }, + + {"name": "Renal cyst" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Urinary system&Biosample.Ecosystem+Subtype=Kidney&Biosample.Specific Ecosystem=Renal cyst" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Urinary system&Biosample.Ecosystem+Subtype=Kidney&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Urinary system&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Urinary system&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Ureter" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Urinary system&Biosample.Ecosystem+Subtype=Ureter" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Urinary system&Biosample.Ecosystem+Subtype=Ureter&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Urethra" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Urinary system&Biosample.Ecosystem+Subtype=Urethra" , "children" : [ + {"name": "Discharge" , "count": "0" , "url": 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{"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Urinary system&Biosample.Ecosystem+Subtype=Urinary bladder&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Urine" , "count": "215" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Urinary system&Biosample.Ecosystem+Subtype=Urine" , "children" : [ + {"name": "Unclassified" , "count": "215" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Urinary system&Biosample.Ecosystem+Subtype=Urine&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Visual system" , "count": "8" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Visual system" , "children" : [ + {"name": "Canthus" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Visual system&Biosample.Ecosystem+Subtype=Canthus" , "children" : [ + {"name": "Inner" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Visual system&Biosample.Ecosystem+Subtype=Canthus&Biosample.Specific Ecosystem=Inner" }, + + {"name": "Outer" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Visual system&Biosample.Ecosystem+Subtype=Canthus&Biosample.Specific Ecosystem=Outer" }, + + {"name": "Unclassified" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Mammals: Human&Biosample.Ecosystem+Type=Visual system&Biosample.Ecosystem+Subtype=Canthus&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Conjunctiva" , "count": "0" , "url": 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Ecosystem=Leaf surface biofilm" }, + + {"name": "Pitcher" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Phyllosphere&Biosample.Ecosystem+Subtype=Phylloplane/Leaf&Biosample.Specific Ecosystem=Pitcher" }, + + {"name": "Pitcher fluid" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Phyllosphere&Biosample.Ecosystem+Subtype=Phylloplane/Leaf&Biosample.Specific Ecosystem=Pitcher fluid" }, + + {"name": "Unclassified" , "count": "3081" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Phyllosphere&Biosample.Ecosystem+Subtype=Phylloplane/Leaf&Biosample.Specific Ecosystem=Unclassified" }, + + {"name": "Xylem vessels" , "count": "0" , "url": 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{"name": "Unclassified" , "count": "105" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Phyllosphere&Biosample.Ecosystem+Subtype=Phylloplane/Leaf surface&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Stem" , "count": "26" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Phyllosphere&Biosample.Ecosystem+Subtype=Stem" , "children" : [ + {"name": "Unclassified" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Phyllosphere&Biosample.Ecosystem+Subtype=Stem&Biosample.Specific Ecosystem=Unclassified" }, + + {"name": "Wood decay" , "count": "13" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Plants&Biosample.Ecosystem+Type=Phyllosphere&Biosample.Ecosystem+Subtype=Stem&Biosample.Specific Ecosystem=Wood decay" }, + + {"name": 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"search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Protists&Biosample.Ecosystem+Type=Oomycetes&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Protists&Biosample.Ecosystem+Type=Oomycetes&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Unclassified" , "count": "38" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Protists&Biosample.Ecosystem+Type=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "38" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Protists&Biosample.Ecosystem+Type=Unclassified&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "38" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Protists&Biosample.Ecosystem+Type=Unclassified&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}] +}, + + {"name": "Protozoa" , "count": "7" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Protozoa" , "children" : [ + {"name": "Oxymonads" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Protozoa&Biosample.Ecosystem+Type=Oxymonads" , "children" : [ + {"name": "Unclassified" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Protozoa&Biosample.Ecosystem+Type=Oxymonads&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Protozoa&Biosample.Ecosystem+Type=Oxymonads&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Sporozoa" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Protozoa&Biosample.Ecosystem+Type=Sporozoa" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Protozoa&Biosample.Ecosystem+Type=Sporozoa&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Protozoa&Biosample.Ecosystem+Type=Sporozoa&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Unclassified" , "count": "6" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Protozoa&Biosample.Ecosystem+Type=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "6" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Protozoa&Biosample.Ecosystem+Type=Unclassified&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "6" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Protozoa&Biosample.Ecosystem+Type=Unclassified&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}] +}, + + {"name": "Reptilia" , "count": "250" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia" , "children" : [ + {"name": "Circulatory system" , "count": "5" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Circulatory system" , "children" : [ + {"name": "Heart" , "count": "5" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Circulatory system&Biosample.Ecosystem+Subtype=Heart" , "children" : [ + {"name": "Unclassified" , "count": "5" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Circulatory system&Biosample.Ecosystem+Subtype=Heart&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Digestive system" , "count": "155" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Digestive system" , "children" : [ + {"name": "Biliary tract" , "count": "13" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Biliary tract" , "children" : [ + {"name": "Liver" , "count": "13" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Biliary tract&Biosample.Specific Ecosystem=Liver" }] +}, + + {"name": "Intestine" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Intestine" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Intestine&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Large intestine" , "count": "75" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Large intestine" , "children" : [ + {"name": "Fecal" , "count": "75" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Large intestine&Biosample.Specific Ecosystem=Fecal" }, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Large intestine&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Oral cavity" , "count": "55" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity" , "children" : [ + {"name": "Saliva" , "count": "55" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Oral cavity&Biosample.Specific Ecosystem=Saliva" }] +}, + + {"name": "Unclassified" , "count": "12" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "12" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Digestive system&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Integumentary system" , "count": "62" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Integumentary system" , "children" : [ + {"name": "Skin" , "count": "62" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin" , "children" : [ + {"name": "Unclassified" , "count": "62" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Integumentary system&Biosample.Ecosystem+Subtype=Skin&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Nervous system" , "count": "6" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Nervous system" , "children" : [ + {"name": "Brain" , "count": "6" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Nervous system&Biosample.Ecosystem+Subtype=Brain" , "children" : [ + {"name": "Unclassified" , "count": "6" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Nervous system&Biosample.Ecosystem+Subtype=Brain&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Respiratory system" , "count": "16" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Respiratory system" , "children" : [ + {"name": "Lung" , "count": "9" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Lung" , "children" : [ + {"name": "Unclassified" , "count": "9" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Lung&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Trachea" , "count": "7" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Trachea" , "children" : [ + {"name": "Unclassified" , "count": "7" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Trachea&Biosample.Specific Ecosystem=Unclassified" }] +}, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Respiratory system&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Skeletal system" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Skeletal system" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Skeletal system&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Unclassified&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Unclassified&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Urinary system" , "count": "6" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Urinary system" , "children" : [ + {"name": "Kidney" , "count": "6" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Urinary system&Biosample.Ecosystem+Subtype=Kidney" , "children" : [ + {"name": "Unclassified" , "count": "6" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Reptilia&Biosample.Ecosystem+Type=Urinary system&Biosample.Ecosystem+Subtype=Kidney&Biosample.Specific Ecosystem=Unclassified" }] +}] +}] +}, + + {"name": "Tunicates" , "count": "11" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Tunicates" , "children" : [ + {"name": "Ascidians" , "count": "10" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Tunicates&Biosample.Ecosystem+Type=Ascidians" , "children" : [ + {"name": "Unclassified" , "count": "10" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Tunicates&Biosample.Ecosystem+Type=Ascidians&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "10" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Tunicates&Biosample.Ecosystem+Type=Ascidians&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}, + + {"name": "Unclassified" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Tunicates&Biosample.Ecosystem+Type=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Tunicates&Biosample.Ecosystem+Type=Unclassified&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "1" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Tunicates&Biosample.Ecosystem+Type=Unclassified&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}] +}, + + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Unclassified&Biosample.Ecosystem+Type=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Unclassified&Biosample.Ecosystem+Type=Unclassified&Biosample.Ecosystem+Subtype=Unclassified" , "children" : [ + {"name": "Unclassified" , "count": "0" , "url": "search?Biosample.Ecosystem=Host-associated&Biosample.Ecosystem+Category=Unclassified&Biosample.Ecosystem+Type=Unclassified&Biosample.Ecosystem+Subtype=Unclassified&Biosample.Specific Ecosystem=Unclassified" }] +}] +}] +}] +} + + ] +} diff --git a/pyproject.toml b/pyproject.toml index 3a9d0545..1dbb58cf 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -64,6 +64,7 @@ build-backend = "poetry_dynamic_versioning.backend" docs = ["linkml", "mkdocs-material"] [tool.poetry.scripts] -oak-tree-to-pv-list = "src.nmdc_submission_schema.datamodel.oak_tree_to_pv_list:main" -dh-json2linkml = 'src.nmdc_submission_schema.datamodel.dh_json2linkml:update_json' -linkml-json2dh = 'src.nmdc_submission_schema.datamodel.linkml_json2dh:extract_lists' +oak-tree-to-pv-list = "nmdc_submission_schema.datamodel.oak_tree_to_pv_list:main" +dh-json2linkml = 'nmdc_submission_schema.datamodel.dh_json2linkml:update_json' +linkml-json2dh = 'nmdc_submission_schema.datamodel.linkml_json2dh:extract_lists' +inject-gold-pathway-terms = 'nmdc_submission_schema.datamodel.gold:main' diff --git a/src/nmdc_submission_schema/datamodel/gold.py b/src/nmdc_submission_schema/datamodel/gold.py new file mode 100644 index 00000000..91054f87 --- /dev/null +++ b/src/nmdc_submission_schema/datamodel/gold.py @@ -0,0 +1,76 @@ +import json +from collections import defaultdict +from enum import Enum +from pathlib import Path +from typing import Dict, Set, Iterable, Optional + +import click +from linkml_runtime import SchemaView +from linkml_runtime.dumpers import yaml_dumper +from linkml_runtime.linkml_model import EnumDefinition, PermissibleValue, SchemaDefinition +from linkml_runtime.loaders import yaml_loader + + +class PathwayLevel(Enum): + ecosystem = 'Ecosystem' + ecosystem_category = 'EcosystemCategory' + ecosystem_type = 'EcosystemType' + ecosystem_subtype = 'EcosystemSubtype' + specific_ecosystem = 'SpecificEcosystem' + + +class GoldTermSet: + + def __init__(self, *, schema_enum_suffix: str = '', include: Optional[Dict[PathwayLevel, Iterable[str]]] = None): + self.schema_enum_suffix: str = schema_enum_suffix + self.terms: Dict[PathwayLevel, Set[str]] = defaultdict(set) + self.include: Dict[PathwayLevel, Iterable[str]] = include if include is not None else {} + + +def inject_gold_pathway_terms(gold_ecosystem_tree_path: Path, input_schema_path: SchemaDefinition) -> SchemaDefinition: + """Inject gold pathway terms into the schema.""" + with open(gold_ecosystem_tree_path) as f: + gold_ecosystem_tree = json.load(f) + + levels = list(PathwayLevel) + all_terms = GoldTermSet() + soil_terms = GoldTermSet(schema_enum_suffix='ForSoil', include={ + PathwayLevel.ecosystem: ['Environmental'], + PathwayLevel.ecosystem_category: ['Terrestrial'], + PathwayLevel.ecosystem_type: ['Soil'], + }) + term_sets = [all_terms, soil_terms] + + def _add_term(term_set, term, level_index): + level = levels[level_index] + if term_set.include.get(level) and term['name'] not in term_set.include[level]: + return + term_set.terms[level].add(term['name']) + for child in term.get('children', []): + _add_term(term_set, child, level_index + 1) + + for term_set in term_sets: + for ecosystem in gold_ecosystem_tree['children']: + _add_term(term_set, ecosystem, level_index=0) + + schemaview = SchemaView(input_schema_path) + + for term_set in term_sets: + for level in levels: + pvs = [PermissibleValue(text=term) for term in term_set.terms[level]] + schemaview.add_enum(EnumDefinition( + name=level.value + term_set.schema_enum_suffix + 'Enum', + permissible_values=pvs + )) + + return schemaview.schema + +@click.command() +@click.option('--gold-ecosystem-tree-path', '-g', type=click.Path(exists=True), + help='Path to the gold ecosystem tree.') +@click.option('--input-file', '-i', type=click.File('r'), default="-") +@click.option('--output-file', '-o', type=click.File('w'), default="-") +def main(gold_ecosystem_tree_path, input_file, output_file): + schema = yaml_loader.loads(input_file.read(), SchemaDefinition) + output = inject_gold_pathway_terms(Path(gold_ecosystem_tree_path), schema) + print(yaml_dumper.dumps(output), file=output_file) From 69ee3915520faa03e4432a0f1f8ba052058dcd93 Mon Sep 17 00:00:00 2001 From: Patrick Kalita Date: Thu, 18 Jan 2024 14:50:52 -0800 Subject: [PATCH 3/5] Remove hardcoded enums and update ranges with new enum names --- schemasheets/tsv_in/enums.tsv | 53 ------------------- .../tsv_in/modifications_long.tsv | 25 ++++----- 2 files changed, 10 insertions(+), 68 deletions(-) diff --git a/schemasheets/tsv_in/enums.tsv b/schemasheets/tsv_in/enums.tsv index b02256da..edb8f6cb 100644 --- a/schemasheets/tsv_in/enums.tsv +++ b/schemasheets/tsv_in/enums.tsv @@ -27,34 +27,6 @@ DnaSampleFormatEnum RNAStable placeholder PV descr DnaSampleFormatEnum TE placeholder PV descr DnaSampleFormatEnum Water placeholder PV descr DnaSampleFormatEnum placeholder enum descr -EcosystemCategoryEnum Terrestrial placeholder PV descr https://github.com/microbiomedata/sheets_and_friends/issues/22 -EcosystemCategoryEnum placeholder enum descr -EcosystemEnum Environmental placeholder PV descr -EcosystemEnum placeholder enum descr -EcosystemSubtypeEnum Biocrust placeholder PV descr -EcosystemSubtypeEnum Biofilm placeholder PV descr -EcosystemSubtypeEnum Bulk soil placeholder PV descr -EcosystemSubtypeEnum Clay placeholder PV descr -EcosystemSubtypeEnum Floodplain placeholder PV descr -EcosystemSubtypeEnum Fossil placeholder PV descr -EcosystemSubtypeEnum Glacier placeholder PV descr -EcosystemSubtypeEnum Loam placeholder PV descr -EcosystemSubtypeEnum Mineral horizon placeholder PV descr -EcosystemSubtypeEnum Nature reserve placeholder PV descr -EcosystemSubtypeEnum Organic layer placeholder PV descr -EcosystemSubtypeEnum Paddy field/soil placeholder PV descr -EcosystemSubtypeEnum Pasture placeholder PV descr -EcosystemSubtypeEnum Peat placeholder PV descr -EcosystemSubtypeEnum Ranch placeholder PV descr -EcosystemSubtypeEnum Sand placeholder PV descr -EcosystemSubtypeEnum Silt placeholder PV descr -EcosystemSubtypeEnum Soil crust placeholder PV descr -EcosystemSubtypeEnum Unclassified placeholder PV descr -EcosystemSubtypeEnum Watershed placeholder PV descr -EcosystemSubtypeEnum Wetlands placeholder PV descr -EcosystemSubtypeEnum placeholder enum descr -EcosystemTypeEnum Soil placeholder PV descr -EcosystemTypeEnum placeholder enum descr EnvPackageEnum soil placeholder PV descr I don't think this is a MIxS term anymore, so it make sense to define it here EnvPackageEnum placeholder enum descr GrowthFacilEnum experimental_garden placeholder PV descr growth_facility https://genomicsstandardsconsortium.github.io/mixs/growth_facil/ string range according to MIxS @@ -89,31 +61,6 @@ RnaSampleFormatEnum placeholder enum descr SampleTypeEnum soil placeholder PV descr SampleTypeEnum water_extract_soil placeholder PV descr SampleTypeEnum placeholder enum descr -SpecificEcosystemEnum Agricultural placeholder PV descr -SpecificEcosystemEnum Agricultural land placeholder PV descr -SpecificEcosystemEnum Agricultural soil placeholder PV descr -SpecificEcosystemEnum Alpine placeholder PV descr -SpecificEcosystemEnum Bog placeholder PV descr -SpecificEcosystemEnum Boreal forest placeholder PV descr -SpecificEcosystemEnum Contaminated placeholder PV descr -SpecificEcosystemEnum Desert placeholder PV descr -SpecificEcosystemEnum Farm placeholder PV descr -SpecificEcosystemEnum Forest soil placeholder PV descr -SpecificEcosystemEnum Forest Soil placeholder PV descr -SpecificEcosystemEnum Grasslands placeholder PV descr -SpecificEcosystemEnum Meadow placeholder PV descr -SpecificEcosystemEnum Mine placeholder PV descr -SpecificEcosystemEnum Mine drainage placeholder PV descr -SpecificEcosystemEnum Oil-contaminated placeholder PV descr -SpecificEcosystemEnum Orchard soil placeholder PV descr -SpecificEcosystemEnum Permafrost placeholder PV descr -SpecificEcosystemEnum Riparian soil placeholder PV descr -SpecificEcosystemEnum River placeholder PV descr -SpecificEcosystemEnum Shrubland placeholder PV descr -SpecificEcosystemEnum Tropical rainforest placeholder PV descr -SpecificEcosystemEnum Unclassified placeholder PV descr -SpecificEcosystemEnum Uranium contaminated placeholder PV descr -SpecificEcosystemEnum placeholder enum descr StoreCondEnum fresh placeholder PV descr storage_condt see samp_store_dur, samp_store_loc, samp_store_temp and store_cond (which takes a string range according to mixs-source). StoreCondEnum frozen placeholder PV descr StoreCondEnum lyophilized placeholder PV descr diff --git a/sheets_and_friends/tsv_in/modifications_long.tsv b/sheets_and_friends/tsv_in/modifications_long.tsv index 579cc7e3..a2f79c3f 100644 --- a/sheets_and_friends/tsv_in/modifications_long.tsv +++ b/sheets_and_friends/tsv_in/modifications_long.tsv @@ -55,21 +55,17 @@ JgiMgInterface dna_seq_project_name replace_attribute required true JgiMgInterface dna_seq_project_pi replace_attribute required true JgiMgInterface dna_volume replace_attribute required true JgiMtInterface dnase_rna replace_attribute required true -AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface ecosystem add_attribute notes range: string or EcosystemEnum? The enum could be dynamic or might be soil biased. -SoilInterface ecosystem replace_attribute range EcosystemEnum -AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|WastewaterSludgeInterface ecosystem replace_attribute range string +SoilInterface ecosystem replace_attribute range EcosystemForSoilEnum +AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|WastewaterSludgeInterface ecosystem replace_attribute range EcosystemEnum AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface ecosystem replace_attribute recommended true -AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface ecosystem_category add_attribute notes string or EcosystemCategoryEnum range? -SoilInterface ecosystem_category replace_attribute range EcosystemCategoryEnum -AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|WastewaterSludgeInterface ecosystem_category replace_attribute range string +SoilInterface ecosystem_category replace_attribute range EcosystemCategoryForSoilEnum +AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|WastewaterSludgeInterface ecosystem_category replace_attribute range EcosystemCategoryEnum AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface ecosystem_category replace_attribute recommended true -AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface ecosystem_subtype add_attribute notes string or EcosystemSubtypeEnum range? -SoilInterface ecosystem_subtype replace_attribute range EcosystemSubtypeEnum -AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|WastewaterSludgeInterface ecosystem_subtype replace_attribute range string +SoilInterface ecosystem_subtype replace_attribute range EcosystemSubtypeForSoilEnum +AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|WastewaterSludgeInterface ecosystem_subtype replace_attribute range EcosystemSubtypeEnum AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface ecosystem_subtype replace_attribute recommended true -AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface ecosystem_type add_attribute notes string or EcosystemTypeEnum range? -SoilInterface ecosystem_type replace_attribute range EcosystemTypeEnum -AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|WastewaterSludgeInterface ecosystem_type replace_attribute range string +SoilInterface ecosystem_type replace_attribute range EcosystemTypeForSoilEnum +AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|WastewaterSludgeInterface ecosystem_type replace_attribute range EcosystemTypeEnum AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface ecosystem_type replace_attribute recommended true AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface elev overwrite_examples examples 225| 0|1250 AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface elev replace_attribute range float @@ -199,9 +195,8 @@ DhMultiviewCommonColumnsMixin source_mat_id overwrite_examples examples IGSN:A DhMultiviewCommonColumnsMixin source_mat_id add_attribute notes The source material IS the Globally Unique ID DhMultiviewCommonColumnsMixin source_mat_id replace_attribute string_serialization {text}:{text} DhMultiviewCommonColumnsMixin source_mat_id add_attribute todos Currently, the comments say to use UUIDs. However, if we implement assigning NMDC identifiers with the minter we dont need to require a GUID. It can be an optional field to fill out only if they already have a resolvable ID. -AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface specific_ecosystem add_attribute notes string or SpecificEcosystemEnum range? -SoilInterface specific_ecosystem replace_attribute range SpecificEcosystemEnum -AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|WastewaterSludgeInterface specific_ecosystem replace_attribute range string +SoilInterface specific_ecosystem replace_attribute range SpecificEcosystemForSoilEnum +AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|WastewaterSludgeInterface specific_ecosystem replace_attribute range SpecificEcosystemEnum AirInterface|BiofilmInterface|BuiltEnvInterface|HcrCoresInterface|HcrFluidsSwabsInterface|HostAssociatedInterface|MiscEnvsInterface|PlantAssociatedInterface|SedimentInterface|SoilInterface|WastewaterSludgeInterface|WaterInterface specific_ecosystem replace_attribute recommended true SoilInterface store_cond replace_attribute description Explain how the soil sample is stored (fresh/frozen/other). SoilInterface store_cond replace_attribute range StoreCondEnum From e445c849b13b487ef52aa70396c1f49d7eb2740e Mon Sep 17 00:00:00 2001 From: Patrick Kalita Date: Thu, 18 Jan 2024 14:58:35 -0800 Subject: [PATCH 4/5] Add enum permissible values in alphabetical order --- src/nmdc_submission_schema/datamodel/gold.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/nmdc_submission_schema/datamodel/gold.py b/src/nmdc_submission_schema/datamodel/gold.py index 91054f87..60a07566 100644 --- a/src/nmdc_submission_schema/datamodel/gold.py +++ b/src/nmdc_submission_schema/datamodel/gold.py @@ -57,7 +57,7 @@ def _add_term(term_set, term, level_index): for term_set in term_sets: for level in levels: - pvs = [PermissibleValue(text=term) for term in term_set.terms[level]] + pvs = [PermissibleValue(text=term) for term in sorted(term_set.terms[level])] schemaview.add_enum(EnumDefinition( name=level.value + term_set.schema_enum_suffix + 'Enum', permissible_values=pvs From a6dd2cb6e0403ad712199023ee6b5b5d0f010a58 Mon Sep 17 00:00:00 2001 From: Patrick Kalita Date: Fri, 19 Jan 2024 11:35:21 -0800 Subject: [PATCH 5/5] Run inject-gold-pathway-terms in venv --- project.Makefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/project.Makefile b/project.Makefile index 5281dbed..274928a8 100644 --- a/project.Makefile +++ b/project.Makefile @@ -208,7 +208,7 @@ local/nmdc.yaml - $(RUN) linkml-lint $@ > local/with_modifications.lint_report.txt src/nmdc_submission_schema/schema/nmdc_submission_schema.yaml: local/with_modifications.yaml project/thirdparty/GoldEcosystemTree.json - inject-gold-pathway-terms -g $(word 2,$^) -i $< -o $@ + $(RUN) inject-gold-pathway-terms -g $(word 2,$^) -i $< -o $@ # remove the multivalued true annotation from these gloabl slot definitions for the sake of linkml-convert # esp to tsv? and dumping to SQLite? # follow the .string_serialization=="{text};{float} {unit}" and .multivalued == true pattern?