MIxS sections to exclude?

[turbomam]

• core
  • use most or all
• environment field
  • use most or all
• investigation field
  • experimental_factor
  • neg_cont_type
  • pos_cont_type
  • project_name
  • samp_name
  • samp_taxon_id
• nucleic acid sequence source field
  • ref_biomaterial
  • rel_to_oxygen
  • samp_collec_device
  • samp_collec_method
  • samp_mat_process
  • samp_size
  • samp_vol_we_dna_ext
  • size_frac
  • source_mat_id
• sequencing field
  • use few or none

Just keep it simple and use all but sequencing fields?

[mslarae13]

@turbomam are you looking for my feedback / confirmation on which to exclude? The checked fields are excluded, correct?

[turbomam]

@turbomam are you looking for my feedback / confirmation on which to exclude? The checked fields are excluded, correct?

Yes, the checked MIxS sections or terms are the ones that I intended to exclude. The ultimate source of truth is whether a slots is assigned to an interface "destination class" in the Google Sheet.

I'm working on a tool to report the differences between MIxS slot recommendations and the slots we have actually associated. Unfortunately, the output is pretty verbose at this point.