diff --git a/.env.example b/.env.example
new file mode 100644
index 0000000..0fe84ea
--- /dev/null
+++ b/.env.example
@@ -0,0 +1,4 @@
+BASE_URL=https://api.microbiomedata.org
+SITE_ID=
+CLIENT_ID=
+CLIENT_SECRET=
\ No newline at end of file
diff --git a/poetry.lock b/poetry.lock
index 2a80896..53ee701 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,10 +1,10 @@
 [[package]]
 name = "alabaster"
-version = "0.7.12"
+version = "0.7.13"
 description = "A configurable sidebar-enabled Sphinx theme"
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.6"
 
 [[package]]
 name = "antlr4-python3-runtime"
@@ -15,16 +15,19 @@ optional = false
 python-versions = "*"
 
 [[package]]
-name = "argparse"
-version = "1.4.0"
-description = "Python command-line parsing library"
+name = "arrow"
+version = "1.2.3"
+description = "Better dates & times for Python"
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.6"
+
+[package.dependencies]
+python-dateutil = ">=2.7.0"
 
 [[package]]
 name = "asgiref"
-version = "3.5.0"
+version = "3.6.0"
 description = "ASGI specs, helper code, and adapters"
 category = "main"
 optional = false
@@ -33,47 +36,41 @@ python-versions = ">=3.7"
 [package.extras]
 tests = ["pytest", "pytest-asyncio", "mypy (>=0.800)"]
 
-[[package]]
-name = "atomicwrites"
-version = "1.4.0"
-description = "Atomic file writes."
-category = "dev"
-optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
-
 [[package]]
 name = "attrs"
-version = "21.4.0"
+version = "22.2.0"
 description = "Classes Without Boilerplate"
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+python-versions = ">=3.6"
 
 [package.extras]
-dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"]
-docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"]
-tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"]
-tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"]
+cov = ["attrs", "coverage-enable-subprocess", "coverage[toml] (>=5.3)"]
+dev = ["attrs"]
+docs = ["furo", "sphinx", "myst-parser", "zope.interface", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier"]
+tests = ["attrs", "zope.interface"]
+tests-no-zope = ["hypothesis", "pympler", "pytest (>=4.3.0)", "pytest-xdist", "cloudpickle", "mypy (>=0.971,<0.990)", "pytest-mypy-plugins"]
+tests_no_zope = ["hypothesis", "pympler", "pytest (>=4.3.0)", "pytest-xdist", "cloudpickle", "mypy (>=0.971,<0.990)", "pytest-mypy-plugins"]
 
 [[package]]
 name = "autopep8"
-version = "1.6.0"
+version = "1.7.1"
 description = "A tool that automatically formats Python code to conform to the PEP 8 style guide"
 category = "dev"
 optional = false
 python-versions = "*"
 
 [package.dependencies]
-pycodestyle = ">=2.8.0"
-toml = "*"
+pycodestyle = ">=2.9.1"
+tomli = "*"
 
 [[package]]
 name = "babel"
-version = "2.9.1"
+version = "2.11.0"
 description = "Internationalization utilities"
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+python-versions = ">=3.6"
 
 [package.dependencies]
 pytz = ">=2015.7"
@@ -88,7 +85,7 @@ python-versions = "*"
 
 [[package]]
 name = "bioregistry"
-version = "0.4.59"
+version = "0.4.120"
 description = "Integrated registry of biological databases and nomenclatures"
 category = "main"
 optional = false
@@ -104,28 +101,28 @@ tqdm = "*"
 
 [package.extras]
 align = ["pyyaml", "beautifulsoup4", "tabulate", "defusedxml"]
-charts = ["matplotlib", "matplotlib-venn", "seaborn"]
+charts = ["matplotlib", "matplotlib-venn", "seaborn", "pandas"]
 docs = ["sphinx", "sphinx-rtd-theme", "sphinx-click", "sphinx-autodoc-typehints", "sphinx-automodapi", "autodoc-pydantic"]
 export = ["pyyaml", "rdflib", "rdflib-jsonld"]
 gha = ["more-itertools"]
 health = ["click-default-group", "pandas"]
 tests = ["coverage", "pytest", "more-itertools"]
-web = ["pyyaml", "rdflib", "rdflib-jsonld", "flask", "flasgger", "bootstrap-flask (<=2.0.0)"]
+web = ["pyyaml", "rdflib", "rdflib-jsonld", "flask", "flasgger", "bootstrap-flask (<=2.0.0)", "markdown"]
 
 [[package]]
 name = "black"
-version = "22.1.0"
+version = "22.12.0"
 description = "The uncompromising code formatter."
 category = "dev"
 optional = false
-python-versions = ">=3.6.2"
+python-versions = ">=3.7"
 
 [package.dependencies]
 click = ">=8.0.0"
 mypy-extensions = ">=0.4.3"
 pathspec = ">=0.9.0"
 platformdirs = ">=2"
-tomli = ">=1.1.0"
+tomli = {version = ">=1.1.0", markers = "python_full_version < \"3.11.0a7\""}
 typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
@@ -134,21 +131,13 @@ d = ["aiohttp (>=3.7.4)"]
 jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"]
 uvloop = ["uvloop (>=0.15.2)"]
 
-[[package]]
-name = "cachetools"
-version = "5.0.0"
-description = "Extensible memoizing collections and decorators"
-category = "main"
-optional = false
-python-versions = "~=3.7"
-
 [[package]]
 name = "certifi"
-version = "2021.10.8"
+version = "2022.12.7"
 description = "Python package for providing Mozilla's CA Bundle."
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.6"
 
 [[package]]
 name = "cfgraph"
@@ -163,30 +152,27 @@ rdflib = ">=0.4.2"
 
 [[package]]
 name = "chardet"
-version = "4.0.0"
-description = "Universal encoding detector for Python 2 and 3"
+version = "5.1.0"
+description = "Universal encoding detector for Python 3"
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+python-versions = ">=3.7"
 
 [[package]]
 name = "charset-normalizer"
-version = "2.0.12"
+version = "3.0.1"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 category = "main"
 optional = false
-python-versions = ">=3.5.0"
-
-[package.extras]
-unicode_backport = ["unicodedata2"]
+python-versions = "*"
 
 [[package]]
 name = "click"
-version = "8.0.3"
+version = "8.1.3"
 description = "Composable command line interface toolkit"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 colorama = {version = "*", markers = "platform_system == \"Windows\""}
@@ -204,11 +190,11 @@ click = "*"
 
 [[package]]
 name = "colorama"
-version = "0.4.4"
+version = "0.4.6"
 description = "Cross-platform colored terminal text."
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
 
 [[package]]
 name = "commonmark"
@@ -219,7 +205,27 @@ optional = false
 python-versions = "*"
 
 [package.extras]
-test = ["flake8 (==3.7.8)", "hypothesis (==3.55.3)"]
+test = ["hypothesis (==3.55.3)", "flake8 (==3.7.8)"]
+
+[[package]]
+name = "curies"
+version = "0.4.2"
+description = "Idiomatic conversion between URIs and compact URIs (CURIEs)."
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+pytrie = "*"
+requests = "*"
+
+[package.extras]
+bioregistry = ["bioregistry (>=0.5.136)"]
+docs = ["sphinx", "sphinx-rtd-theme", "sphinx-autodoc-typehints", "sphinx-automodapi"]
+fastapi = ["fastapi", "httpx"]
+flask = ["flask"]
+pandas = ["pandas"]
+tests = ["pytest", "coverage"]
 
 [[package]]
 name = "decorator"
@@ -253,9 +259,9 @@ python-versions = ">=3"
 
 [[package]]
 name = "distlib"
-version = "0.3.4"
+version = "0.3.6"
 description = "Distribution utilities"
-category = "dev"
+category = "main"
 optional = false
 python-versions = "*"
 
@@ -283,29 +289,40 @@ category = "main"
 optional = false
 python-versions = ">=3.6"
 
+[[package]]
+name = "exceptiongroup"
+version = "1.1.0"
+description = "Backport of PEP 654 (exception groups)"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.extras]
+test = ["pytest (>=6)"]
+
 [[package]]
 name = "filelock"
-version = "3.5.1"
+version = "3.9.0"
 description = "A platform independent file lock."
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-docs = ["furo (>=2021.8.17b43)", "sphinx (>=4.1)", "sphinx-autodoc-typehints (>=1.12)"]
-testing = ["covdefaults (>=1.2.0)", "coverage (>=4)", "pytest (>=4)", "pytest-cov", "pytest-timeout (>=1.4.2)"]
+docs = ["furo (>=2022.12.7)", "sphinx-autodoc-typehints (>=1.19.5)", "sphinx (>=5.3)"]
+testing = ["covdefaults (>=2.2.2)", "coverage (>=7.0.1)", "pytest-cov (>=4)", "pytest-timeout (>=2.1)", "pytest (>=7.2)"]
 
 [[package]]
-name = "frozendict"
-version = "2.3.0"
-description = "A simple immutable dictionary"
+name = "fqdn"
+version = "1.5.1"
+description = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4"
 
 [[package]]
 name = "funowl"
-version = "0.1.11"
+version = "0.1.13"
 description = "Python rendering of the OWL Functional syntax"
 category = "main"
 optional = false
@@ -313,8 +330,9 @@ python-versions = ">=3.7"
 
 [package.dependencies]
 bcp47 = "*"
+jsonasobj = "*"
 pyjsg = ">=0.11.6"
-rdflib = ">=5.0.0,<6.1.0 || >=6.2.0"
+rdflib = "6.2.0"
 rdflib-shim = "*"
 rfc3987 = "*"
 
@@ -328,7 +346,7 @@ python-versions = "*"
 
 [[package]]
 name = "googlemaps"
-version = "4.6.0"
+version = "4.10.0"
 description = "Python client library for Google Maps Platform"
 category = "main"
 optional = false
@@ -339,35 +357,36 @@ requests = ">=2.20.0,<3.0"
 
 [[package]]
 name = "graphviz"
-version = "0.19.1"
+version = "0.20.1"
 description = "Simple Python interface for Graphviz"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.extras]
 dev = ["tox (>=3)", "flake8", "pep8-naming", "wheel", "twine"]
-docs = ["sphinx (>=1.8)", "sphinx-autodoc-typehints", "sphinx-rtd-theme"]
-test = ["pytest (>=6)", "pytest-mock (>=3)", "mock (>=4)", "pytest-cov", "coverage"]
+docs = ["sphinx (>=5)", "sphinx-autodoc-typehints", "sphinx-rtd-theme"]
+test = ["pytest (>=7)", "pytest-mock (>=3)", "mock (>=4)", "pytest-cov", "coverage"]
 
 [[package]]
 name = "greenlet"
-version = "1.1.2"
+version = "2.0.2"
 description = "Lightweight in-process concurrent programming"
 category = "main"
 optional = false
 python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
 
 [package.extras]
-docs = ["sphinx"]
+docs = ["sphinx", "docutils (<0.18)"]
+test = ["objgraph", "psutil"]
 
 [[package]]
 name = "h11"
-version = "0.13.0"
+version = "0.14.0"
 description = "A pure-Python, bring-your-own-I/O implementation of HTTP/1.1"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [[package]]
 name = "hbreader"
@@ -379,7 +398,7 @@ python-versions = ">=3.7"
 
 [[package]]
 name = "idna"
-version = "3.3"
+version = "3.4"
 description = "Internationalized Domain Names in Applications (IDNA)"
 category = "main"
 optional = false
@@ -387,7 +406,7 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "imagesize"
-version = "1.3.0"
+version = "1.4.1"
 description = "Getting image size from png/jpeg/jpeg2000/gif file"
 category = "main"
 optional = false
@@ -395,7 +414,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "importlib-metadata"
-version = "4.11.1"
+version = "4.13.0"
 description = "Read metadata from Python packages"
 category = "main"
 optional = false
@@ -405,29 +424,32 @@ python-versions = ">=3.7"
 zipp = ">=0.5"
 
 [package.extras]
-docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
+docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "jaraco.tidelift (>=1.4)"]
 perf = ["ipython"]
-testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"]
 
 [[package]]
 name = "inflect"
-version = "5.4.0"
+version = "6.0.2"
 description = "Correctly generate plurals, singular nouns, ordinals, indefinite articles; convert numbers to words"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 
+[package.dependencies]
+pydantic = ">=1.9.1"
+
 [package.extras]
-docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)", "jaraco.tidelift (>=1.4)"]
-testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "pygments", "pytest-black (>=0.3.7)", "pytest-mypy"]
+docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "jaraco.tidelift (>=1.4)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "pygments", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"]
 
 [[package]]
 name = "iniconfig"
-version = "1.1.1"
-description = "iniconfig: brain-dead simple config-ini parsing"
-category = "dev"
+version = "2.0.0"
+description = "brain-dead simple config-ini parsing"
+category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.7"
 
 [[package]]
 name = "isodate"
@@ -440,13 +462,24 @@ python-versions = "*"
 [package.dependencies]
 six = "*"
 
+[[package]]
+name = "isoduration"
+version = "20.11.0"
+description = "Operations with ISO 8601 durations"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.dependencies]
+arrow = ">=0.15.0"
+
 [[package]]
 name = "jinja2"
-version = "3.0.3"
+version = "3.1.2"
 description = "A very fast and expressive template engine."
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 MarkupSafe = ">=2.0"
@@ -456,7 +489,7 @@ i18n = ["Babel (>=2.7)"]
 
 [[package]]
 name = "json-flattener"
-version = "0.1.7"
+version = "0.1.9"
 description = "Python library for denormalizing nested dicts or json objects to tables and back"
 category = "main"
 optional = false
@@ -514,7 +547,7 @@ six = "*"
 
 [[package]]
 name = "jsonpointer"
-version = "2.2"
+version = "2.3"
 description = "Identify specific nodes in a JSON document (RFC 6901)"
 category = "main"
 optional = false
@@ -522,7 +555,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "jsonschema"
-version = "4.4.0"
+version = "4.17.3"
 description = "An implementation of JSON Schema validation for Python"
 category = "main"
 optional = false
@@ -530,55 +563,61 @@ python-versions = ">=3.7"
 
 [package.dependencies]
 attrs = ">=17.4.0"
+fqdn = {version = "*", optional = true, markers = "extra == \"format\""}
+idna = {version = "*", optional = true, markers = "extra == \"format\""}
+isoduration = {version = "*", optional = true, markers = "extra == \"format\""}
+jsonpointer = {version = ">1.13", optional = true, markers = "extra == \"format\""}
 pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2"
+rfc3339-validator = {version = "*", optional = true, markers = "extra == \"format\""}
+rfc3987 = {version = "*", optional = true, markers = "extra == \"format\""}
+uri-template = {version = "*", optional = true, markers = "extra == \"format\""}
+webcolors = {version = ">=1.11", optional = true, markers = "extra == \"format\""}
 
 [package.extras]
 format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"]
-format_nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]
+format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]
 
 [[package]]
 name = "linkml"
-version = "1.1.18"
+version = "1.4.4"
 description = "Linked Open Data Modeling Language"
 category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.7.6,<4.0.0"
 
 [package.dependencies]
-argparse = ">=1.4.0"
+antlr4-python3-runtime = ">=4.9.0,<4.10"
 click = ">=7.0"
 graphviz = ">=0.10.1"
 hbreader = "*"
 isodate = ">=0.6.0"
-jinja2 = "*"
-jsonasobj2 = ">=1.0.3,<2.0"
-jsonschema = ">=3.0.1"
+jinja2 = ">=3.1.0"
+jsonasobj2 = ">=1.0.3,<2.0.0"
+jsonschema = {version = ">=4.0.0", extras = ["format"]}
 linkml-dataops = "*"
-linkml-runtime = ">=1.1.15"
+linkml-runtime = ">=1,<2"
 myst-parser = "*"
 openpyxl = "*"
-pandas = "*"
 parse = "*"
 prefixcommons = ">=0.1.7"
-prologterms = ">=0.0.6"
+prefixmaps = ">=0.1.3,<0.2.0"
 pydantic = "*"
 pyjsg = ">=0.11.6"
-pyldmod = ">=2.0.5"
 pyshex = ">=0.7.20"
 pyshexc = ">=0.8.3"
 python-dateutil = "*"
-pyyaml = ">=5.1,<6.0"
-rdflib = ">=5.0.0"
-rdflib-jsonld = "0.6.1"
-rdflib-pyldmod-compat = ">=0.1.2c"
-rdflib-shim = "*"
+pyyaml = "*"
+rdflib = ">=6.0.0"
 requests = ">=2.22"
-sphinx = "*"
 sphinx-click = "*"
 sphinx-rtd-theme = "*"
-sqlalchemy = "*"
+sqlalchemy = ">=1.4.31"
+tox = ">=3.25.1,<4.0.0"
 watchdog = ">=0.9.0"
 
+[package.extras]
+docs = ["furo[docs] (>=2022.9.29,<2023.0.0)", "sphinx", "sphinxcontrib-mermaid[docs] (>=0.7.1,<0.8.0)"]
+
 [[package]]
 name = "linkml-dataops"
 version = "0.1.0"
@@ -596,152 +635,138 @@ linkml-runtime = ">=1.1.6"
 
 [[package]]
 name = "linkml-runtime"
-version = "1.1.23"
+version = "1.4.5"
 description = "Runtime environment for LinkML, the Linked open data modeling language"
 category = "main"
 optional = false
-python-versions = ">=3.7.1,<4.0.0"
+python-versions = ">=3.7.6,<4.0.0"
 
 [package.dependencies]
 click = "*"
+curies = ">=0.4.0,<0.5.0"
 deprecated = "*"
 hbreader = "*"
-json-flattener = ">=0.1.7"
+json-flattener = ">=0.1.9"
 jsonasobj2 = ">=1.0.4,<2.0.0"
 jsonschema = ">=3.2.0"
-prefixcommons = "*"
-pyldmod = "*"
-pyyaml = ">=5.1.0,<6.0.0"
-rdflib = ">=5.0.0"
-rdflib-jsonld = "0.6.1"
-rdflib-pyldmod-compat = "*"
-rdflib-shim = ">=1.0.3"
+prefixcommons = ">=0.1.12"
+prefixmaps = ">=0.1.4"
+pyyaml = "*"
+rdflib = ">=6.0.0"
 requests = "*"
-shexjsg = ">=0.7.0,<1.0.0"
-
-[[package]]
-name = "lxml"
-version = "4.7.1"
-description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API."
-category = "main"
-optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*"
-
-[package.extras]
-cssselect = ["cssselect (>=0.7)"]
-html5 = ["html5lib"]
-htmlsoup = ["beautifulsoup4"]
-source = ["Cython (>=0.29.7)"]
 
 [[package]]
 name = "markdown-it-py"
-version = "2.0.1"
+version = "2.1.0"
 description = "Python port of markdown-it. Markdown parsing, done right!"
 category = "main"
 optional = false
-python-versions = "~=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
-attrs = ">=19,<22"
 mdurl = ">=0.1,<1.0"
 
 [package.extras]
-benchmarking = ["psutil", "pytest", "pytest-benchmark (>=3.2,<4.0)"]
-code_style = ["pre-commit (==2.6)"]
-compare = ["commonmark (>=0.9.1,<0.10.0)", "markdown (>=3.2.2,<3.3.0)", "mistletoe-ebp (>=0.10.0,<0.11.0)", "mistune (>=0.8.4,<0.9.0)", "panflute (>=1.12,<2.0)"]
-linkify = ["linkify-it-py (>=1.0,<2.0)"]
+testing = ["pytest-regressions", "pytest-cov", "pytest", "coverage"]
+rtd = ["sphinx-book-theme", "sphinx-design", "sphinx-copybutton", "sphinx", "pyyaml", "myst-parser", "attrs"]
+profiling = ["gprof2dot"]
 plugins = ["mdit-py-plugins"]
-rtd = ["myst-nb (==0.13.0a1)", "pyyaml", "sphinx (>=2,<4)", "sphinx-copybutton", "sphinx-panels (>=0.4.0,<0.5.0)", "sphinx-book-theme"]
-testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
+linkify = ["linkify-it-py (>=1.0,<2.0)"]
+compare = ["panflute (>=2.1.3,<2.2.0)", "mistune (>=2.0.2,<2.1.0)", "mistletoe (>=0.8.1,<0.9.0)", "markdown (>=3.3.6,<3.4.0)", "commonmark (>=0.9.1,<0.10.0)"]
+code_style = ["pre-commit (==2.6)"]
+benchmarking = ["pytest-benchmark (>=3.2,<4.0)", "pytest", "psutil"]
 
 [[package]]
 name = "markupsafe"
-version = "2.0.1"
+version = "2.1.2"
 description = "Safely add untrusted strings to HTML/XML markup."
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [[package]]
 name = "mdit-py-plugins"
-version = "0.3.0"
+version = "0.3.3"
 description = "Collection of plugins for markdown-it-py"
 category = "main"
 optional = false
-python-versions = "~=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 markdown-it-py = ">=1.0.0,<3.0.0"
 
 [package.extras]
-code_style = ["pre-commit (==2.6)"]
-rtd = ["myst-parser (>=0.14.0,<0.15.0)", "sphinx-book-theme (>=0.1.0,<0.2.0)"]
-testing = ["coverage", "pytest (>=3.6,<4)", "pytest-cov", "pytest-regressions"]
+code_style = ["pre-commit"]
+rtd = ["attrs", "myst-parser (>=0.16.1,<0.17.0)", "sphinx-book-theme (>=0.1.0,<0.2.0)"]
+testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
 
 [[package]]
 name = "mdurl"
-version = "0.1.0"
+version = "0.1.2"
 description = "Markdown URL utilities"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [[package]]
 name = "more-click"
-version = "0.0.6"
+version = "0.1.2"
 description = "More click."
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 click = "*"
 
+[package.extras]
+tests = ["coverage", "pytest"]
+
 [[package]]
 name = "mypy-extensions"
-version = "0.4.3"
-description = "Experimental type system extensions for programs checked with the mypy typechecker."
+version = "1.0.0"
+description = "Type system extensions for programs checked with the mypy type checker."
 category = "dev"
 optional = false
-python-versions = "*"
+python-versions = ">=3.5"
 
 [[package]]
 name = "myst-parser"
-version = "0.17.0"
+version = "0.18.1"
 description = "An extended commonmark compliant parser, with bridges to docutils & sphinx."
 category = "main"
 optional = false
 python-versions = ">=3.7"
 
 [package.dependencies]
-docutils = ">=0.15,<0.18"
+docutils = ">=0.15,<0.20"
 jinja2 = "*"
 markdown-it-py = ">=1.0.0,<3.0.0"
-mdit-py-plugins = ">=0.3.0,<0.4.0"
+mdit-py-plugins = ">=0.3.1,<0.4.0"
 pyyaml = "*"
-sphinx = ">=3.1,<5"
+sphinx = ">=4,<6"
 typing-extensions = "*"
 
 [package.extras]
 code_style = ["pre-commit (>=2.12,<3.0)"]
 linkify = ["linkify-it-py (>=1.0,<2.0)"]
-rtd = ["ipython", "sphinx-book-theme (>=0.1.0,<0.2.0)", "sphinx-panels (>=0.5.2,<0.6.0)", "sphinxcontrib-bibtex (>=2.1,<3.0)", "sphinxext-rediraffe (>=0.2,<1.0)", "sphinxcontrib.mermaid (>=0.6.3,<0.7.0)", "sphinxext-opengraph (>=0.4.2,<0.5.0)"]
-testing = ["beautifulsoup4", "coverage", "docutils (>=0.17.0,<0.18.0)", "pytest (>=6,<7)", "pytest-cov", "pytest-regressions", "pytest-param-files (>=0.3.4,<0.4.0)"]
+rtd = ["ipython", "sphinx-book-theme", "sphinx-design", "sphinxext-rediraffe (>=0.2.7,<0.3.0)", "sphinxcontrib.mermaid (>=0.7.1,<0.8.0)", "sphinxext-opengraph (>=0.6.3,<0.7.0)"]
+testing = ["beautifulsoup4", "coverage", "pytest (>=6,<7)", "pytest-cov", "pytest-regressions", "pytest-param-files (>=0.3.4,<0.4.0)", "sphinx-pytest", "sphinx (<5.2)"]
 
 [[package]]
 name = "nmdc-schema"
-version = "2.0.0"
+version = "7.4.7"
 description = "Schema resources for the National Microbiome Data Collaborative (NMDC)"
 category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.9,<4.0"
 
 [package.dependencies]
-linkml = "*"
+linkml-runtime = ">=1.3.0,<2.0.0"
 
 [[package]]
 name = "num2words"
-version = "0.5.10"
+version = "0.5.12"
 description = "Modules to convert numbers to words. Easily extensible."
 category = "main"
 optional = false
@@ -752,15 +777,15 @@ docopt = ">=0.6.2"
 
 [[package]]
 name = "numpy"
-version = "1.22.2"
-description = "NumPy is the fundamental package for array computing with Python."
+version = "1.24.2"
+description = "Fundamental package for array computing in Python"
 category = "main"
 optional = false
 python-versions = ">=3.8"
 
 [[package]]
 name = "openpyxl"
-version = "3.0.9"
+version = "3.1.0"
 description = "A Python library to read/write Excel 2010 xlsx/xlsm files"
 category = "main"
 optional = false
@@ -771,18 +796,15 @@ et-xmlfile = "*"
 
 [[package]]
 name = "packaging"
-version = "21.3"
+version = "23.0"
 description = "Core utilities for Python packages"
 category = "main"
 optional = false
-python-versions = ">=3.6"
-
-[package.dependencies]
-pyparsing = ">=2.0.2,<3.0.5 || >3.0.5"
+python-versions = ">=3.7"
 
 [[package]]
 name = "pandas"
-version = "1.4.1"
+version = "1.5.3"
 description = "Powerful data structures for data analysis, time series, and statistics"
 category = "main"
 optional = false
@@ -790,10 +812,9 @@ python-versions = ">=3.8"
 
 [package.dependencies]
 numpy = [
-    {version = ">=1.18.5", markers = "platform_machine != \"aarch64\" and platform_machine != \"arm64\" and python_version < \"3.10\""},
-    {version = ">=1.19.2", markers = "platform_machine == \"aarch64\" and python_version < \"3.10\""},
-    {version = ">=1.20.0", markers = "platform_machine == \"arm64\" and python_version < \"3.10\""},
+    {version = ">=1.20.3", markers = "python_version < \"3.10\""},
     {version = ">=1.21.0", markers = "python_version >= \"3.10\""},
+    {version = ">=1.23.2", markers = "python_version >= \"3.11\""},
 ]
 python-dateutil = ">=2.8.1"
 pytz = ">=2020.1"
@@ -811,35 +832,35 @@ python-versions = "*"
 
 [[package]]
 name = "pathspec"
-version = "0.9.0"
+version = "0.11.0"
 description = "Utility library for gitignore style pattern matching of file paths."
 category = "dev"
 optional = false
-python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
+python-versions = ">=3.7"
 
 [[package]]
 name = "platformdirs"
-version = "2.5.0"
-description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
-category = "dev"
+version = "2.6.2"
+description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
+category = "main"
 optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-docs = ["Sphinx (>=4)", "furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)"]
-test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)"]
+docs = ["furo (>=2022.12.7)", "proselint (>=0.13)", "sphinx-autodoc-typehints (>=1.19.5)", "sphinx (>=5.3)"]
+test = ["appdirs (==1.4.4)", "covdefaults (>=2.2.2)", "pytest-cov (>=4)", "pytest-mock (>=3.10)", "pytest (>=7.2)"]
 
 [[package]]
 name = "pluggy"
 version = "1.0.0"
 description = "plugin and hook calling mechanisms for python"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.6"
 
 [package.extras]
-dev = ["pre-commit", "tox"]
-testing = ["pytest", "pytest-benchmark"]
+testing = ["pytest-benchmark", "pytest"]
+dev = ["tox", "pre-commit"]
 
 [[package]]
 name = "ply"
@@ -851,53 +872,56 @@ python-versions = "*"
 
 [[package]]
 name = "prefixcommons"
-version = "0.1.9"
-description = "Library for working prefixcommons.org CURIEs"
+version = "0.1.12"
+description = "A python API for working with ID prefixes"
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.7,<4.0"
 
 [package.dependencies]
-pyyaml = "*"
-requests = "*"
-
-[package.extras]
-test = ["pytest"]
+click = ">=8.1.3,<9.0.0"
+pytest-logging = ">=2015.11.4,<2016.0.0"
+PyYAML = ">=6.0,<7.0"
+requests = ">=2.28.1,<3.0.0"
 
 [[package]]
-name = "prologterms"
-version = "0.0.6"
-description = "A simple python library for generating prolog terms"
+name = "prefixmaps"
+version = "0.1.4"
+description = "A python library for retrieving semantic prefix maps"
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.7.6,<4.0.0"
+
+[package.dependencies]
+importlib-metadata = ">=4.12.0,<5.0.0"
+pyyaml = ">=5.3.1"
 
 [[package]]
 name = "py"
 version = "1.11.0"
 description = "library with cross-python path, ini-parsing, io, code, log facilities"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [[package]]
 name = "pycodestyle"
-version = "2.8.0"
+version = "2.10.0"
 description = "Python style guide checker"
 category = "dev"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+python-versions = ">=3.6"
 
 [[package]]
 name = "pydantic"
-version = "1.9.0"
-description = "Data validation and settings management using python 3.6 type hinting"
+version = "1.10.4"
+description = "Data validation and settings management using python type hints"
 category = "main"
 optional = false
-python-versions = ">=3.6.1"
+python-versions = ">=3.7"
 
 [package.dependencies]
-typing-extensions = ">=3.7.4.3"
+typing-extensions = ">=4.2.0"
 
 [package.extras]
 dotenv = ["python-dotenv (>=0.10.4)"]
@@ -905,57 +929,41 @@ email = ["email-validator (>=1.0.3)"]
 
 [[package]]
 name = "pygments"
-version = "2.11.2"
+version = "2.14.0"
 description = "Pygments is a syntax highlighting package written in Python."
 category = "main"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.6"
+
+[package.extras]
+plugins = ["importlib-metadata"]
 
 [[package]]
 name = "pyjsg"
-version = "0.11.9"
+version = "0.11.10"
 description = "Python JSON Schema Grammar interpreter"
 category = "main"
 optional = false
 python-versions = "*"
 
 [package.dependencies]
-antlr4-python3-runtime = ">=4.9,<5.0"
+antlr4-python3-runtime = ">=4.9.3,<4.10.0"
 jsonasobj = ">=1.2.1"
 
-[[package]]
-name = "pyldmod"
-version = "2.0.5"
-description = "modified Python implementation of the JSON-LD API"
-category = "main"
-optional = false
-python-versions = "*"
-
-[package.dependencies]
-cachetools = "*"
-frozendict = "*"
-lxml = "*"
-
-[package.extras]
-aiohttp = ["aiohttp"]
-cachetools = ["cachetools"]
-frozendict = ["frozendict"]
-requests = ["requests"]
-
 [[package]]
 name = "pyparsing"
-version = "3.0.7"
-description = "Python parsing module"
+version = "3.0.9"
+description = "pyparsing module - Classes and methods to define and execute parsing grammars"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.6.8"
 
 [package.extras]
-diagrams = ["jinja2", "railroad-diagrams"]
+diagrams = ["railroad-diagrams", "jinja2"]
 
 [[package]]
 name = "pyrsistent"
-version = "0.18.1"
+version = "0.19.3"
 description = "Persistent/Functional/Immutable data structures"
 category = "main"
 optional = false
@@ -963,7 +971,7 @@ python-versions = ">=3.7"
 
 [[package]]
 name = "pyshex"
-version = "0.8.0"
+version = "0.8.1"
 description = "Python ShEx Implementation"
 category = "main"
 optional = false
@@ -972,35 +980,33 @@ python-versions = ">=3.6"
 [package.dependencies]
 cfgraph = ">=0.2.1"
 chardet = "*"
-pyshexc = "0.9.0"
-rdflib = ">=5.0.0"
+pyshexc = "0.9.1"
 rdflib-shim = "*"
 requests = ">=2.22.0"
-shexjsg = ">=0.8.1"
+shexjsg = ">=0.8.2"
 sparqlslurper = ">=0.5.1"
 sparqlwrapper = ">=1.8.5"
 urllib3 = "*"
 
 [[package]]
 name = "pyshexc"
-version = "0.9.0"
+version = "0.9.1"
 description = "PyShExC - Python ShEx compiler"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 
 [package.dependencies]
-antlr4-python3-runtime = ">=4.9,<5.0"
+antlr4-python3-runtime = ">=4.9.3,<4.10.0"
 chardet = "*"
 jsonasobj = ">=1.2.1"
-pyjsg = ">=0.11.9"
-rdflib = ">=5.0.0"
+pyjsg = ">=0.11.10"
 rdflib-shim = "*"
 shexjsg = ">=0.8.1"
 
 [[package]]
 name = "pystow"
-version = "0.4.0"
+version = "0.4.9"
 description = "Easily pick a place to store data for your python package."
 category = "main"
 optional = false
@@ -1016,30 +1022,40 @@ aws = ["boto3"]
 docs = ["sphinx", "sphinx-rtd-theme", "sphinx-click", "sphinx-autodoc-typehints", "sphinx-automodapi"]
 pandas = ["pandas"]
 rdf = ["rdflib"]
-tests = ["coverage", "pytest"]
+tests = ["coverage", "pytest", "requests-file"]
 xml = ["lxml"]
 
 [[package]]
 name = "pytest"
-version = "7.0.1"
+version = "7.2.1"
 description = "pytest: simple powerful testing with Python"
-category = "dev"
+category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
-atomicwrites = {version = ">=1.0", markers = "sys_platform == \"win32\""}
 attrs = ">=19.2.0"
 colorama = {version = "*", markers = "sys_platform == \"win32\""}
+exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""}
 iniconfig = "*"
 packaging = "*"
 pluggy = ">=0.12,<2.0"
-py = ">=1.8.2"
-tomli = ">=1.0.0"
+tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""}
 
 [package.extras]
 testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"]
 
+[[package]]
+name = "pytest-logging"
+version = "2015.11.4"
+description = "Configures logging and allows tweaking the log level with a py.test flag"
+category = "main"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+pytest = ">=2.8.1"
+
 [[package]]
 name = "python-dateutil"
 version = "2.8.2"
@@ -1051,9 +1067,31 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
 [package.dependencies]
 six = ">=1.5"
 
+[[package]]
+name = "python-dotenv"
+version = "0.21.1"
+description = "Read key-value pairs from a .env file and set them as environment variables"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.extras]
+cli = ["click (>=5.0)"]
+
+[[package]]
+name = "pytrie"
+version = "0.4.0"
+description = "A pure Python implementation of the trie data structure."
+category = "main"
+optional = false
+python-versions = "*"
+
+[package.dependencies]
+sortedcontainers = "*"
+
 [[package]]
 name = "pytz"
-version = "2021.3"
+version = "2022.7.1"
 description = "World timezone definitions, modern and historical"
 category = "main"
 optional = false
@@ -1061,15 +1099,15 @@ python-versions = "*"
 
 [[package]]
 name = "pyyaml"
-version = "5.4.1"
+version = "6.0"
 description = "YAML parser and emitter for Python"
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
+python-versions = ">=3.6"
 
 [[package]]
 name = "quantulum3"
-version = "0.7.10"
+version = "0.7.11"
 description = "Extract quantities from unstructured text."
 category = "main"
 optional = false
@@ -1081,7 +1119,7 @@ num2words = "*"
 
 [[package]]
 name = "rdflib"
-version = "6.0.2"
+version = "6.2.0"
 description = "RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information."
 category = "main"
 optional = false
@@ -1092,9 +1130,12 @@ isodate = "*"
 pyparsing = "*"
 
 [package.extras]
-docs = ["sphinx (<5)", "sphinxcontrib-apidoc"]
+berkeleydb = ["berkeleydb"]
+dev = ["black (==22.6.0)", "flake8", "isort", "mypy", "pep8-naming", "types-setuptools", "flakeheaven"]
+docs = ["myst-parser", "sphinx (<6)", "sphinxcontrib-apidoc", "sphinxcontrib-kroki", "sphinx-autodoc-typehints"]
 html = ["html5lib"]
-tests = ["html5lib", "networkx", "nose (==1.3.7)", "nose-timer", "coverage", "black (==21.6b0)", "flake8", "doctest-ignore-unicode (==0.1.2)"]
+networkx = ["networkx"]
+tests = ["html5lib", "pytest", "pytest-cov"]
 
 [[package]]
 name = "rdflib-jsonld"
@@ -1107,19 +1148,6 @@ python-versions = "*"
 [package.dependencies]
 rdflib = ">=5.0.0"
 
-[[package]]
-name = "rdflib-pyldmod-compat"
-version = "0.1.2"
-description = "Conversion between rdflib and PyLD data formats for compatibility"
-category = "main"
-optional = false
-python-versions = "*"
-
-[package.dependencies]
-pyldmod = "*"
-rdflib = ">=4.2.0"
-testfixtures = "*"
-
 [[package]]
 name = "rdflib-shim"
 version = "1.0.3"
@@ -1147,21 +1175,32 @@ sphinx = ">=1.3.1"
 
 [[package]]
 name = "requests"
-version = "2.27.1"
+version = "2.28.2"
 description = "Python HTTP for Humans."
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
+python-versions = ">=3.7, <4"
 
 [package.dependencies]
 certifi = ">=2017.4.17"
-charset-normalizer = {version = ">=2.0.0,<2.1.0", markers = "python_version >= \"3\""}
-idna = {version = ">=2.5,<4", markers = "python_version >= \"3\""}
+charset-normalizer = ">=2,<4"
+idna = ">=2.5,<4"
 urllib3 = ">=1.21.1,<1.27"
 
 [package.extras]
-socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"]
-use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"]
+socks = ["PySocks (>=1.5.6,!=1.5.7)"]
+use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"]
+
+[[package]]
+name = "rfc3339-validator"
+version = "0.1.4"
+description = "A pure python RFC3339 validator"
+category = "main"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+
+[package.dependencies]
+six = "*"
 
 [[package]]
 name = "rfc3987"
@@ -1188,7 +1227,7 @@ jinja2 = ["ruamel.yaml.jinja2 (>=0.2)"]
 
 [[package]]
 name = "ruamel.yaml.clib"
-version = "0.2.6"
+version = "0.2.7"
 description = "C version of reader, parser and emitter for ruamel.yaml derived from libyaml"
 category = "main"
 optional = false
@@ -1196,14 +1235,14 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "shexjsg"
-version = "0.8.1"
+version = "0.8.2"
 description = "ShExJSG - Astract Syntax Tree for the ShEx 2.0 language"
 category = "main"
 optional = false
 python-versions = "*"
 
 [package.dependencies]
-pyjsg = ">=0.11.9"
+pyjsg = ">=0.11.10"
 
 [[package]]
 name = "six"
@@ -1221,6 +1260,14 @@ category = "main"
 optional = false
 python-versions = "*"
 
+[[package]]
+name = "sortedcontainers"
+version = "2.4.0"
+description = "Sorted Containers -- Sorted List, Sorted Dict, Sorted Set"
+category = "main"
+optional = false
+python-versions = "*"
+
 [[package]]
 name = "sparqlslurper"
 version = "0.5.1"
@@ -1236,21 +1283,24 @@ sparqlwrapper = ">=1.8.2"
 
 [[package]]
 name = "sparqlwrapper"
-version = "1.8.5"
+version = "2.0.0"
 description = "SPARQL Endpoint interface to Python"
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.7"
 
 [package.dependencies]
-rdflib = ">=4.0"
+rdflib = ">=6.1.1"
 
 [package.extras]
+pandas = ["pandas (>=1.3.5)"]
 keepalive = ["keepalive (>=0.5)"]
+docs = ["sphinx-rtd-theme", "sphinx (<5)"]
+dev = ["pandas-stubs (>=1.2.0.48)", "pandas (>=1.3.5)", "mypy (>=0.931)", "setuptools (>=3.7.1)"]
 
 [[package]]
 name = "sphinx"
-version = "4.4.0"
+version = "4.5.0"
 description = "Python documentation generator"
 category = "main"
 optional = false
@@ -1282,11 +1332,11 @@ test = ["pytest", "pytest-cov", "html5lib", "cython", "typed-ast"]
 
 [[package]]
 name = "sphinx-click"
-version = "3.1.0"
+version = "4.4.0"
 description = "Sphinx extension that automatically documents click applications"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 click = ">=7.0"
@@ -1295,26 +1345,26 @@ sphinx = ">=2.0"
 
 [[package]]
 name = "sphinx-rtd-theme"
-version = "1.0.0"
+version = "1.1.1"
 description = "Read the Docs theme for Sphinx"
 category = "main"
 optional = false
-python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*"
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7"
 
 [package.dependencies]
 docutils = "<0.18"
-sphinx = ">=1.6"
+sphinx = ">=1.6,<6"
 
 [package.extras]
-dev = ["transifex-client", "sphinxcontrib-httpdomain", "bump2version"]
+dev = ["transifex-client", "sphinxcontrib-httpdomain", "bump2version", "wheel"]
 
 [[package]]
 name = "sphinxcontrib-applehelp"
-version = "1.0.2"
-description = "sphinxcontrib-applehelp is a sphinx extension which outputs Apple help books"
+version = "1.0.4"
+description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books"
 category = "main"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.8"
 
 [package.extras]
 lint = ["flake8", "mypy", "docutils-stubs"]
@@ -1329,16 +1379,16 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
-lint = ["flake8", "mypy", "docutils-stubs"]
 test = ["pytest"]
+lint = ["docutils-stubs", "mypy", "flake8"]
 
 [[package]]
 name = "sphinxcontrib-htmlhelp"
-version = "2.0.0"
+version = "2.0.1"
 description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
 
 [package.extras]
 lint = ["flake8", "mypy", "docutils-stubs"]
@@ -1353,7 +1403,7 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
-test = ["pytest", "flake8", "mypy"]
+test = ["mypy", "flake8", "pytest"]
 
 [[package]]
 name = "sphinxcontrib-qthelp"
@@ -1364,8 +1414,8 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
-lint = ["flake8", "mypy", "docutils-stubs"]
 test = ["pytest"]
+lint = ["docutils-stubs", "mypy", "flake8"]
 
 [[package]]
 name = "sphinxcontrib-serializinghtml"
@@ -1381,70 +1431,52 @@ test = ["pytest"]
 
 [[package]]
 name = "sqlalchemy"
-version = "1.4.31"
+version = "2.0.2"
 description = "Database Abstraction Library"
 category = "main"
 optional = false
-python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
+python-versions = ">=3.7"
 
 [package.dependencies]
-greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"}
+greenlet = {version = "!=0.4.17", markers = "platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\""}
+typing-extensions = ">=4.2.0"
 
 [package.extras]
 aiomysql = ["greenlet (!=0.4.17)", "aiomysql"]
-aiosqlite = ["typing_extensions (!=3.10.0.1)", "greenlet (!=0.4.17)", "aiosqlite"]
+aiosqlite = ["greenlet (!=0.4.17)", "aiosqlite", "typing-extensions (!=3.10.0.1)"]
 asyncio = ["greenlet (!=0.4.17)"]
-asyncmy = ["greenlet (!=0.4.17)", "asyncmy (>=0.2.3)"]
-mariadb_connector = ["mariadb (>=1.0.1)"]
+asyncmy = ["greenlet (!=0.4.17)", "asyncmy (>=0.2.3,!=0.2.4,!=0.2.6)"]
+mariadb_connector = ["mariadb (>=1.0.1,!=1.1.2,!=1.1.5)"]
 mssql = ["pyodbc"]
 mssql_pymssql = ["pymssql"]
 mssql_pyodbc = ["pyodbc"]
-mypy = ["sqlalchemy2-stubs", "mypy (>=0.910)"]
-mysql = ["mysqlclient (>=1.4.0,<2)", "mysqlclient (>=1.4.0)"]
+mypy = ["mypy (>=0.910)"]
+mysql = ["mysqlclient (>=1.4.0)"]
 mysql_connector = ["mysql-connector-python"]
-oracle = ["cx_oracle (>=7,<8)", "cx_oracle (>=7)"]
+oracle = ["cx-oracle (>=7)"]
+oracle_oracledb = ["oracledb (>=1.0.1)"]
 postgresql = ["psycopg2 (>=2.7)"]
 postgresql_asyncpg = ["greenlet (!=0.4.17)", "asyncpg"]
-postgresql_pg8000 = ["pg8000 (>=1.16.6)"]
+postgresql_pg8000 = ["pg8000 (>=1.29.1)"]
+postgresql_psycopg = ["psycopg (>=3.0.7)"]
 postgresql_psycopg2binary = ["psycopg2-binary"]
 postgresql_psycopg2cffi = ["psycopg2cffi"]
-pymysql = ["pymysql (<1)", "pymysql"]
+pymysql = ["pymysql"]
 sqlcipher = ["sqlcipher3-binary"]
 
-[[package]]
-name = "testfixtures"
-version = "6.18.3"
-description = "A collection of helpers and mock objects for unit tests and doc tests."
-category = "main"
-optional = false
-python-versions = "*"
-
-[package.extras]
-build = ["setuptools-git", "wheel", "twine"]
-docs = ["sphinx", "zope.component", "sybil", "twisted", "mock", "django (<2)", "django"]
-test = ["pytest (>=3.6)", "pytest-cov", "pytest-django", "zope.component", "sybil", "twisted", "mock", "django (<2)", "django"]
-
-[[package]]
-name = "toml"
-version = "0.10.2"
-description = "Python Library for Tom's Obvious, Minimal Language"
-category = "dev"
-optional = false
-python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
-
 [[package]]
 name = "tomli"
 version = "2.0.1"
 description = "A lil' TOML parser"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 
 [[package]]
 name = "tox"
-version = "3.24.5"
+version = "3.28.0"
 description = "tox is a generic virtualenv management and test command line tool"
-category = "dev"
+category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 
@@ -1455,7 +1487,7 @@ packaging = ">=14"
 pluggy = ">=0.12.0"
 py = ">=1.4.17"
 six = ">=1.14.0"
-toml = ">=0.9.4"
+tomli = {version = ">=2.0.1", markers = "python_version >= \"3.7\" and python_version < \"3.11\""}
 virtualenv = ">=16.0.0,<20.0.0 || >20.0.0,<20.0.1 || >20.0.1,<20.0.2 || >20.0.2,<20.0.3 || >20.0.3,<20.0.4 || >20.0.4,<20.0.5 || >20.0.5,<20.0.6 || >20.0.6,<20.0.7 || >20.0.7"
 
 [package.extras]
@@ -1464,7 +1496,7 @@ testing = ["flaky (>=3.4.0)", "freezegun (>=0.3.11)", "pytest (>=4.0.0)", "pytes
 
 [[package]]
 name = "tqdm"
-version = "4.62.3"
+version = "4.64.1"
 description = "Fast, Extensible Progress Meter"
 category = "main"
 optional = false
@@ -1476,32 +1508,44 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
 [package.extras]
 dev = ["py-make (>=0.1.0)", "twine", "wheel"]
 notebook = ["ipywidgets (>=6)"]
+slack = ["slack-sdk"]
 telegram = ["requests"]
 
 [[package]]
 name = "typing-extensions"
-version = "4.1.1"
-description = "Backported and Experimental Type Hints for Python 3.6+"
+version = "4.4.0"
+description = "Backported and Experimental Type Hints for Python 3.7+"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[[package]]
+name = "uri-template"
+version = "1.2.0"
+description = "RFC 6570 URI Template Processor"
 category = "main"
 optional = false
 python-versions = ">=3.6"
 
+[package.extras]
+dev = ["mypy", "flake8 (<4.0.0)", "flake8-annotations", "flake8-bugbear", "flake8-commas", "flake8-comprehensions", "flake8-continuation", "flake8-datetimez", "flake8-docstrings", "flake8-import-order", "flake8-literal", "flake8-noqa", "flake8-requirements", "flake8-type-annotations", "flake8-use-fstring", "pep8-naming"]
+
 [[package]]
 name = "urllib3"
-version = "1.26.8"
+version = "1.26.14"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4"
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
 
 [package.extras]
-brotli = ["brotlipy (>=0.6.0)"]
-secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "ipaddress"]
+brotli = ["brotlicffi (>=0.8.0)", "brotli (>=1.0.9)", "brotlipy (>=0.6.0)"]
+secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "urllib3-secure-extra", "ipaddress"]
 socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 
 [[package]]
 name = "uvicorn"
-version = "0.17.5"
+version = "0.17.6"
 description = "The lightning-fast ASGI server."
 category = "main"
 optional = false
@@ -1513,29 +1557,28 @@ click = ">=7.0"
 h11 = ">=0.8"
 
 [package.extras]
-standard = ["websockets (>=10.0)", "httptools (>=0.2.0,<0.4.0)", "watchgod (>=0.6)", "python-dotenv (>=0.13)", "PyYAML (>=5.1)", "uvloop (>=0.14.0,!=0.15.0,!=0.15.1)", "colorama (>=0.4)"]
+standard = ["websockets (>=10.0)", "httptools (>=0.4.0)", "watchgod (>=0.6)", "python-dotenv (>=0.13)", "PyYAML (>=5.1)", "uvloop (>=0.14.0,!=0.15.0,!=0.15.1)", "colorama (>=0.4)"]
 
 [[package]]
 name = "virtualenv"
-version = "20.13.1"
+version = "20.18.0"
 description = "Virtual Python Environment builder"
-category = "dev"
+category = "main"
 optional = false
-python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
+python-versions = ">=3.7"
 
 [package.dependencies]
-distlib = ">=0.3.1,<1"
-filelock = ">=3.2,<4"
-platformdirs = ">=2,<3"
-six = ">=1.9.0,<2"
+distlib = ">=0.3.6,<1"
+filelock = ">=3.4.1,<4"
+platformdirs = ">=2.4,<3"
 
 [package.extras]
-docs = ["proselint (>=0.10.2)", "sphinx (>=3)", "sphinx-argparse (>=0.2.5)", "sphinx-rtd-theme (>=0.4.3)", "towncrier (>=21.3)"]
-testing = ["coverage (>=4)", "coverage-enable-subprocess (>=1)", "flaky (>=3)", "pytest (>=4)", "pytest-env (>=0.6.2)", "pytest-freezegun (>=0.4.1)", "pytest-mock (>=2)", "pytest-randomly (>=1)", "pytest-timeout (>=1)", "packaging (>=20.0)"]
+docs = ["furo (>=2022.12.7)", "proselint (>=0.13)", "sphinx-argparse (>=0.4)", "sphinx (>=6.1.3)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=22.12)"]
+test = ["covdefaults (>=2.2.2)", "coverage-enable-subprocess (>=1)", "coverage (>=7.1)", "flaky (>=3.7)", "packaging (>=23)", "pytest-env (>=0.8.1)", "pytest-freezegun (>=0.4.2)", "pytest-mock (>=3.10)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "pytest (>=7.2.1)"]
 
 [[package]]
 name = "watchdog"
-version = "2.1.6"
+version = "2.2.1"
 description = "Filesystem events monitoring"
 category = "main"
 optional = false
@@ -1544,9 +1587,17 @@ python-versions = ">=3.6"
 [package.extras]
 watchmedo = ["PyYAML (>=3.10)"]
 
+[[package]]
+name = "webcolors"
+version = "1.12"
+description = "A library for working with color names and color values formats defined by HTML and CSS."
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
 [[package]]
 name = "wrapt"
-version = "1.13.3"
+version = "1.14.1"
 description = "Module for decorators, wrappers and monkey patching."
 category = "main"
 optional = false
@@ -1554,978 +1605,148 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 
 [[package]]
 name = "zipp"
-version = "3.7.0"
+version = "3.12.1"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
-testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "jaraco.itertools", "func-timeout", "pytest-black (>=0.3.7)", "pytest-mypy"]
+docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "sphinx-lint", "jaraco.tidelift (>=1.4)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "jaraco.itertools", "func-timeout", "jaraco.functools", "more-itertools", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "pytest-flake8"]
 
 [metadata]
 lock-version = "1.1"
 python-versions = "^3.9"
-content-hash = "b9e651ad399edf36f8bc8ce8def47ad969cecacae24fab74b39013fc497f4916"
+content-hash = "e5a791b127d924cd27bb3973d5f0e139bdd48c43a8c6c8aa70abf9ab1008b482"
 
 [metadata.files]
-alabaster = [
-    {file = "alabaster-0.7.12-py2.py3-none-any.whl", hash = "sha256:446438bdcca0e05bd45ea2de1668c1d9b032e1a9154c2c259092d77031ddd359"},
-    {file = "alabaster-0.7.12.tar.gz", hash = "sha256:a661d72d58e6ea8a57f7a86e37d86716863ee5e92788398526d58b26a4e4dc02"},
-]
-antlr4-python3-runtime = [
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-]
-zipp = [
-    {file = "zipp-3.7.0-py3-none-any.whl", hash = "sha256:b47250dd24f92b7dd6a0a8fc5244da14608f3ca90a5efcd37a3b1642fac9a375"},
-    {file = "zipp-3.7.0.tar.gz", hash = "sha256:9f50f446828eb9d45b267433fd3e9da8d801f614129124863f9c51ebceafb87d"},
-]
+alabaster = []
+antlr4-python3-runtime = []
+arrow = []
+asgiref = []
+attrs = []
+autopep8 = []
+babel = []
+bcp47 = []
+bioregistry = []
+black = []
+certifi = []
+cfgraph = []
+chardet = []
+charset-normalizer = []
+click = []
+click-log = []
+colorama = []
+commonmark = []
+curies = []
+decorator = []
+deprecated = []
+diskcache = []
+distlib = []
+docopt = []
+docutils = []
+et-xmlfile = []
+exceptiongroup = []
+filelock = []
+fqdn = []
+funowl = []
+git-root = []
+googlemaps = []
+graphviz = []
+greenlet = []
+h11 = []
+hbreader = []
+idna = []
+imagesize = []
+importlib-metadata = []
+inflect = []
+iniconfig = []
+isodate = []
+isoduration = []
+jinja2 = []
+json-flattener = []
+jsonasobj = []
+jsonasobj2 = []
+jsonpatch = []
+jsonpath-ng = []
+jsonpointer = []
+jsonschema = []
+linkml = []
+linkml-dataops = []
+linkml-runtime = []
+markdown-it-py = []
+markupsafe = []
+mdit-py-plugins = []
+mdurl = []
+more-click = []
+mypy-extensions = []
+myst-parser = []
+nmdc-schema = []
+num2words = []
+numpy = []
+openpyxl = []
+packaging = []
+pandas = []
+parse = []
+pathspec = []
+platformdirs = []
+pluggy = []
+ply = []
+prefixcommons = []
+prefixmaps = []
+py = []
+pycodestyle = []
+pydantic = []
+pygments = []
+pyjsg = []
+pyparsing = []
+pyrsistent = []
+pyshex = []
+pyshexc = []
+pystow = []
+pytest = []
+pytest-logging = []
+python-dateutil = []
+python-dotenv = []
+pytrie = []
+pytz = []
+pyyaml = []
+quantulum3 = []
+rdflib = []
+rdflib-jsonld = []
+rdflib-shim = []
+recommonmark = []
+requests = []
+rfc3339-validator = []
+rfc3987 = []
+"ruamel.yaml" = []
+"ruamel.yaml.clib" = []
+shexjsg = []
+six = []
+snowballstemmer = []
+sortedcontainers = []
+sparqlslurper = []
+sparqlwrapper = []
+sphinx = []
+sphinx-click = []
+sphinx-rtd-theme = []
+sphinxcontrib-applehelp = []
+sphinxcontrib-devhelp = []
+sphinxcontrib-htmlhelp = []
+sphinxcontrib-jsmath = []
+sphinxcontrib-qthelp = []
+sphinxcontrib-serializinghtml = []
+sqlalchemy = []
+tomli = []
+tox = []
+tqdm = []
+typing-extensions = []
+uri-template = []
+urllib3 = []
+uvicorn = []
+virtualenv = []
+watchdog = []
+webcolors = []
+wrapt = []
+zipp = []
diff --git a/pyproject.toml b/pyproject.toml
index 0749de1..37d23c2 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -14,13 +14,14 @@ funowl = "^0.1.11"
 git-root = "^0.1"
 googlemaps = "^4.6.0"
 linkml = "^1.1.18"
-nmdc-schema = "^2.0.0"
+nmdc-schema = "^7.0.0"
 pandas = "^1.4.1"
 python = "^3.9"
 quantulum3 = "^0.7.10"
 recommonmark = "^0.7.1"
 sphinx-rtd-theme = "^1.0.0"
 uvicorn = "^0.17.4"
+python-dotenv = "^0.21.1"
 
 
 [tool.poetry.dev-dependencies]
diff --git a/sample_annotator/clients/gold_nmdc_pipeline.py b/sample_annotator/clients/gold_nmdc_pipeline.py
index c568e5c..fdb4789 100644
--- a/sample_annotator/clients/gold_nmdc_pipeline.py
+++ b/sample_annotator/clients/gold_nmdc_pipeline.py
@@ -1,30 +1,40 @@
 import io
-import os
-import re
 import json
-import pkgutil
 import logging
-
+import os
+import pkgutil
+import re
 from typing import Dict, List, Union
 
 import jsonschema
-import pandas as pd
 import nmdc_schema.nmdc as nmdc
-
+import pandas as pd
+import dotenv
+from sample_annotator.clients.nmdc.runtime_api_client import RuntimeApiSiteClient
 from linkml_runtime.dumpers import json_dumper
 from linkml_runtime.linkml_model.types import XSDDateTime
+
 from sample_annotator.clients.gold_client import (
+    ApDict,
     GoldClient,
-    StudyDict,
     ProjectDict,
-    ApDict,
     SampleDict,
+    StudyDict,
+    JSON,
 )
 
+FILE_PATH = Union[str, bytes, os.PathLike]
+
 
 logger = logging.getLogger(__name__)  # module level logger
 
 
+def load_dotenv():
+    env_path = dotenv.find_dotenv()
+    if len(env_path) > 0:
+        dotenv.load_dotenv(dotenv_path=env_path, override=True)
+
+
 class GoldNMDC(GoldClient):
     def __init__(self, study_id: str) -> None:
 
@@ -34,7 +44,28 @@ def __init__(self, study_id: str) -> None:
         # set the GOLD study id
         self.study_id = study_id
 
-    def project_ids_subset(self, path_to_subset_ids: Union[str, bytes, os.PathLike]) -> List[str]:
+        # load nmdc-runtime credentials from environment
+        load_dotenv()
+
+    def _get_client(self) -> RuntimeApiSiteClient:
+        env = dict(os.environ)
+        return RuntimeApiSiteClient(
+            env["BASE_URL"], env["SITE_ID"], env["CLIENT_ID"], env["CLIENT_SECRET"]
+        )
+
+    def _runtime_mint_api_call(
+        self, request_type: str, request_url: str, schema_class: str, how_many: str
+    ) -> JSON:
+        client = self._get_client()
+        return client.request(
+            request_type,
+            request_url,
+            {"schema_class": {"id": schema_class}, "how_many": how_many},
+        ).json()
+
+    def project_ids_subset(
+        self, path_to_subset_ids: Union[str, bytes, os.PathLike]
+    ) -> List[str]:
         """List of GOLD project ids to subset the retreived dataset on.
 
         :return: list of sample project ids in the subset
@@ -79,15 +110,12 @@ def validate_nmdc(
 
         return True
 
-    def project_has_output_dict(self) -> List[Dict[str, str]]:
+    def project_has_output_dict(self, read_qc_path: FILE_PATH) -> List[Dict[str, str]]:
         """Get list of dictionaries as {"projectGoldId": ["has_input_ids"]}
 
+        :param read_qc_path: path to readQC file with input output mapping
         :return: List of dicts
         """
-        read_qc_path = os.path.join(
-            os.path.dirname(os.path.abspath(__file__)), "nmdc", "input", "EMP_soil_readQC.json"
-        )
-
         with open(read_qc_path) as f:
             read_qc_array = json.load(f)
 
@@ -95,7 +123,7 @@ def project_has_output_dict(self) -> List[Dict[str, str]]:
 
         for item in read_qc_array:
             has_output_dict = {}
-            has_output_dict[item["was_informed_by"].replace("gold:", "")] = item[
+            has_output_dict[item["was_informed_by"].replace("GOLD:", "")] = item[
                 "has_input"
             ][0]
             read_qc_list.append(has_output_dict)
@@ -128,13 +156,23 @@ def mod_date_handler(self, nmdc_entry: Dict[str, str]) -> XSDDateTime:
         # use below logic to determine modDate if it is not
         # populated in GOLD
         mod_date = (
-            XSDDateTime(nmdc_entry["addDate"])
+            XSDDateTime(nmdc_entry.get("addDate"))
+            if nmdc_entry["addDate"]
+            else None
             if nmdc_entry["modDate"] is None
             else XSDDateTime(nmdc_entry["modDate"])
         )
 
         return mod_date
 
+    def field_site_parser(self, biosample_name: str) -> str:
+        """Parse out field site information embedded in biosampleName.
+
+        :param biosample_name: biosampleName field from biosample endpoint.
+        :return: field site
+        """
+        return biosample_name.split("-", 1)[1].lstrip()
+
     def _processing_institute_handler(self, sequencing_centers: List[str]) -> List[str]:
         """GOLD NMDC transformation pipeline specific term handler.
         Specific to the ProcessingInstitutionEnum term.
@@ -142,165 +180,320 @@ def _processing_institute_handler(self, sequencing_centers: List[str]) -> List[s
         :param sequencing_centers: List of sequencing centers as stored in GOLD
         :return: NMDC Schema compliant processing institute names
         """
-        nmdc_compliant_seq_ctrs = []
-
+        nmdc_compliant_seq_ctr = ""
         for seq_ctr in sequencing_centers:
             if re.findall(
                 r"University of California[,]? San Diego", seq_ctr, flags=re.IGNORECASE
             ):
-                nmdc_compliant_seq_ctrs.append("UCSD")
+                nmdc_compliant_seq_ctr = "UCSD"
 
             if re.findall(
                 r"Environmental Molecular Sciences Laboratory",
                 seq_ctr,
                 flags=re.IGNORECASE,
             ):
-                nmdc_compliant_seq_ctrs.append("EMSL")
+                nmdc_compliant_seq_ctr = "EMSL"
 
             if re.findall(r"Joint Genome Institute", seq_ctr, flags=re.IGNORECASE):
-                nmdc_compliant_seq_ctrs.append("JGI")
+                nmdc_compliant_seq_ctr = "JGI"
 
-        return nmdc_compliant_seq_ctrs
+        return nmdc_compliant_seq_ctr
 
-    def compute_study_set(self, study_data: StudyDict):
+    def compute_study_set(
+        self, study_data: StudyDict, minted_study_id: str, sub_port_dict: Dict
+    ):
         """Compute study_set parameters to be populated from the dataset."""
         pi_dict = self.get_pi_dict(study_data)
 
+        credit_associations = []
+        if "has_credit_associations" in sub_port_dict:
+            for cred_assoc in sub_port_dict["has_credit_associations"]:
+                credit_associations.append(
+                    nmdc.CreditAssociation(
+                        applied_roles=cred_assoc.get("applied_roles")
+                        if "applied_roles" in cred_assoc
+                        else None,
+                        applies_to_person=nmdc.PersonValue(
+                            name=cred_assoc["applies_to_person"]["name"]
+                            if "name" in cred_assoc["applies_to_person"]
+                            else None,
+                            email=cred_assoc["applies_to_person"]["email"]
+                            if "email" in cred_assoc["applies_to_person"]
+                            else None,
+                            orcid=cred_assoc["applies_to_person"]["orcid"]
+                            if "orcid" in cred_assoc["applies_to_person"]
+                            else None,
+                            profile_image_url=cred_assoc["applies_to_person"][
+                                "profile_image_url"
+                            ]
+                            if "profile_image_url" in cred_assoc["applies_to_person"]
+                            else None,
+                        ),
+                        applied_role=cred_assoc.get("applied_role")
+                        if "applied_role" in cred_assoc
+                        else None,
+                        type=cred_assoc.get("type") if "type" in cred_assoc else None,
+                    )
+                )
+
         self.nmdc_db.study_set.append(
             nmdc.Study(
-                id="gold:" + study_data["studyGoldId"],
-                description=study_data["description"],
-                title=study_data["studyName"],
-                GOLD_study_identifiers="gold:" + study_data["studyGoldId"],
+                id=minted_study_id,
+                description=study_data["description"]
+                if study_data["description"]
+                else None,
+                title=study_data["studyName"] if study_data["studyName"] else None,
+                name=study_data["studyName"] if study_data["studyName"] else None,
+                gold_study_identifiers="GOLD:" + study_data["studyGoldId"],
                 principal_investigator=nmdc.PersonValue(
-                    has_raw_value=pi_dict["name"],
-                    name=pi_dict["name"],
-                    email=pi_dict["email"],
-                ),
+                    has_raw_value=pi_dict.get("name"),
+                    name=pi_dict.get("name"),
+                    email=pi_dict.get("email"),
+                )
+                if "name" and "email" in pi_dict
+                else None,
                 type="nmdc:Study",
+                has_credit_associations=credit_associations,
+                websites=sub_port_dict["websites"]
+                if "websites" in sub_port_dict
+                else None,
+                doi=sub_port_dict["doi"] if "doi" in sub_port_dict else None,
             )
         )
 
     def compute_biosample_set(
-        self, study_data: StudyDict, biosamples: List[str], projects: List[str]
+        self,
+        study_id: str,
+        biosamples: List[Dict[str, Union[str, Dict]]],
+        minted_biosample_ids_dict: Dict[str, str],
+        minted_field_research_site_ids_dict: Dict[str, str],
+        projects: List[str],
+        analysis_projects: List[Dict],
     ) -> SampleDict:
         """Compute biosample parameters to be populated from the dataset."""
         for biosample in biosamples:
             try:
                 mod_date = self.mod_date_handler(biosample)
 
-                # use the logic in if conditional to populate value for
-                # depth, when depth can be retreived from GOLD API
-                if biosample["depthInMeters"] is not None:
-                    depth = nmdc.QuantityValue(
-                        has_raw_value=biosample["depthInMeters"],
-                        has_numeric_value=biosample["depthInMeters"],
-                        has_unit="meter",
+                # retrieve INSDC identifier information using both projects and biosamples
+                insdc_biosample_identifiers = [
+                    "biosample:" + proj["ncbiBioSampleAccession"]
+                    for proj in projects
+                    if proj["ncbiBioSampleAccession"]
+                    and proj["biosampleGoldId"] == biosample["biosampleGoldId"]
+                ]
+
+                # ENVO triad term value handling
+                if biosample["envoBroadScale"] is not None:
+                    env_broad_scale = nmdc.ControlledIdentifiedTermValue(
+                        term=nmdc.OntologyClass(
+                            id=biosample["envoBroadScale"]["id"].replace("_", ":"),
+                            name=biosample["envoBroadScale"]["label"],
+                        ),
+                        has_raw_value=biosample["envoBroadScale"]["id"],
                     )
                 else:
-                    depth = {}
+                    env_broad_scale = None
 
-                if biosample["depthInMeters2"] is not None:
-                    depth2 = nmdc.QuantityValue(
-                        has_raw_value=biosample["depthInMeters2"],
-                        has_numeric_value=biosample["depthInMeters2"],
-                        has_unit="meter",
+                if biosample["envoLocalScale"] is not None:
+                    env_local_scale = nmdc.ControlledIdentifiedTermValue(
+                        term=nmdc.OntologyClass(
+                            id=biosample["envoLocalScale"]["id"].replace("_", ":"),
+                            name=biosample["envoLocalScale"]["label"],
+                        ),
+                        has_raw_value=biosample["envoLocalScale"]["id"],
                     )
                 else:
-                    depth2 = {}
+                    env_local_scale = None
 
-                # retrieve INSDC identifier information using both projects and biosamples
-                insdc_biosample_identifiers = [
-                    "biosample:" + proj["ncbiBioSampleAccession"]
-                    for proj in projects
-                    if proj["biosampleGoldId"] == biosample["biosampleGoldId"]
-                ]
+                if biosample["envoMedium"] is not None:
+                    env_medium = nmdc.ControlledIdentifiedTermValue(
+                        term=nmdc.OntologyClass(
+                            id=biosample["envoMedium"]["id"].replace("_", ":"),
+                            name=biosample["envoMedium"]["label"],
+                        ),
+                        has_raw_value=biosample["envoMedium"]["id"],
+                    )
+                else:
+                    env_medium = None
+
+                ncbi_tax_name = (
+                    biosample.get("ncbiTaxName") if biosample["ncbiTaxName"] else None
+                )
 
+                if ncbi_tax_name:
+                    if biosample["ncbiTaxId"] is not None:
+                        samp_taxon_id = nmdc.TextValue(
+                            (
+                                ncbi_tax_name
+                                + " "
+                                + "[NCBITaxon:"
+                                + str(biosample.get("ncbiTaxId"))
+                                + "]"
+                            )
+                        )
+                else:
+                    samp_taxon_id = None
+
+                # parse site identifier from GOLD
+                field_site = self.field_site_parser(biosample["biosampleName"])
+
+                # there can be multiple IMG identifiers associated with a biosample
+                img_identifiers = []
+                for ap in analysis_projects:
+                    if biosample["biosampleGoldId"] in ap["biosampleGoldId"]:
+                        if ap["imgTaxonOid"] is not None:
+                            img_identifiers.append(ap["imgTaxonOid"])
+                
                 self.nmdc_db.biosample_set.append(
                     nmdc.Biosample(
                         # biosample identifiers
-                        id="gold:" + biosample["biosampleGoldId"],
-                        GOLD_sample_identifiers="gold:" + biosample["biosampleGoldId"],
-                        INSDC_biosample_identifiers=insdc_biosample_identifiers,
-                        
+                        id=minted_biosample_ids_dict[biosample["biosampleGoldId"]],
+                        gold_biosample_identifiers="GOLD:"
+                        + biosample["biosampleGoldId"],
+                        insdc_biosample_identifiers=insdc_biosample_identifiers,
                         # metadata fields
-                        description=biosample["description"],
-                        name=biosample["biosampleName"],
-                        part_of=self.study_id,
-                        ncbi_taxonomy_name=biosample["ncbiTaxName"],
+                        description=biosample.get("description")
+                        if biosample["description"]
+                        else None,
+                        name=biosample.get("biosampleName")
+                        if biosample["biosampleName"]
+                        else None,
+                        part_of=study_id,
+                        ncbi_taxonomy_name=ncbi_tax_name,
+                        samp_taxon_id=samp_taxon_id,
+                        samp_name=nmdc.TextValue(has_raw_value=field_site)
+                        if field_site
+                        else None,
                         type="nmdc:Biosample",
-                        
+                        img_identifiers=img_identifiers,
                         # biosample date information
-                        add_date=XSDDateTime(biosample["addDate"]),
+                        add_date=XSDDateTime(biosample.get("addDate"))
+                        if biosample["addDate"]
+                        else None,
                         collection_date=nmdc.TimestampValue(
-                            has_raw_value=biosample["dateCollected"]
-                        ),
+                            has_raw_value=biosample.get("dateCollected", "")
+                        )
+                        if biosample["dateCollected"]
+                        else None,
                         mod_date=mod_date,
-                        
+                        # environment metadata fields
+                        env_broad_scale=env_broad_scale,
+                        env_local_scale=env_local_scale,
+                        env_medium=env_medium,
                         # Earth fields
-                        depth=depth,
-                        
-                        # TODO: this is temporary non MIxS that can
-                        # hopefully be eliminated sooner rather than later
-                        depth2=depth2,
-                        temp=nmdc.QuantityValue(
-                            has_numeric_value=biosample["sampleCollectionTemperature"]
-                        ),
-                        
+                        depth=nmdc.QuantityValue(
+                            has_raw_value=biosample.get("depthInMeters"),
+                            has_unit="meters",
+                        )
+                        if biosample["depthInMeters"]
+                        else None,
+                        elev=biosample.get("elevationInMeters")
+                        if biosample["elevationInMeters"]
+                        else None,
+                        alt=nmdc.QuantityValue(
+                            has_raw_value=biosample.get("altitudeInMeters"),
+                            has_unit="meters",
+                        )
+                        if biosample["altitudeInMeters"]
+                        else None,
+                        subsurface_depth=nmdc.QuantityValue(
+                            has_raw_value=biosample.get("subsurfaceDepthInMeters"),
+                            has_unit="meters",
+                        )
+                        if biosample["subsurfaceDepthInMeters"]
+                        else None,
+                        # chemical metadata fields
+                        diss_oxygen=nmdc.QuantityValue(
+                            has_raw_value=biosample.get("oxygenConcentration")
+                        )
+                        if biosample["oxygenConcentration"]
+                        else None,
+                        nitrite=nmdc.QuantityValue(
+                            has_raw_value=biosample.get("nitrateConcentration")
+                        )
+                        if biosample["nitrateConcentration"]
+                        else None,
+                        ph=biosample.get("ph") if biosample["ph"] else None,
+                        pressure=nmdc.QuantityValue(
+                            has_raw_value=biosample.get("pressure")
+                        )
+                        if biosample["pressure"]
+                        else None,
                         # ecosystem collected from fields
-                        ecosystem=biosample["ecosystem"],
-                        ecosystem_category=biosample["ecosystemCategory"],
-                        ecosystem_subtype=biosample["ecosystemSubtype"],
-                        ecosystem_type=biosample["ecosystemType"],
-                        specific_ecosystem=biosample["specificEcosystem"],
-                        
+                        ecosystem=biosample.get("ecosystem")
+                        if biosample["ecosystem"]
+                        else None,
+                        ecosystem_category=biosample.get("ecosystemCategory")
+                        if biosample["ecosystemCategory"]
+                        else None,
+                        ecosystem_subtype=biosample.get("ecosystemSubtype")
+                        if biosample["ecosystemSubtype"]
+                        else None,
+                        ecosystem_type=biosample.get("ecosystemType")
+                        if biosample["ecosystemType"]
+                        else None,
+                        specific_ecosystem=biosample.get("specificEcosystem")
+                        if biosample["specificEcosystem"]
+                        else None,
                         # collection site metadata
-                        geo_loc_name=nmdc.TextValue(has_raw_value=biosample["geoLocation"]),
-                        lat_lon=nmdc.GeolocationValue(
-                            has_raw_value=str(biosample["latitude"])
+                        geo_loc_name=nmdc.TextValue(
+                            has_raw_value=biosample.get("geoLocation")
+                        )
+                        if biosample["geoLocation"]
+                        else None,
+                        lat_lon=nmdc.TextValue(
+                            has_raw_value=str(biosample.get("latitude"))
                             + " "
-                            + str(biosample["longitude"]),
-                            latitude=biosample["latitude"],
-                            longitude=biosample["longitude"],
-                        ),
-                        habitat=biosample["habitat"],
-                        location=biosample["isoCountry"],
-                        
+                            + str(biosample.get("longitude"))
+                        )
+                        if biosample["latitude"] and biosample["longitude"]
+                        else None,
+                        habitat=biosample.get("habitat")
+                        if biosample["habitat"]
+                        else None,
+                        location=biosample.get("isoCountry")
+                        if biosample["isoCountry"]
+                        else None,
                         # collection metadata fields
-                        host_name=biosample["hostName"],
-                        sample_collection_site=biosample["sampleBodySite"],
-                        
-                        # chemical metadata fields
-                        nitrate=nmdc.QuantityValue(
-                            has_numeric_value=biosample["nitrateConcentration"]
-                        ),
-                        salinity=nmdc.QuantityValue(
-                            has_numeric_value=biosample["salinityConcentration"]
-                        ),
-                        
-                        # environment metadata fields
-                        env_broad_scale=nmdc.ControlledTermValue(
-                            has_raw_value=biosample["envoBroadScale"]["id"].replace(
-                                "_", ":"
-                            )
-                        ),
-                        env_local_scale=nmdc.ControlledTermValue(
-                            has_raw_value=biosample["envoLocalScale"]["id"].replace(
-                                "_", ":"
+                        host_name=biosample.get("hostName")
+                        if biosample["hostName"]
+                        else None,
+                        host_taxid=nmdc.TextValue(
+                            has_raw_value=biosample.get("hostNcbiTaxid")
+                        )
+                        if biosample["hostNcbiTaxid"]
+                        else None,
+                        temp=nmdc.QuantityValue(
+                            has_numeric_value=biosample.get(
+                                "sampleCollectionTemperature"
                             )
-                        ),
-                        env_medium=nmdc.ControlledTermValue(
-                            has_raw_value=biosample["envoMedium"]["id"].replace("_", ":")
-                        ),
-                        sample_link="gold:" + study_data["studyGoldId"],
+                        )
+                        if biosample["sampleCollectionTemperature"]
+                        else None,
+                        sample_collection_site=biosample.get("sampleCollectionSite")
+                        if biosample["sampleCollectionSite"]
+                        else biosample.get("sampleBodySite")
+                        if biosample["sampleBodySite"]
+                        else None,
+                        collected_from=minted_field_research_site_ids_dict[
+                            biosample["biosampleGoldId"]
+                        ],
                     )
                 )
-            except:
+            except Exception as e:
                 logger.error(
-                    f"Biosample not properly annotated: {biosample['biosampleGoldId']}"
+                    f"Biosample not properly annotated: {biosample['biosampleGoldId']}\n"
+                    f"Reason: {e}"
                 )
 
-    def compute_project_set(self, projects: List[str]) -> ProjectDict:
+    def compute_project_set(
+        self,
+        study_id: str,
+        projects: List[Dict[str, Union[str, Dict]]],
+        minted_biosample_ids_dict: Dict[str, str],
+        minted_project_ids_dict: Dict[str, str],
+    ) -> ProjectDict:
         """Compute sequencing project parameters to be populated from the dataset."""
         for project in projects:
             try:
@@ -308,42 +501,75 @@ def compute_project_set(self, projects: List[str]) -> ProjectDict:
 
                 mod_date = self.mod_date_handler(project)
 
-                project_has_output_dict = self.project_has_output_dict()
+                read_qc_path = os.path.join(
+                    os.path.dirname(os.path.abspath(__file__)),
+                    "nmdc",
+                    "input",
+                    "EMP_soil_readQC.json",
+                )
+
+                project_has_output_dict = self.project_has_output_dict(
+                    read_qc_path=read_qc_path
+                )
 
                 # create value for has_output attribute
-                if project["projectGoldId"] in self.project_has_output_dict():
+                if project["projectGoldId"] in self.project_has_output_dict(
+                    read_qc_path=read_qc_path
+                ):
                     has_output = project_has_output_dict[project["projectGoldId"]]
+                else:
+                    # logger message indicating that has_output cannot be computed
+                    # fix for warning: readQC file needs to provided for computation
+                    # of this value
+                    logger.warning(
+                        f"readQC input output mapping file not provided for {project['projectGoldId']}"
+                    )
+                    has_output = None
 
                 self.nmdc_db.omics_processing_set.append(
                     nmdc.OmicsProcessing(
                         # omics processing metadata
-                        id="gold:" + project["projectGoldId"],
-                        name=project["projectName"],
-                        GOLD_sequencing_project_identifiers="gold:"
-                        + project["projectGoldId"],
-                        ncbi_project_name=project["projectName"],
+                        id=minted_project_ids_dict[project["projectGoldId"]],
+                        name=project.get("projectName")
+                        if project["projectName"]
+                        else None,
+                        gold_sequencing_project_identifiers="GOLD:"
+                        + project["projectGoldId"]
+                        if project["projectGoldId"]
+                        else None,
+                        ncbi_project_name=project.get("projectName")
+                        if project["projectName"]
+                        else None,
                         type="nmdc:OmicsProcessing",
-                        has_input="gold:" + project["biosampleGoldId"],
+                        has_input=minted_biosample_ids_dict[project["biosampleGoldId"]],
                         has_output=has_output,
-                        part_of=self.study_id,
-                        
+                        part_of=study_id,
                         # omics processing date fields
-                        add_date=XSDDateTime(project["addDate"]),
+                        add_date=XSDDateTime(project.get("addDate"))
+                        if project["addDate"]
+                        else None,
                         mod_date=mod_date,
                         principal_investigator=nmdc.PersonValue(
-                            has_raw_value=pi_dict["name"],
-                            name=pi_dict["name"],
-                            email=pi_dict["email"],
-                        ),
-                        
+                            has_raw_value=pi_dict.get("name"),
+                            name=pi_dict.get("name"),
+                            email=pi_dict.get("email"),
+                        )
+                        if "name" and "email" in pi_dict
+                        else None,
                         # sequencing details fields
                         omics_type=nmdc.ControlledTermValue(
-                            has_raw_value=project["sequencingStrategy"]
-                        ),
-                        instrument_name=project["itsSequencingProductName"],
+                            has_raw_value=project.get("sequencingStrategy")
+                        )
+                        if project["sequencingStrategy"]
+                        else None,
+                        instrument_name=project.get("seqMethod")[0]
+                        if project["seqMethod"]
+                        else None,
                         processing_institution=self._processing_institute_handler(
                             project["sequencingCenters"]
-                        )[0],
+                        )
+                        if project["sequencingCenters"]
+                        else None,
                     )
                 )
             except:
@@ -361,36 +587,36 @@ def compute_analysis_project_set(self, analysis_projects: List[str]) -> ApDict:
             if re.search("Metagenome Analysis", ap["apType"], re.IGNORECASE):
                 self.nmdc_db.metagenome_annotation_activity_set.append(
                     nmdc.MetagenomeAnnotationActivity(
-                        id="gold:" + ap["apGoldId"],
+                        id="nmdc:" + ap["apGoldId"],
                         name=ap["apName"],
-                        part_of="gold:" + self.study_id,
+                        part_of="nmdc:" + self.study_id,
                         execution_resource="",
                         git_url="",
-                        has_input=["gold:" + ap_i for ap_i in ap["projects"]],
-                        has_output="gold:" + ap["apGoldId"],
+                        has_input=["nmdc:" + ap_i for ap_i in ap["projects"]],
+                        has_output="nmdc:" + ap["apGoldId"],
                         type=ap["apType"],
                         started_at_time=XSDDateTime(ap["addDate"]),
                         ended_at_time=XSDDateTime(mod_date),
                         was_informed_by="",
-                        GOLD_analysis_project_identifiers="gold:" + ap["apGoldId"],
+                        gold_analysis_project_identifiers="GOLD:" + ap["apGoldId"],
                     )
                 )
 
             if re.search("Metatranscriptome Analysis", ap["apType"], re.IGNORECASE):
                 self.nmdc_db.metatranscriptome_activity_set.append(
                     nmdc.MetatranscriptomeAnnotationActivity(
-                        id="gold:" + ap["apGoldId"],
+                        id="nmdc:" + ap["apGoldId"],
                         name=ap["apName"],
-                        part_of="gold:" + self.study_id,
+                        part_of="nmdc:" + self.study_id,
                         execution_resource="",
                         git_url="",
-                        has_input=["gold:" + ap_i for ap_i in ap["projects"]],
-                        has_output="gold:" + ap["apGoldId"],
+                        has_input=["nmdc:" + ap_i for ap_i in ap["projects"]],
+                        has_output="nmdc:" + ap["apGoldId"],
                         type=ap["apType"],
                         started_at_time=XSDDateTime(ap["addDate"]),
                         ended_at_time=XSDDateTime(mod_date),
                         was_informed_by="",
-                        GOLD_analysis_project_identifiers="gold:" + ap["apGoldId"],
+                        gold_analysis_project_identifiers="GOLD:" + ap["apGoldId"],
                     )
                 )
 
@@ -406,28 +632,35 @@ def transform_gold_nmdc(
         :return: JSON string
         """
         projects = self.fetch_projects_by_study(self.study_id)
-        
+
         biosamples = self.fetch_biosamples_by_study(self.study_id)
 
         analysis_projects = self.fetch_analysis_projects_by_study(self.study_id)
 
         path_to_subset_ids = os.path.join(
-            os.path.dirname(os.path.abspath(__file__)), "nmdc", "input", "project_ids_subset.txt"
+            os.path.dirname(os.path.abspath(__file__)),
+            "nmdc",
+            "input",
+            "project_ids_subset.txt",
         )
 
         projects_subset = self.project_ids_subset(path_to_subset_ids)
 
         if projects_subset:
             # subsetted list of projects filtered
-            projects = [proj for proj in projects if proj["projectGoldId"] in projects_subset]
-            
+            projects = [
+                proj for proj in projects if proj["projectGoldId"] in projects_subset
+            ]
+
             biosamples_subset = [proj["biosampleGoldId"] for proj in projects]
 
             # subsetted list of biosamples filtered
             biosamples = [
-                samp for samp in biosamples if samp["biosampleGoldId"] in biosamples_subset
+                samp
+                for samp in biosamples
+                if samp["biosampleGoldId"] in biosamples_subset
             ]
-        
+
             # subsetted list of analysis projects filtered
             analysis_projects = [
                 ap
@@ -435,15 +668,85 @@ def transform_gold_nmdc(
                 if any(e in projects_subset for e in ap["projects"])
             ]
 
+        minted_study_id = self._runtime_mint_api_call(
+            "POST", "/pids/mint", "nmdc:Study", 1
+        )
         study_data = self.fetch_study(id=self.study_id)
 
-        self.compute_study_set(study_data)
+        study_data_portal = (
+            self._get_client().request("GET", f"/studies/gold:{self.study_id}").json()
+        )
+        self.compute_study_set(study_data, minted_study_id[0], study_data_portal)
 
-        self.compute_biosample_set(study_data, biosamples, projects)
+        minted_biosample_ids = self._runtime_mint_api_call(
+            "POST", "/pids/mint", "nmdc:Biosample", len(biosamples)
+        )
+        gold_biosample_ids = [biosample["biosampleGoldId"] for biosample in biosamples]
+        minted_biosample_ids_dict = dict(zip(gold_biosample_ids, minted_biosample_ids))
+
+        # code block ensuring that a FieldResearchSite id is associated with
+        # all biosamples from the same site
+        site_ids = [
+            {
+                biosample["biosampleGoldId"]: self.field_site_parser(
+                    biosample["biosampleName"]
+                ).split(" ")[0]
+            }
+            for biosample in biosamples
+        ]
+        gold_site_ids_dict = {}
+        site_vals_list = []
+        for site in site_ids:
+            for gb, site_id in site.items():
+                gold_site_ids_dict[gb] = site_id
+                site_vals_list.append(site_id)
+        site_vals_list = set(site_vals_list)
+        minted_field_research_site_ids = self._runtime_mint_api_call(
+            "POST", "/pids/mint", "nmdc:FieldResearchSite", len(site_vals_list)
+        )
+        site_ids_dict = dict(zip(site_vals_list, minted_field_research_site_ids))
+        gold_biosample_ids = [biosample["biosampleGoldId"] for biosample in biosamples]
+        minted_field_research_site_ids_dict = {
+            k: site_ids_dict.get(v, v) for k, v in gold_site_ids_dict.items()
+        }
 
-        self.compute_project_set(projects)
+        minted_project_ids = self._runtime_mint_api_call(
+            "POST", "/pids/mint", "nmdc:OmicsProcessing", len(projects)
+        )
+        gold_project_ids = [project["projectGoldId"] for project in projects]
+        minted_project_ids_dict = dict(zip(gold_project_ids, minted_project_ids))
+
+        # refactor: nested loop to associate analysis project information with biosample
+        # reason: individual API calls to analysis_projects endpoint with biosample id as
+        # query parameter are expensive
+        for ga in analysis_projects:
+            for gb in biosamples:
+                for gp_a in ga["projects"]:
+                    for gp_b in gb["projects"]:
+                        if gp_a == gp_b["projectGoldId"]:
+                            if "biosampleGoldId" in ga:
+                                ga["biosampleGoldId"].append(gb["biosampleGoldId"])
+                            else:
+                                ga["biosampleGoldId"] = gb["biosampleGoldId"]
+
+        self.compute_biosample_set(
+            minted_study_id[0],
+            biosamples,
+            minted_biosample_ids_dict,
+            minted_field_research_site_ids_dict,
+            projects,
+            analysis_projects,
+        )
+
+        # TODO: enable if you want to pull sequencing project information from GOLD
+        self.compute_project_set(
+            minted_study_id[0],
+            projects,
+            minted_biosample_ids_dict,
+            minted_project_ids_dict,
+        )
 
-        # nit: enable if you want to pull AP information from GOLD
+        # TODO: enable if you want to pull AP information from GOLD
         # self.compute_analysis_project_set(analysis_projects)
 
         # dump JSON string serialization of NMDC Schema object
diff --git a/sample_annotator/clients/nmdc/runtime_api_client.py b/sample_annotator/clients/nmdc/runtime_api_client.py
new file mode 100644
index 0000000..49aa594
--- /dev/null
+++ b/sample_annotator/clients/nmdc/runtime_api_client.py
@@ -0,0 +1,60 @@
+from datetime import datetime, timezone, timedelta
+
+import requests
+from pydantic import BaseModel
+
+def now(as_str=False):
+    dt = datetime.now(timezone.utc)
+    return dt.isoformat() if as_str else dt
+
+
+def expiry_dt_from_now(days=0, hours=0, minutes=0, seconds=0):
+    return now() + timedelta(days=days, hours=hours, minutes=minutes, seconds=seconds)
+
+
+def has_passed(dt):
+    return now() > dt
+
+class RuntimeApiSiteClient:
+    def __init__(self, base_url: str, site_id: str, client_id: str, client_secret: str):
+        self.base_url = base_url
+        self.site_id = site_id
+        self.client_id = client_id
+        self.client_secret = client_secret
+        self.headers = {}
+        self.token_response = None
+        self.refresh_token_after = None
+        self.get_token()
+
+    def request(self, method, url_path, params_or_json_data=None):
+        self.ensure_token()
+        kwargs = {"url": self.base_url + url_path, "headers": self.headers}
+        if isinstance(params_or_json_data, BaseModel):
+            params_or_json_data = params_or_json_data.dict(exclude_unset=True)
+        if method.upper() == "GET":
+            kwargs["params"] = params_or_json_data
+        else:
+            kwargs["json"] = params_or_json_data
+        return requests.request(method, **kwargs)
+
+    def get_token(self):
+        rv = requests.post(
+            self.base_url + "/token",
+            data={
+                "grant_type": "client_credentials",
+                "client_id": self.client_id,
+                "client_secret": self.client_secret,
+            },
+        )
+        self.token_response = rv.json()
+        if "access_token" not in self.token_response:
+            raise Exception(f"Getting token failed: {self.token_response}")
+
+        self.headers["Authorization"] = f'Bearer {self.token_response["access_token"]}'
+        self.refresh_token_after = expiry_dt_from_now(
+            **self.token_response["expires"]
+        ) - timedelta(seconds=5)
+
+    def ensure_token(self):
+        if has_passed(self.refresh_token_after):
+            self.get_token()
\ No newline at end of file
diff --git a/sample_annotator/clients/src/clients/submission_portal_client.py b/sample_annotator/clients/src/clients/submission_portal_client.py
new file mode 100644
index 0000000..17d323c
--- /dev/null
+++ b/sample_annotator/clients/src/clients/submission_portal_client.py
@@ -0,0 +1,249 @@
+import pandas as pd
+import nmdc_schema.nmdc as nmdc
+import linkml
+import numpy as np
+import linkml_runtime.dumpers.json_dumper as dumper
+
+
+#I had initially misunderstood, and did not design the code as part of an class/object so these are mostly
+#independent functions that I've added to this overarching class
+
+#API things are still missing as I only just got access to them ~1 hour before pushing this code up
+class submission_portal_client:
+    
+    #params:
+    #mapping_path: file path to mappings between column names
+    #env_path: path to env file with API information (not used yet)
+    def __init__(self,mapping_path,env_path):
+        self.mapping_path = mapping_path
+        self.env_path = env_path
+        
+    #creates a dictionary of the mappings between columns based on the given file
+    #returns: dictionary where the key is the column name from the NMDC portal and the value is the bioSample column name
+    def create_mapping_dict(self):
+        f = open(self.mapping_path, "r")
+        line = f.readline()
+
+        #key and value lists
+        map_dict = {}
+        #collecting keys and values from file
+        while(line != ""):
+            pair = line.split(",")
+            map_dict[pair[0]] = pair[1].replace("\n","")
+            #replacing new line characters with blanks
+            line = f.readline()
+        f.close()
+
+        return map_dict
+    
+    # I know we are intending to use the json response from the API, but I havent' been able to use the API
+    # For the mean time I've saved the example data in a json file and read that in. 
+    # This could be adjusted for the api response with a little tweaking
+    #params:
+    #data_path: path to the json formatted data file.
+    #returns: pandas dataframe
+    def read_data_file(self,data_path):
+        f = open(data_path, "r")
+        line = f.readline()
+        rows = []
+
+        #skip through everything that isn't sampleData, we don't need it here
+        while('"sampleData": [' not in line):
+            line = f.readline()
+
+        #reads until we hit the } denoting the closing of the sampleData block
+        line = f.readline()
+        while('}' not in line):
+            temp_lis = []
+
+            #collecting each row of data, multiple lines per row
+            while(']' not in line):
+                if(line.strip() != '['):
+                    #removing white space, trailing commas, quotation marks
+                    line = line.strip().strip('"').strip(",").strip('"')
+                    if (line == "depth, meters"):
+                        #this comma will mess up the dictionary creation for the map so we remove it here
+                        line = "depth meters"
+                    elif("GMT" in line):
+                        #removing commas again for the dictionary
+                        line = line.replace(",","")
+                    elif("region" in line):
+                        line = line.replace(","," ")
+
+                    temp_lis.append(line)
+                line = f.readline()
+            line = f.readline()
+
+            #appending the row to the list of rows
+            rows.append(temp_lis)
+
+        #The first row isn't useful for our mongoDB ingestion, so we skip over it
+        rows.pop()
+
+        #converitng to dataframe
+        df = pd.DataFrame(rows[2:len(rows)],columns = rows[1])
+
+        f.close()
+        return df
+        
+    # creates an NMDC database populated with biosamples baed on given mappings and dataframe
+    # params:
+    # map_dict: dictionary mapping the column names from the NMDC portal and the BioSample columns
+    # df: a pandas dataframe created form NMDC portal data
+    # returns: an NMDC database object
+    def create_biosample_set(self, map_dict, df):
+        db = nmdc.Database()
+
+        #Lists for what each value should be converted to. Strings stay as they are, the rest have a function call associated
+        #These are all the columns from the example data. It would probably be better to have these in a file and read that in (maybe add a step to the mapping read in to do that at the same time)
+        #That is an issue to fix if there is time
+        string_params = ["sample name","globally unique ID","analysis/data type","sample linkage","ecosystem","ecosystem_category",
+                        "ecosystem_type","ecosystem_subtype","specific_ecosystem","history/extreme events","soil_taxonomic/FAO classification",
+                        "history/fire","history/flooding","oxygenation status of sample","history/previous land use method",
+                        "soil horizon","soil texture method","history/tillage","water content","water content method","microbial biomass method",
+                        "total nitrogen content method","sample collection device","sample collection method","observed biotic relationshiop",
+                        "relationship to oxygen","collection time GMT","incubation collection date","incubation collection time GMT",
+                        "incubation start date","incubation start time GMT","filter method","experimental factor- other","non-microbial biomass",
+                        "non-microbial biomass method","microbial biomass carbon","microbial biomass carbon method","microbial biomass nitrogen",
+                        "microbial biomass nitrogen method","organic nitrogen method","other treatments","isotope exposure/addition"]
+
+        text_params = ['environmental package', 'history/agrochemical additions', 'extreme_unusual_properties/Al saturation method', 
+                       'history/crop rotation', 'current vegetation', 'current vegetation method', 'extreme_unusual_properties/heavy metals', 
+                       'extreme_unusual_properties/heavy metals method', 'horizon method', 'link to classification information', 
+                       'link to climate information', 'soil_taxonomic/local classification', 'miscellaneous parameter', 
+                       'soil_taxonomic/local classification method', 'history/previous land use', 'soil type', 'soil type method', 'pH method', 
+                       'total organic carbon method', 'salinity method', 'storage conditions', 'geographic location (country and/or sea region)', 
+                       'composite design/sieving', 'biotic regimen', 'air temperature regimen', 'climate environment', 'gaseous environment', 
+                       'humidity regimen', 'light regimen', 'watering regimen']
+
+        quantity_params = ['slope aspect', 'extreme_unusual_properties/Al saturation', 'mean annual precipitation', 'mean annual temperature', 
+                           'mean seasonal precipitation', 'mean seasonal temperature', 'slope gradient', 'soil texture measurement', 
+                           'temperature', 'microbial biomass', 'carbon/nitrogen ratio', 'organic matter', 'organic nitrogen', 'total carbon', 
+                           'total nitrogen content', 'total organic carbon', 'total phosphorus', 'phosphate', 'salinity', 'sample storage temperature', 
+                           'size-fraction lower threshold', 'depth meters', 'size-fraction upper threshold', 'amount or size of sample collected', 'altitude']
+
+        controlled_term_params = ['broad-scale environmental context', 'local environmental context', 'environmental medium', 'experimental factor', 
+                                  'growth facility', 'sample material processing', 'chemical administration']
+
+        float_params = ["elevation","pH"]
+
+        time_params = ["collection date"]
+
+        geoloc_params = ['geographic location (latitude and longitude)']
+
+        #iterating through each row/sample
+        for index, row in df.iterrows():
+            param_dic = {}
+
+            #doing necessary conversions and filtering of each column/slot
+            for col in df.columns:
+                if (row[col] == 'null' or row[col] == 'nan' or row[col] == None):
+                    continue
+
+                if (col in string_params):
+                    if (col == 'globally unique ID'):
+                        key = map_dict[col]
+                        param_dic[key] = '0' #need to mint an nmdc unique ID here via the API
+                        param_dic['alternative_identifiers'] = row[col] #this vlue might need to be different than 'alternative_identifiers'
+
+                    else:
+                        key = map_dict[col]
+                        if(";" in row[col]):
+                            temp = row[col].split(";")
+                        else:
+                            temp = row[col]
+
+                        param_dic[key] = temp
+
+                elif (col in controlled_term_params):
+                    #need to add some kind of processing for the environmental context params
+                    #look at the ontology class documentation as well for what params are used
+
+                    #convert then add to dictionary
+                    temp = nmdc.ControlledTermValue(term=nmdc.OntologyClass(id=row[col]))
+                    key = map_dict[col]
+                    param_dic[key] = temp
+
+                elif (col in text_params):
+                    #some may need some processing
+                    temp = nmdc.TextValue(has_raw_value=row[col])
+                    key = map_dict[col]
+                    param_dic[key] = temp
+
+                elif (col in quantity_params):
+                    #some may need some additional processing
+                    if(col == "sample storage temperature"):
+                        temp_lis = row[col].split()
+                        temp = nmdc.QuantityValue(has_raw_value = temp_lis[0],has_unit = temp_lis[1])
+                        key = map_dict[col]
+                        param_dic[key] = temp
+
+                    elif(col == "depth meters"):
+                        depth_lis = row[col].split("-")
+                        if len(depth_lis) != 2:
+                            temp = nmdc.QuantityValue(has_raw_value=row[col])
+                            key = map_dict[col]
+                            param_dic[key] = temp
+                        else:
+                            temp = nmdc.QuantityValue(has_minimum_numeric_value = depth_lis[0],has_maximum_numeric_value = depth_lis[1])
+                            key = map_dict[col]
+                            param_dic[key] = temp
+
+                    else:
+                        temp = nmdc.QuantityValue(has_raw_value=row[col])
+                        key = map_dict[col]
+                        param_dic[key] = temp
+
+                elif (col in float_params):
+                    if(col == 'elevation'):
+                        temp = row[col].split()
+                        elev = float(temp[0])
+                        key = map_dict[col]
+                        param_dic[key] = elev
+                    else:
+                        temp = float(row[col])
+                        key = map_dict[col]
+                        param_dic[key] = temp
+
+                elif (col in time_params):
+                    #may need some processing
+                    temp = nmdc.TimestampValue(has_raw_value=row[col])
+                    key = map_dict[col]
+                    param_dic[key] = temp
+
+                elif (col in geoloc_params):
+                    temp = nmdc.GeolocationValue(has_raw_value=row[col])
+                    key = map_dict[col]
+                    param_dic[key] = temp
+                
+                #if something shows up in the else statement it is missing from the mappings
+                else:
+                    print(col + " not found in any current param list")
+
+            if ('part_of'  not in param_dic.keys()):
+                param_dic['part_of'] = '1000 soils'
+
+            if ('id' not in param_dic.keys()):
+                param_dic['id'] = '0' #mint a key via the api
+
+            #I don't think any of these should be blank in real data, but they are needed here since the example data is blank
+            #this block of code should be removed once real data is in
+            missing_env = [item for item in ["env_broad_scale","env_local_scale","env_medium"] if item not in param_dic.keys()]
+            for item in missing_env:
+                temp = nmdc.ControlledTermValue(term=nmdc.OntologyClass(id="0000"))
+                param_dic[item] = temp
+
+            sample = nmdc.Biosample(**param_dic)
+            db.biosample_set.append(sample)
+            
+        return db
+    
+    #dumps the given database to the given filepath
+    #params:
+    #database: an NMDC database object
+    #outfile_path: a string, filepath for desired output
+    def dump_db(self,database,outfile_path):
+        dumper.dump(element = database, to_file = outfile_path)
+
+    
+    
\ No newline at end of file
diff --git a/sample_annotator/clients/src/example_data.json b/sample_annotator/clients/src/example_data.json
new file mode 100644
index 0000000..fa2169b
--- /dev/null
+++ b/sample_annotator/clients/src/example_data.json
@@ -0,0 +1,90217 @@
+{
+  "metadata_submission": {
+    "packageName": "soil",
+    "template": "soil",
+    "studyForm": {
+      "studyName": "1000 soils ingest copy",
+      "piName": "",
+      "piEmail": "Emily.graham@pnnl.gov",
+      "piOrcid": "",
+      "linkOutWebpage": [],
+      "studyDate": null,
+      "description": "",
+      "notes": "",
+      "contributors": []
+    },
+    "multiOmicsForm": {
+      "datasetDoi": "",
+      "alternativeNames": [],
+      "studyNumber": "",
+      "GOLDStudyId": "",
+      "JGIStudyId": "",
+      "NCBIBioProjectName": "",
+      "NCBIBioProjectId": "",
+      "omicsProcessingTypes": [
+        "mg",
+        "mb",
+        "nom"
+      ]
+    },
+    "sampleData": [
+      [
+        "Sample ID",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "MIxS",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "MIxS (modified)",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "MIxS Inspired",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        "",
+        ""
+      ],
+      [
+        "sample name",
+        "globally unique ID",
+        "analysis/data type",
+        "environmental package",
+        "sample linkage",
+        "broad-scale environmental context",
+        "local environmental context",
+        "environmental medium",
+        "ecosystem",
+        "ecosystem_category",
+        "ecosystem_type",
+        "ecosystem_subtype",
+        "specific_ecosystem",
+        "slope aspect",
+        "history/agrochemical additions",
+        "extreme_unusual_properties/Al saturation",
+        "extreme_unusual_properties/Al saturation method",
+        "mean annual precipitation",
+        "mean annual temperature",
+        "history/crop rotation",
+        "current land use",
+        "current vegetation",
+        "current vegetation method",
+        "drainage classification",
+        "experimental factor",
+        "history/extreme events",
+        "soil_taxonomic/FAO classification",
+        "history/fire",
+        "history/flooding",
+        "extreme_unusual_properties/heavy metals",
+        "extreme_unusual_properties/heavy metals method",
+        "horizon method",
+        "link to classification information",
+        "link to climate information",
+        "soil_taxonomic/local classification",
+        "miscellaneous parameter",
+        "soil_taxonomic/local classification method",
+        "oxygenation status of sample",
+        "history/previous land use method",
+        "history/previous land use",
+        "profile position",
+        "mean seasonal precipitation",
+        "mean seasonal temperature",
+        "slope gradient",
+        "soil horizon",
+        "soil texture measurement",
+        "soil texture method",
+        "soil type",
+        "soil type method",
+        "temperature",
+        "history/tillage",
+        "water content",
+        "water content method",
+        "pH method",
+        "microbial biomass",
+        "microbial biomass method",
+        "carbon/nitrogen ratio",
+        "organic matter",
+        "organic nitrogen",
+        "total carbon",
+        "total nitrogen content",
+        "total nitrogen content method",
+        "total organic carbon",
+        "total organic carbon method",
+        "total phosphorus",
+        "phosphate",
+        "salinity",
+        "salinity method",
+        "growth facility",
+        "storage conditions",
+        "collection date",
+        "geographic location (country and/or sea,region)",
+        "geographic location (latitude and longitude)",
+        "elevation",
+        "sample storage temperature",
+        "composite design/sieving",
+        "size-fraction lower threshold",
+        "depth, meters",
+        "size-fraction upper threshold",
+        "sample material processing",
+        "biotic regimen",
+        "sample collection device",
+        "sample collection method",
+        "air temperature regimen",
+        "chemical administration",
+        "amount or size of sample collected",
+        "climate environment",
+        "gaseous environment",
+        "humidity regimen",
+        "observed biotic relationship",
+        "relationship to oxygen",
+        "light regimen",
+        "watering regimen",
+        "altitude",
+        "pH",
+        "collection time, GMT",
+        "incubation collection date",
+        "incubation collection time, GMT",
+        "incubation start date",
+        "incubation start time, GMT",
+        "filter method",
+        "experimental factor- other",
+        "non-microbial biomass",
+        "non-microbial biomass method",
+        "microbial biomass carbon",
+        "microbial biomass carbon method",
+        "microbial biomass nitrogen",
+        "microbial biomass nitrogen method",
+        "organic nitrogen method",
+        "other treatments",
+        "isotope exposure/addition"
+      ],
+      [
+        "ANZA",
+        null,
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Desert scrub",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "0.049 m3/m3",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        null,
+        "2022-06-06",
+        "USA: California, Anza Borrego Desert State Park",
+        "33.305325, -116.254011",
+        "191 m",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Kit 6",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "08:45  - 12:05 ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "ANZA_CoreA_BTM",
+        "UUID:ANZA-CA-B-8c704021-24ed-4288-a917-21010de9f59f",
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Desert scrub",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "N/A",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        "fresh",
+        "2022-06-06",
+        "USA: California, Anza Borrego Desert State Park",
+        "33.305325, -116.254011",
+        "191 m",
+        "4 Celcius",
+        null,
+        null,
+        ".2-.3",
+        null,
+        null,
+        null,
+        null,
+        "Kit 6",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "08:45  - 12:05 ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "ANZA_CoreA_MID",
+        "UUID:ANZA-CA-M-d7197705-b351-46bc-95d6-8c6967493fbb",
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Desert scrub",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "N/A",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        "fresh",
+        "2022-06-06",
+        "USA: California, Anza Borrego Desert State Park",
+        "33.305325, -116.254011",
+        "191 m",
+        "4 Celcius",
+        null,
+        null,
+        ".1-.2",
+        null,
+        null,
+        null,
+        null,
+        "Kit 6",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "08:45  - 12:05 ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "ANZA_CoreA_TOP",
+        "UUID:ANZA-CA-T-62e34b6a-ad25-4faa-8c02-567174177c4c",
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Desert scrub",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "N/A",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        "fresh",
+        "2022-06-06",
+        "USA: California, Anza Borrego Desert State Park",
+        "33.305325, -116.254011",
+        "191 m",
+        "4 Celcius",
+        null,
+        null,
+        "0-.1",
+        null,
+        null,
+        null,
+        null,
+        "Kit 6",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "08:45  - 12:05 ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "ANZA_CoreB_BTM",
+        "UUID:ANZA-CB-B-6bc68e7d-7383-4bbe-9789-2f897ab426ca",
+        "metagenomics;natural organic matter",
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Desert scrub",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "0.99970423 FW/DW",
+        null,
+        null,
+        null,
+        "Chloroform fumigation direct extraction",
+        "3.213",
+        null,
+        null,
+        "0.15 %",
+        "0.05 %",
+        null,
+        null,
+        null,
+        "0.1 ppm",
+        null,
+        null,
+        null,
+        "field",
+        "frozen",
+        "2022-06-06",
+        "USA: California, Anza Borrego Desert State Park",
+        "33.305325, -116.254011",
+        "191 m",
+        "-80 Celcius",
+        "4mm sieved",
+        null,
+        ".2-.3",
+        null,
+        null,
+        null,
+        null,
+        "Kit 6",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "9.2",
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+        "UUID:CSF1-CA-B-748c1776-1b1f-4a2a-91c2-c0642f447a20",
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+      [
+        "CFS1_CoreA_TOP",
+        "UUID:CSF1-CA-T-675a9337-24ba-41ea-b7b6-84386609dd3c",
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Previously hairy vetch and rye (agriculture), Current state: disked",
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+        null,
+        null,
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+        null,
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+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "N/A",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
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+        null,
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+        "fresh",
+        "2022-04-04",
+        "USA: North Carolina, Organic legume disk tillage",
+        "35.3828, -78.03818",
+        "24 m",
+        "4 Celcius",
+        null,
+        null,
+        "0-.1",
+        null,
+        null,
+        null,
+        null,
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+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
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+        null,
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+        null,
+        null,
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+        null,
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+        null,
+        null
+      ],
+      [
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+        "UUID:CSF1-CB-B-1171add7-ad79-4c39-9e8f-977fdf0fc9e8",
+        "metagenomics;natural organic matter",
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
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+        null,
+        null,
+        null,
+        null,
+        null,
+        "1.118321938 FW/DW",
+        null,
+        null,
+        null,
+        "Chloroform fumigation direct extraction",
+        "6.014",
+        null,
+        null,
+        "0.43 %",
+        "0.07 %",
+        null,
+        null,
+        null,
+        "3 ppm",
+        null,
+        null,
+        null,
+        "field",
+        "frozen",
+        "2022-04-04",
+        "USA: North Carolina, Organic legume disk tillage",
+        "35.3828, -78.03818",
+        "24 m",
+        "-80 Celcius",
+        "4mm sieved",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
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+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
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+        "UUID:CSF1-CB-M-2a3c46ac-4d63-4815-85aa-8bc6ed377b06",
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
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+        null,
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+        null,
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+        null,
+        null,
+        null,
+        null,
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+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
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+        null,
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+        null,
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+        null,
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+        "-80 Celcius",
+        "4mm sieved",
+        null,
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+        null,
+        null,
+        null,
+        null,
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+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
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+        null
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+        "UUID:CSF1-CB-T-8e2cab37-6db5-4377-8eab-293a58400041",
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+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
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+        null,
+        null,
+        null,
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+        null,
+        null,
+        null,
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+        "8.657",
+        null,
+        null,
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+        "0.14 %",
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+        null,
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+        null,
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+        "-80 Celcius",
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+        null,
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+        null,
+        null,
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+        null,
+        null,
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+        null,
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+        "N/A",
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+        "2022-04-04",
+        "USA: North Carolina, Organic legume disk tillage",
+        "35.38329, -81.434174",
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+        "2022-04-04",
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+        "USA: Maryland, Northwest Baltimore Mid Slope Adelphi",
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+        "UUID:NWBB-CA-B-c3a0392c-1d46-4554-8d38-0ffdee7a2b74",
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+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "OKPF",
+        null,
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Oak pine woodland. Tree (canopy) layer vegetation: Pirus strobus (white pine), Pinus rigida (pitch pine), Quercus alba (white oak), Quercus velutina (black oak). Understory: Gaylussacia baccata (huckleberry). ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "0.248 m3/m3 // 0.187 m3/m3",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        null,
+        "2021-11-29",
+        "USA: Massachusetts, Oak Pine Forest",
+        "41.551919, -70.635356",
+        "1 m",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "9:54",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "OKPF_CoreA_BTM",
+        "UUID:OKPF-CA-B-f1d8ce40-e5be-4d89-bf9b-7e465b539ae0",
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Oak pine woodland. Tree (canopy) layer vegetation: Pirus strobus (white pine), Pinus rigida (pitch pine), Quercus alba (white oak), Quercus velutina (black oak). Understory: Gaylussacia baccata (huckleberry). ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "N/A",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        "fresh",
+        "2021-11-29",
+        "USA: Massachusetts, Oak Pine Forest",
+        "41.551919, -70.635356",
+        "1 m",
+        "4 Celcius",
+        null,
+        null,
+        ".16-.26",
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "9:54",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "OKPF_CoreA_MID",
+        "UUID:OKPF-CA-M-e52a26e0-a947-4f99-afa6-472b8ba683f5",
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Oak pine woodland. Tree (canopy) layer vegetation: Pirus strobus (white pine), Pinus rigida (pitch pine), Quercus alba (white oak), Quercus velutina (black oak). Understory: Gaylussacia baccata (huckleberry). ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "N/A",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        "fresh",
+        "2021-11-29",
+        "USA: Massachusetts, Oak Pine Forest",
+        "41.551919, -70.635356",
+        "1 m",
+        "4 Celcius",
+        null,
+        null,
+        ".1-.16",
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "9:54",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "OKPF_CoreA_TOP",
+        "UUID:OKPF-CA-T-dfa4dee1-0589-4893-8c70-82a5cfe2dbd1",
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Oak pine woodland. Tree (canopy) layer vegetation: Pirus strobus (white pine), Pinus rigida (pitch pine), Quercus alba (white oak), Quercus velutina (black oak). Understory: Gaylussacia baccata (huckleberry). ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "N/A",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        "fresh",
+        "2021-11-29",
+        "USA: Massachusetts, Oak Pine Forest",
+        "41.551919, -70.635356",
+        "1 m",
+        "4 Celcius",
+        null,
+        null,
+        "0-.1",
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "9:54",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "OKPF_CoreB_BTM",
+        "UUID:OKPF-CB-B-d7417aa2-8ef2-4dfe-a655-4c535ec5a5b3",
+        "metagenomics;natural organic matter",
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Oak pine woodland. Tree (canopy) layer vegetation: Pirus strobus (white pine), Pinus rigida (pitch pine), Quercus alba (white oak), Quercus velutina (black oak). Understory: Gaylussacia baccata (huckleberry). ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Chloroform fumigation direct extraction",
+        "16.278",
+        null,
+        null,
+        "1.58 %",
+        "0.10 %",
+        null,
+        null,
+        null,
+        "1 ppm",
+        null,
+        null,
+        null,
+        "field",
+        "frozen",
+        "2021-11-29",
+        "USA: Massachusetts, Oak Pine Forest",
+        "41.551919, -70.635356",
+        "1 m",
+        "-80 Celcius",
+        "4mm sieved",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "4.56",
+        "9:54",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "OKPF_CoreB_MID",
+        "UUID:OKPF-CB-M-91037ec4-7abc-42e6-afc3-d69e4183c186",
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Oak pine woodland. Tree (canopy) layer vegetation: Pirus strobus (white pine), Pinus rigida (pitch pine), Quercus alba (white oak), Quercus velutina (black oak). Understory: Gaylussacia baccata (huckleberry). ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Chloroform fumigation direct extraction",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        "frozen",
+        "2021-11-29",
+        "USA: Massachusetts, Oak Pine Forest",
+        "41.551919, -70.635356",
+        "1 m",
+        "-80 Celcius",
+        "4mm sieved",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "9:54",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "OKPF_CoreB_TOP",
+        "UUID:OKPF-CB-T-08bb4fcb-2668-4d6f-a7eb-8f76a862abaf",
+        "metagenomics;natural organic matter",
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Oak pine woodland. Tree (canopy) layer vegetation: Pirus strobus (white pine), Pinus rigida (pitch pine), Quercus alba (white oak), Quercus velutina (black oak). Understory: Gaylussacia baccata (huckleberry). ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Chloroform fumigation direct extraction",
+        "22.837",
+        null,
+        null,
+        "16.95 %",
+        "0.74 %",
+        null,
+        null,
+        null,
+        "2 ppm",
+        null,
+        null,
+        null,
+        "field",
+        "frozen",
+        "2021-11-29",
+        "USA: Massachusetts, Oak Pine Forest",
+        "41.551919, -70.635356",
+        "1 m",
+        "-80 Celcius",
+        "4mm sieved, combined core (C1-C3)",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "3.72",
+        "9:54",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
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+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "PETF",
+        null,
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Pasture grass prevuously found at Peterson Farm. To ID; needed more material and flowers/seeds/ Could not ID on day of sampling. Dactylis glomerata (orchard grass), Festuca arundinacea (tall fescue), Schyzachryium scoparium (litle bluestem), Agrostis Scabra (rough bentgrass), Erigrostis spectabilis (purple lovegrass) ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "0.419 m3/m3",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        null,
+        "2021-11-28",
+        "USA: Massachusetts, Peterson Farm",
+        "41.553175, -70.639839",
+        "1 m",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "12:47",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "PETF_CoreA_BTM",
+        "UUID:PETF-CA-B-07bcbd4a-c08f-4042-bb36-352c8f2e7f54",
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Pasture grass prevuously found at Peterson Farm. To ID; needed more material and flowers/seeds/ Could not ID on day of sampling. Dactylis glomerata (orchard grass), Festuca arundinacea (tall fescue), Schyzachryium scoparium (litle bluestem), Agrostis Scabra (rough bentgrass), Erigrostis spectabilis (purple lovegrass) ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "N/A",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        "fresh",
+        "2021-11-28",
+        "USA: Massachusetts, Peterson Farm",
+        "41.553175, -70.639839",
+        "1 m",
+        "4 Celcius",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "12:47",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "PETF_CoreA_MID",
+        "UUID:PETF-CA-M-c159de0d-3958-4d1b-b81c-57ae38f51940",
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Pasture grass prevuously found at Peterson Farm. To ID; needed more material and flowers/seeds/ Could not ID on day of sampling. Dactylis glomerata (orchard grass), Festuca arundinacea (tall fescue), Schyzachryium scoparium (litle bluestem), Agrostis Scabra (rough bentgrass), Erigrostis spectabilis (purple lovegrass) ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "N/A",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        "fresh",
+        "2021-11-28",
+        "USA: Massachusetts, Peterson Farm",
+        "41.553175, -70.639839",
+        "1 m",
+        "4 Celcius",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "12:47",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "PETF_CoreA_Top",
+        "UUID:PETF-CA-T-c95e7758-de23-42c1-b6c2-902a676cff3c",
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Pasture grass prevuously found at Peterson Farm. To ID; needed more material and flowers/seeds/ Could not ID on day of sampling. Dactylis glomerata (orchard grass), Festuca arundinacea (tall fescue), Schyzachryium scoparium (litle bluestem), Agrostis Scabra (rough bentgrass), Erigrostis spectabilis (purple lovegrass) ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "N/A",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        "fresh",
+        "2021-11-28",
+        "USA: Massachusetts, Peterson Farm",
+        "41.553175, -70.639839",
+        "1 m",
+        "4 Celcius",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "12:47",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "PETF_CoreB_BTM",
+        "UUID:PETF-CB-B-9196012d-042a-47b4-986a-21ead1040e31",
+        "metagenomics;natural organic matter",
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Pasture grass prevuously found at Peterson Farm. To ID; needed more material and flowers/seeds/ Could not ID on day of sampling. Dactylis glomerata (orchard grass), Festuca arundinacea (tall fescue), Schyzachryium scoparium (litle bluestem), Agrostis Scabra (rough bentgrass), Erigrostis spectabilis (purple lovegrass) ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Chloroform fumigation direct extraction",
+        "9.265",
+        null,
+        null,
+        "1.26 %",
+        "0.14 %",
+        null,
+        null,
+        null,
+        "5 ppm",
+        null,
+        null,
+        null,
+        "field",
+        "frozen",
+        "2021-11-28",
+        "USA: Massachusetts, Peterson Farm",
+        "41.553175, -70.639839",
+        "1 m",
+        "-80 Celcius",
+        "4mm sieved",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "6.42",
+        "12:47",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "PETF_CoreB_MID",
+        "UUID:PETF-CB-M-daab2947-bfe3-4c75-8633-f9e0eec92bd5",
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Pasture grass prevuously found at Peterson Farm. To ID; needed more material and flowers/seeds/ Could not ID on day of sampling. Dactylis glomerata (orchard grass), Festuca arundinacea (tall fescue), Schyzachryium scoparium (litle bluestem), Agrostis Scabra (rough bentgrass), Erigrostis spectabilis (purple lovegrass) ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Chloroform fumigation direct extraction",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        "frozen",
+        "2021-11-28",
+        "USA: Massachusetts, Peterson Farm",
+        "41.553175, -70.639839",
+        "1 m",
+        "-80 Celcius",
+        "4mm sieved",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "12:47",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "PETF_CoreB_TOP",
+        "UUID:PETF-CB-T-cef6133d-59d9-44f6-8c22-29664736616d",
+        "metagenomics;natural organic matter",
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Pasture grass prevuously found at Peterson Farm. To ID; needed more material and flowers/seeds/ Could not ID on day of sampling. Dactylis glomerata (orchard grass), Festuca arundinacea (tall fescue), Schyzachryium scoparium (litle bluestem), Agrostis Scabra (rough bentgrass), Erigrostis spectabilis (purple lovegrass) ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Chloroform fumigation direct extraction",
+        "10.009",
+        null,
+        null,
+        "2.19 %",
+        "0.22 %",
+        null,
+        null,
+        null,
+        "7 ppm",
+        null,
+        null,
+        null,
+        "field",
+        "frozen",
+        "2021-11-28",
+        "USA: Massachusetts, Peterson Farm",
+        "41.553175, -70.639839",
+        "1 m",
+        "-80 Celcius",
+        "4mm sieved, combined core (C1-C3)",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "5.81",
+        "12:47",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
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+        null,
+        null,
+        null,
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+        null,
+        null,
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+        null,
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+        null,
+        null,
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+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
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+      ],
+      [
+        null,
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+      [
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+        "UUID:UT12-CB-B-84465a7e-6d15-4aad-9d64-5345cb857450",
+        "metagenomics;natural organic matter",
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+        "0.1 ppm",
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+        "USA: Utah, 22UT012 - High Elevation Rock Mountain UT - LeMonte/BYU",
+        "40.8469346438125, -109.712571123708",
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+        "5.87",
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+      [
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+        "UUID:UT12-CB-M-4187cb69-6d44-4dbb-bbf2-f3461013eb85",
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+        "field",
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+        "2022-07-21",
+        "USA: Utah, 22UT012 - High Elevation Rock Mountain UT - LeMonte/BYU",
+        "40.8469346438125, -109.712571123708",
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+        "-80 Celcius",
+        "4mm sieved",
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+        "Kit 1",
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+        "14:15  to 15:15 ",
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+      [
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+        "metagenomics;natural organic matter",
+        "soil",
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+        null,
+        null,
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+        null,
+        null,
+        null,
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+        null,
+        null,
+        null,
+        "Meadow on edge of pine and aspen forest",
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+        "USA: Utah, 22UT019 - High Elevation Rock Mountain UT - LeMonte/BYU",
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+        ".2-.3",
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+        "0-.1",
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+        "UUID:UT19-CB-B-7641dbf9-c478-4252-b2ef-dc6fc4c2baf7",
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+        "soil",
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+        "Conifer forest  ",
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+        "1.125124173 FW/DW",
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+        "field",
+        "frozen",
+        "2022-07-21",
+        "USA: Utah, 22UT019 - High Elevation Rock Mountain UT - LeMonte/BYU",
+        "40.7018370916945, -109.581841189368",
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+        "7.63",
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+      [
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+        "UUID:UT19-CB-M-19655130-1462-4153-b629-afd1bfa5ec4d",
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+        "soil",
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+        null,
+        "field",
+        "frozen",
+        "2022-07-21",
+        "USA: Utah, 22UT019 - High Elevation Rock Mountain UT - LeMonte/BYU",
+        "40.7018370916945, -109.581841189368",
+        "2610 m",
+        "-80 Celcius",
+        "4mm sieved",
+        null,
+        null,
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+        null,
+        null,
+        null,
+        "Kit 1",
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+        null,
+        null,
+        null,
+        "09:50  to 11:00 ",
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+        null,
+        null
+      ],
+      [
+        "UT19_CoreB_TOP",
+        "UUID:UT19-CB-T-cc59032d-d8e6-4da3-95eb-df9b2ce3d7e3",
+        "metagenomics;natural organic matter",
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
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+        null,
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+        null,
+        null,
+        null,
+        null,
+        "Conifer forest  ",
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+        "2022-07-21",
+        "USA: Utah, 22UT019 - High Elevation Rock Mountain UT - LeMonte/BYU",
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+      [
+        "UT23",
+        null,
+        null,
+        "soil",
+        null,
+        null,
+        null,
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+        null,
+        null,
+        null,
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+        null,
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+        null,
+        null,
+        null,
+        "Aspen, lupine, and lots of common juniper. Upper mountain slope",
+        null,
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+        "0.108m^3/m^3",
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+        null,
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+        null,
+        null,
+        "field",
+        null,
+        "2022-07-21",
+        "USA: Utah, 22UT023 - High Elevation Rock Mountain UT - LeMonte/BYU",
+        "40.6852929785344, -109.499950239684",
+        "2502 m",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "11:40  to 12:40 ",
+        null,
+        null,
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+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "UT23_CoreA_BTM",
+        "UUID:UT23-CA-B-a410e465-711d-44f2-bf2f-4691fbbacac7",
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Aspen, lupine, and lots of common juniper. Upper mountain slope",
+        null,
+        null,
+        null,
+        null,
+        null,
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+        null,
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+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "N/A",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        "fresh",
+        "2022-07-21",
+        "USA: Utah, 22UT023 - High Elevation Rock Mountain UT - LeMonte/BYU",
+        "40.6852929785344, -109.499950239684",
+        "2502 m",
+        "4 Celcius",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "11:40  to 12:40 ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "UT23_CoreA_MID",
+        "UUID:UT23-CA-M-23d021c8-4da0-4506-9336-dc07b3f382ab",
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Aspen, lupine, and lots of common juniper. Upper mountain slope",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
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+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "N/A",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        "fresh",
+        "2022-07-21",
+        "USA: Utah, 22UT023 - High Elevation Rock Mountain UT - LeMonte/BYU",
+        "40.6852929785344, -109.499950239684",
+        "2502 m",
+        "4 Celcius",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "11:40  to 12:40 ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "UT23_CoreA_TOP",
+        "UUID:UT23-CA-T-13554ae5-3de6-45ac-9881-836447070379",
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Aspen, lupine, and lots of common juniper. Upper mountain slope",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
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+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "N/A",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        "fresh",
+        "2022-07-21",
+        "USA: Utah, 22UT023 - High Elevation Rock Mountain UT - LeMonte/BYU",
+        "40.6852929785344, -109.499950239684",
+        "2502 m",
+        "4 Celcius",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "11:40  to 12:40 ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "UT23_CoreB_BTM",
+        "UUID:UT23-CB-B-e76880f1-deec-4076-9e1a-1377fd94849a",
+        "metagenomics;natural organic matter",
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Aspen, lupine, and lots of common juniper. Upper mountain slope",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "1.097546547 FW/DW",
+        null,
+        null,
+        null,
+        "Chloroform fumigation direct extraction",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "0.3 ppm",
+        null,
+        null,
+        null,
+        "field",
+        "frozen",
+        "2022-07-21",
+        "USA: Utah, 22UT023 - High Elevation Rock Mountain UT - LeMonte/BYU",
+        "40.6852929785344, -109.499950239684",
+        "2502 m",
+        "-80 Celcius",
+        "4mm sieved",
+        null,
+        ".2-.3",
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "7.04",
+        "11:40  to 12:40 ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "UT23_CoreB_MID",
+        "UUID:UT23-CB-M-58d14c22-11ec-4356-a493-e50ea3b8cdea",
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Aspen, lupine, and lots of common juniper. Upper mountain slope",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Chloroform fumigation direct extraction",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        "frozen",
+        "2022-07-21",
+        "USA: Utah, 22UT023 - High Elevation Rock Mountain UT - LeMonte/BYU",
+        "40.6852929785344, -109.499950239684",
+        "2502 m",
+        "-80 Celcius",
+        "4mm sieved",
+        null,
+        ".1-.2",
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "11:40  to 12:40 ",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "UT23_CoreB_TOP",
+        "UUID:UT23-CB-T-c70411c3-0a2f-43ae-a58d-204fb8c48c46",
+        "metagenomics;natural organic matter",
+        "soil",
+        null,
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+        "2022-07-20",
+        "USA: Utah, 22UT024 - High Elevation Rock Mountain UT - LeMonte/BYU",
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+        ".2-.3",
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+        "UUID:UT24-CA-M-48b32a1c-a6cb-4677-a67e-56305e073a5c",
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+        "USA: Utah, 22UT024 - High Elevation Rock Mountain UT - LeMonte/BYU",
+        "40.68204, -109.647218",
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+        ".1-.2",
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+        "18:30  to 20:30 ",
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+        "N/A",
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+        "field",
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+        "USA: Utah, 22UT024 - High Elevation Rock Mountain UT - LeMonte/BYU",
+        "40.68204, -109.647218",
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+        "4 Celcius",
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+        "18:30  to 20:30 ",
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+        "Environmental",
+        "Terrestrial",
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+        "Conifer forest (lodgepole pine, Douglas fir, quaking aspen, common juniper) ",
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+        "1.109715562 FW/DW",
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+        "Chloroform fumigation direct extraction",
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+        "0.2 ppm",
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+        "field",
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+        "2022-07-20",
+        "USA: Utah, 22UT024 - High Elevation Rock Mountain UT - LeMonte/BYU",
+        "40.68204, -109.647218",
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+        "-80 Celcius",
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+        "Kit 1",
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+        "6.07",
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+        "Chloroform fumigation direct extraction",
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+        null,
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+        null,
+        null,
+        "field",
+        "frozen",
+        "2022-07-20",
+        "USA: Utah, 22UT024 - High Elevation Rock Mountain UT - LeMonte/BYU",
+        "40.68204, -109.647218",
+        "2746 m",
+        "-80 Celcius",
+        "4mm sieved",
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+        "field",
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+        "2022-04-04",
+        "USA: Maryland, Winters Lane Lower Soil Pit",
+        "39.290382, -76.744543",
+        "139 m",
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+        "Kit 4",
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+        "14:50 & 15:35 ",
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+        "UUID:WLLO-CA-B-0652fd07-7cf2-4b8a-8fe6-cd0874525687",
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+        "Deciduous, some grass",
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+        "N/A",
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+        "field",
+        "fresh",
+        "2022-04-04",
+        "USA: Maryland, Winters Lane Lower Soil Pit",
+        "39.290382, -76.744543",
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+        "4 Celcius",
+        null,
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+        ".2-.3",
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+        "Kit 4",
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+        "14:50 & 15:35 ",
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+      [
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+        "UUID:WLLO-CA-M-9dcea77b-02f7-4bd2-8b45-1eea963f2879",
+        null,
+        "soil",
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+        "Environmental",
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+        "Deciduous, some grass",
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+        "N/A",
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+        "field",
+        "fresh",
+        "2022-04-04",
+        "USA: Maryland, Winters Lane Lower Soil Pit",
+        "39.290382, -76.744543",
+        "139 m",
+        "4 Celcius",
+        null,
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+        ".1-.2",
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+        "Kit 4",
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+        "14:50 & 15:35 ",
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+      ],
+      [
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+        "UUID:WLLO-CA-T-9c4451d9-0c6b-470a-8c3e-e5677d09bf12",
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+        "soil",
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+        "Deciduous, some grass",
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+        "N/A",
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+        "field",
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+        "2022-04-04",
+        "USA: Maryland, Winters Lane Lower Soil Pit",
+        "39.290382, -76.744543",
+        "139 m",
+        "4 Celcius",
+        null,
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+        "0-.1",
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+        "Kit 4",
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+        "14:50 & 15:35 ",
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+      ],
+      [
+        "WLLO_CoreB_BTM",
+        "UUID:WLLO-CB-B-68043fc5-8096-41a1-9df6-b67edd414c4f",
+        "metagenomics;natural organic matter",
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
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+        null,
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+        null,
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+        null,
+        null,
+        "Deciduous, some grass",
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+        null,
+        "1.206495851 FW/DW",
+        null,
+        null,
+        null,
+        "Chloroform fumigation direct extraction",
+        "14.089",
+        null,
+        null,
+        "2.54 %",
+        "0.18 %",
+        null,
+        null,
+        null,
+        "2 ppm",
+        null,
+        null,
+        null,
+        "field",
+        "frozen",
+        "2022-04-04",
+        "USA: Maryland, Winters Lane Lower Soil Pit",
+        "39.290382, -76.744543",
+        "139 m",
+        "-80 Celcius",
+        "4mm sieved",
+        null,
+        ".085-.17",
+        null,
+        null,
+        null,
+        null,
+        "Kit 4",
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+        null,
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+        null,
+        null,
+        "7.35",
+        "14:50 & 15:35 ",
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+        null
+      ],
+      [
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+        "UUID:WLLO-CB-M-577363a9-708e-4c3a-9ec2-e59bacf9d245",
+        null,
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
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+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Deciduous, some grass",
+        null,
+        null,
+        null,
+        null,
+        null,
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+        null,
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+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Chloroform fumigation direct extraction",
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+        "2022-08-09",
+        "USA: Wyoming, 22WY015",
+        "42.581893, -108.751004",
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+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Chloroform fumigation direct extraction",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "field",
+        "frozen",
+        "2022-08-09",
+        "USA: Wyoming, 22WY015",
+        "42.581893, -108.751004",
+        "2639 m",
+        "-80 Celcius",
+        "4mm sieved",
+        null,
+        ".1-.2",
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "14:03",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ],
+      [
+        "WY15_CoreB_TOP",
+        "UUID:WY15-CB-T-44303230-0b7b-4367-b3e3-22c9f70ddbce",
+        "metagenomics;natural organic matter",
+        "soil",
+        null,
+        null,
+        null,
+        null,
+        "Environmental",
+        "Terrestrial",
+        "Soil",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Conifer forest",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "Chloroform fumigation direct extraction",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "1.2 ppm",
+        null,
+        null,
+        null,
+        "field",
+        "frozen",
+        "2022-08-09",
+        "USA: Wyoming, 22WY015",
+        "42.581893, -108.751004",
+        "2639 m",
+        "-80 Celcius",
+        "4mm sieved, combined core (C1-C3)",
+        null,
+        "0-.1",
+        null,
+        null,
+        null,
+        null,
+        "Kit 1",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        "5.14",
+        "14:03",
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null,
+        null
+      ]
+    ]
+  },
+  "status": "in-progress",
+  "id": "7618f125-5957-499d-a118-1a30d0f20ea0",
+  "author_orcid": "0009-0008-4013-7737",
+  "created": "2023-02-28T23:03:35.017794",
+  "author": {
+    "id": "7d53b72f-7975-4188-b539-1968f2e92d55",
+    "orcid": "0009-0008-4013-7737",
+    "name": "James Tessmer",
+    "is_admin": false
+  }
+}
\ No newline at end of file
diff --git a/sample_annotator/clients/src/main.py b/sample_annotator/clients/src/main.py
new file mode 100644
index 0000000..6970857
--- /dev/null
+++ b/sample_annotator/clients/src/main.py
@@ -0,0 +1,9 @@
+import sys
+sys.path.append('clients')
+from submission_portal_client.py import submission_portal_client
+
+client = submission_portal_client('mappings.csv','no_path')
+map_dict = client.create_mapping_dict()
+df = client.read_data_file('example_data.json')
+biosample_db = client.create_biosample_set(map_dict,df)
+client.dump_db(biosample_db,"output.json")
\ No newline at end of file
diff --git a/sample_annotator/clients/src/mappings.csv b/sample_annotator/clients/src/mappings.csv
new file mode 100644
index 0000000..d64b10d
--- /dev/null
+++ b/sample_annotator/clients/src/mappings.csv
@@ -0,0 +1,111 @@
+sample name,samp_name
+globally unique ID,id
+analysis/data type,analysis_type
+environmental package,env_package
+sample linkage,sample_link
+broad-scale environmental context,env_broad_scale
+local environmental context,env_local_scale
+environmental medium,env_medium
+ecosystem,ecosystem
+ecosystem_category,ecosystem_category
+ecosystem_type,ecosystem_type
+ecosystem_subtype,ecosystem_subtype
+specific_ecosystem,specific_ecosystem
+slope aspect,slope_aspect
+history/agrochemical additions,agrochem_addition
+extreme_unusual_properties/Al saturation,al_sat
+extreme_unusual_properties/Al saturation method,al_sat_meth
+mean annual precipitation,annual_precpt
+mean annual temperature,annual_temp
+history/crop rotation,crop_rotation
+current land use,cur_land_use
+current vegetation,cur_vegetation
+current vegetation method,cur_vegetation_meth
+drainage classification,drainage_class
+experimental factor,experimental_factor
+history/extreme events,extreme_event
+soil_taxonomic/FAO classification,fao_class
+history/fire,fire
+history/flooding,flooding
+extreme_unusual_properties/heavy metals,heavy_metals
+extreme_unusual_properties/heavy metals method,heavy_metals_meth
+horizon method,horizon_meth
+link to classification information,link_class_info
+link to climate information,link_climate_info
+soil_taxonomic/local classification,local_class
+miscellaneous parameter,misc_param
+soil_taxonomic/local classification method,local_class_meth
+oxygenation status of sample,oxy_stat_samp
+history/previous land use method,prev_land_use_meth
+history/previous land use,previous_land_use
+profile position,profile_position
+mean seasonal precipitation,season_precpt
+mean seasonal temperature,season_temp
+slope gradient,slope_gradient
+soil horizon,soil_horizon
+soil texture measurement,soil_text_measure
+soil texture method,soil_texture_meth
+soil type,soil_type
+soil type method,soil_type_meth
+temperature,temp
+history/tillage,tillage
+water content,water_content
+water content method,water_cont_soil_meth
+pH method,ph_meth
+microbial biomass,microbial_biomass
+microbial biomass method,micro_biomass_meth
+carbon/nitrogen ratio,carb_nitro_ratio
+organic matter,org_matter
+organic nitrogen,org_nitro
+total carbon,tot_carb
+total nitrogen content,tot_nitro_content
+total nitrogen content method,tot_nitro_cont_meth
+total organic carbon,tot_org_carb
+total organic carbon method,tot_org_c_meth
+total phosphorus,tot_phosp
+phosphate,phosphate
+salinity,salinity
+salinity method,salinity_meth
+growth facility,growth_facil
+storage conditions,store_cond
+collection date,collection_date
+geographic location (country and/or sea region),geo_loc_name
+geographic location (latitude and longitude),lat_lon
+elevation,elev
+sample storage temperature,samp_store_temp
+composite design/sieving,sieving
+size-fraction lower threshold,size_frac_low
+depth meters,depth
+size-fraction upper threshold,size_frac_up
+sample material processing,samp_mat_process
+biotic regimen,biotic_regm
+sample collection device,samp_collec_device
+sample collection method,samp_collec_method
+air temperature regimen,air_temp_regm
+chemical administration,chem_administration
+amount or size of sample collected,samp_size
+climate environment,climate_environment
+gaseous environment,gaseous_environment
+humidity regimen,humidity_regm
+observed biotic relationship,biotic_relationship
+relationship to oxygen,rel_to_oxygen
+light regimen,light_regm
+watering regimen,watering_regm
+altitude,alt
+pH,ph
+collection time GMT,collection_time
+incubation collection date,collection_date_inc
+incubation collection time GMT,collection_time_inc
+incubation start date,start_date_inc
+incubation start time GMT,start_time_inc
+filter method,filter_method
+experimental factor- other,experimental_factor_other
+non-microbial biomass,non_microb_biomass
+non-microbial biomass method,non_microb_biomass_method
+microbial biomass carbon,microbial_biomass_c
+microbial biomass carbon method,micro_biomass_c_meth
+microbial biomass nitrogen,microbial_biomass_n
+microbial biomass nitrogen method,micro_biomass_n_meth
+organic nitrogen method,org_nitro_method
+other treatments,other_treatment
+isotope exposure/addition,isotope_exposure
diff --git a/tests/output/gold_nmdc.json b/tests/output/gold_nmdc.json
index 3280963..f0a147e 100644
--- a/tests/output/gold_nmdc.json
+++ b/tests/output/gold_nmdc.json
@@ -1,29 +1,53 @@
 {
     "biosample_set": [
         {
-            "id": "gold:Gb0239939",
+            "id": "nmdc:bsm-11-tpvezb16",
             "name": "Banana cropland soil microbial communities from Singapore - Seedorf71.JP2soil.20",
             "description": "Banana cropland soil microbial communities from Singapore",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000245"
+                "has_raw_value": "ENVO_01000245",
+                "term": {
+                    "id": "ENVO:01000245",
+                    "name": "cropland biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00000119"
+                "has_raw_value": "ENVO_00000119",
+                "term": {
+                    "id": "ENVO:00000119",
+                    "name": "planted forest"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:02000059"
+                "has_raw_value": "ENVO_02000059",
+                "term": {
+                    "id": "ENVO:02000059",
+                    "name": "surface soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-rqja4639",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Seedorf71.JP2soil.20"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0239939"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724289"
+            ],
+            "elev": 19.0,
             "geo_loc_name": {
                 "has_raw_value": "Singapore"
             },
             "lat_lon": {
-                "has_raw_value": "1.43492266 103.7112946",
-                "latitude": 1.43492266,
-                "longitude": 103.7112946
+                "has_raw_value": "1.43492266 103.7112946"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -33,79 +57,119 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Banana cropland soil",
             "location": "Singapore",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0239939"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724289"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Banana cropland soil"
         },
         {
-            "id": "gold:Gb0239922",
-            "name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen14.12102015",
-            "description": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA",
+            "id": "nmdc:bsm-11-3qt9pm95",
+            "name": "Temperate coniferous forest soil microbial communities from Oregon, Coos County, USA - Myrold59.soil.21.NRCS0476",
+            "description": "Temperate coniferous forest soil microbial communities from Oregon, Coos County, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000219"
+                "has_raw_value": "ENVO_01000211",
+                "term": {
+                    "id": "ENVO:01000211",
+                    "name": "temperate coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00002204"
+                "has_raw_value": "ENVO_01000211",
+                "term": {
+                    "id": "ENVO:01000211",
+                    "name": "temperate coniferous forest biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-bj0djd41",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Myrold59.soil.21.NRCS0476"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240054"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724227"
+            ],
+            "elev": 46.0,
             "geo_loc_name": {
-                "has_raw_value": "USA: Pennsylvania,Borough of Centralia"
+                "has_raw_value": "USA: Oregon, Coos County"
             },
             "lat_lon": {
-                "has_raw_value": "40.8007 -76.34115",
-                "latitude": 40.8007,
-                "longitude": -76.34115
+                "has_raw_value": "43.2122 -124.35476"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Unclassified",
+            "ecosystem_subtype": "Temperate forest",
+            "specific_ecosystem": "Bulk soil",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Anthropogenic terrestrial soil",
+            "habitat": "Temperate coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0239922"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724301"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Temperate coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240016",
-            "name": "Oil palm plantation surface soil microbial communities from Singapore - Seedorf71.PP2soil.10",
-            "description": "Oil palm plantation surface soil microbial communities from Singapore",
+            "id": "nmdc:bsm-11-r30avh96",
+            "name": "Banana cropland soil microbial communities from Singapore - Seedorf71.BP2soil.26",
+            "description": "Banana cropland soil microbial communities from Singapore",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000249"
+                "has_raw_value": "ENVO_01000245",
+                "term": {
+                    "id": "ENVO:01000245",
+                    "name": "cropland biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00000120"
+                "has_raw_value": "ENVO_00000161",
+                "term": {
+                    "id": "ENVO:00000161",
+                    "name": "banana plantation"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:02000059"
+                "has_raw_value": "ENVO_02000059",
+                "term": {
+                    "id": "ENVO:02000059",
+                    "name": "surface soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-6gv4wf57",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Seedorf71.BP2soil.26"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0239936"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724284"
+            ],
+            "elev": 19.0,
             "geo_loc_name": {
                 "has_raw_value": "Singapore"
             },
             "lat_lon": {
-                "has_raw_value": "1.294588 103.776828",
-                "latitude": 1.294588,
-                "longitude": 103.776828
+                "has_raw_value": "1.435343635 103.7115584"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -113,122 +177,182 @@
             "ecosystem_subtype": "Unclassified",
             "specific_ecosystem": "Agricultural land",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Oil palm plantation surface soil",
+            "habitat": "Banana cropland soil",
             "location": "Singapore",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240016"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724295"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Banana cropland soil"
         },
         {
-            "id": "gold:Gb0240022",
-            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.4m",
-            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
+            "id": "nmdc:bsm-11-zsrwtx25",
+            "name": "Desert gravel field soil microbial communities from Namibia - Makhalanyane46.TGP20",
+            "description": "Desert gravel field soil microbial communities from Namibia",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000183",
+                "term": {
+                    "id": "ENVO:01000183",
+                    "name": "tropical desert biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000174"
+                "has_raw_value": "ENVO_00000548",
+                "term": {
+                    "id": "ENVO:00000548",
+                    "name": "gravel field"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_01000018",
+                "term": {
+                    "id": "ENVO:01000018",
+                    "name": "gravel"
+                }
             },
+            "collected_from": "nmdc:frsite-11-1ktbv866",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Makhalanyane46.TGP20"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0239950"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724128"
+            ],
+            "elev": 1240.0,
             "geo_loc_name": {
-                "has_raw_value": "USA: Alaska, Fairbanks"
+                "has_raw_value": "Namibia"
             },
             "lat_lon": {
-                "has_raw_value": "65.16098807 -147.4826736",
-                "latitude": 65.16098807,
-                "longitude": -147.4826736
+                "has_raw_value": "-23.2453 16.1433166667"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Boreal forest/Taiga",
-            "specific_ecosystem": "Bulk soil",
+            "ecosystem_subtype": "Sand",
+            "specific_ecosystem": "Desert",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Subpolar coniferous forest soil",
-            "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240022"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724308"
-            ]
+            "habitat": "Desert gravel field soil",
+            "location": "Namibia",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Desert gravel field soil"
         },
         {
-            "id": "gold:Gb0240028",
-            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.60m",
-            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
+            "id": "nmdc:bsm-11-2axgyt20",
+            "name": "Oil palm plantation surface soil microbial communities from West Coast Park, Singapore - Seedorf71.P1soil.2",
+            "description": "Oil palm plantation surface soil microbial communities from West Coast Park, Singapore",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000249",
+                "term": {
+                    "id": "ENVO:01000249",
+                    "name": "urban biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000174"
+                "has_raw_value": "ENVO_00000120",
+                "term": {
+                    "id": "ENVO:00000120",
+                    "name": "oil palm plantation"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_02000059",
+                "term": {
+                    "id": "ENVO:02000059",
+                    "name": "surface soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-98cf8w90",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Seedorf71.P1soil.2"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240018"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724291"
+            ],
+            "elev": 6.7,
             "geo_loc_name": {
-                "has_raw_value": "USA: Alaska, Fairbanks"
+                "has_raw_value": "Singapore: West Coast Park"
             },
             "lat_lon": {
-                "has_raw_value": "65.16112503 -147.4838222",
-                "latitude": 65.16112503,
-                "longitude": -147.4838222
+                "has_raw_value": "1.29545 103.763964"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Boreal forest/Taiga",
-            "specific_ecosystem": "Bulk soil",
+            "ecosystem_subtype": "Unclassified",
+            "specific_ecosystem": "Agricultural land",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Subpolar coniferous forest soil",
-            "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240028"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724314"
-            ]
+            "habitat": "Oil palm plantation surface soil",
+            "location": "Singapore",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Oil palm plantation surface soil"
         },
         {
-            "id": "gold:Gb0240029",
+            "id": "nmdc:bsm-11-cpjd8976",
             "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.64m",
             "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000174"
+                "has_raw_value": "ENVO_01000174",
+                "term": {
+                    "id": "ENVO:01000174",
+                    "name": "forest biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-43703255",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen36.permafrost.t15.64m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240029"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724315"
+            ],
+            "elev": 243.0,
             "geo_loc_name": {
                 "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "65.16113288 -147.4838976",
-                "latitude": 65.16113288,
-                "longitude": -147.4838976
+                "has_raw_value": "65.16113288 -147.4838976"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -238,120 +362,180 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240029"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724315"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240067",
-            "name": "Temperate coniferous forest soil microbial communities from Oregon, Lane County, USA - Myrold5.soil.12.HJARA3",
-            "description": "Temperate coniferous forest soil microbial communities from Oregon, Lane County, USA",
+            "id": "nmdc:bsm-11-q9b9sh57",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.100m",
+            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000211"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000211"
+                "has_raw_value": "ENVO_01000174",
+                "term": {
+                    "id": "ENVO:01000174",
+                    "name": "forest biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-mx94bx40",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen36.permafrost.t15.100m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240034"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724320"
+            ],
+            "elev": 246.0,
             "geo_loc_name": {
-                "has_raw_value": "USA: Oregon, Lane County"
+                "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "44.226456 -122.163825",
-                "latitude": 44.226456,
-                "longitude": -122.163825
+                "has_raw_value": "65.16124063 -147.4846048"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Temperate forest",
+            "ecosystem_subtype": "Boreal forest/Taiga",
             "specific_ecosystem": "Bulk soil",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Temperate coniferous forest soil",
+            "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240067"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724206"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240094",
-            "name": "Terrestrial cropland soil microbial communities from Oregon, Tillamook County, USA - Myrold59.soil.11.NRCS0221",
-            "description": "Terrestrial cropland soil microbial communities from Oregon, Tillamook County, USA",
+            "id": "nmdc:bsm-11-7c30kb72",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T5.44m",
+            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000245"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000892"
+                "has_raw_value": "ENVO_01000355",
+                "term": {
+                    "id": "ENVO:01000355",
+                    "name": "vegetation layer"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00005774",
+                "term": {
+                    "id": "ENVO:00005774",
+                    "name": "peat soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-g7ag1k94",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen38.activelayer.soil.T5.44m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240040"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724336"
+            ],
+            "elev": 256.4909619,
             "geo_loc_name": {
-                "has_raw_value": "USA: Oregon, Tillamook County"
+                "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "45.47756 -123.84166",
-                "latitude": 45.47756,
-                "longitude": -123.84166
+                "has_raw_value": "65.16138785 -147.4862457"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Agricultural land",
+            "ecosystem_subtype": "Boreal forest/Taiga",
+            "specific_ecosystem": "Bulk soil",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Terrestrial cropland soil",
+            "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240094"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724217"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240100",
-            "name": "Terrestrial rangeland soil microbial communities from Oregon, Sherman County, USA - Myrold59.soil.8.NRCS0176",
-            "description": "Terrestrial rangeland soil microbial communities from Oregon, Sherman County, USA",
+            "id": "nmdc:bsm-11-wqctbz86",
+            "name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen06.14102015",
+            "description": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000247"
+                "has_raw_value": "ENVO_01000219",
+                "term": {
+                    "id": "ENVO:01000219",
+                    "name": "anthropogenic terrestrial biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000247"
+                "has_raw_value": "ENVO_00002204",
+                "term": {
+                    "id": "ENVO:00002204",
+                    "name": "anthropogenic contamination feature"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-7td7pw51",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Shade23.Cen06.14102015"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0239920"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724299"
+            ],
+            "elev": 466.0,
             "geo_loc_name": {
-                "has_raw_value": "USA: Oregon, Sherman County"
+                "has_raw_value": "USA: Pennsylvania,Borough of Centralia"
             },
             "lat_lon": {
-                "has_raw_value": "45.24199 -120.5791",
-                "latitude": 45.24199,
-                "longitude": -120.5791
+                "has_raw_value": "40.7974 -76.341766"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -359,45 +543,63 @@
             "ecosystem_subtype": "Unclassified",
             "specific_ecosystem": "Unclassified",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Terrestrial rangeland soil",
+            "habitat": "Anthropogenic terrestrial soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240100"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724214"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Anthropogenic terrestrial soil"
         },
         {
-            "id": "gold:Gb0315661",
+            "id": "nmdc:bsm-11-krj12398",
             "name": "Sediment microbial communities from Columbia River, Richland, WA, USA - 13114.stegen.37.s004",
             "description": "Sediment microbial communities from Columbia River, Richland, WA, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:00000873"
+                "has_raw_value": "ENVO_00000873",
+                "term": {
+                    "id": "ENVO:00000873",
+                    "name": "freshwater biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000687"
+                "has_raw_value": "ENVO_01000687",
+                "term": {
+                    "id": "ENVO:01000687",
+                    "name": "coast"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00002007"
+                "has_raw_value": "ENVO_00002007",
+                "term": {
+                    "id": "ENVO:00002007",
+                    "name": "sediment"
+                }
             },
+            "collected_from": "nmdc:frsite-11-cab91b64",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "13114.stegen.37.s004"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0315661"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724325"
+            ],
             "depth": {
                 "has_raw_value": "0.05",
-                "has_unit": "meter",
-                "has_numeric_value": 0.05
+                "has_unit": "meters"
             },
             "geo_loc_name": {
                 "has_raw_value": "USA: Washington, Richland, Columbia River"
             },
             "lat_lon": {
-                "has_raw_value": "46.3800964 -119.2735649",
-                "latitude": 46.3800964,
-                "longitude": -119.2735649
+                "has_raw_value": "46.3800964 -119.2735649"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "freshwater sediment metagenome [NCBITaxon:556182]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Aquatic",
@@ -407,39 +609,58 @@
             "add_date": "2022-04-01T00:00:00",
             "habitat": "Sediment",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
+            "mod_date": "2022-04-01T00:00:00",
             "ncbi_taxonomy_name": "freshwater sediment metagenome",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0315661"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724325"
-            ]
+            "sample_collection_site": "river sediment"
         },
         {
-            "id": "gold:Gb0239936",
-            "name": "Banana cropland soil microbial communities from Singapore - Seedorf71.BP2soil.26",
+            "id": "nmdc:bsm-11-945xea98",
+            "name": "Banana cropland soil microbial communities from Singapore - Seedorf71.BP3soil.28",
             "description": "Banana cropland soil microbial communities from Singapore",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000245"
+                "has_raw_value": "ENVO_01000245",
+                "term": {
+                    "id": "ENVO:01000245",
+                    "name": "cropland biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00000161"
+                "has_raw_value": "ENVO_00000161",
+                "term": {
+                    "id": "ENVO:00000161",
+                    "name": "banana plantation"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:02000059"
+                "has_raw_value": "ENVO_02000059",
+                "term": {
+                    "id": "ENVO:02000059",
+                    "name": "surface soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-3zhmva46",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Seedorf71.BP3soil.28"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0239937"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724285"
+            ],
+            "elev": 19.0,
             "geo_loc_name": {
                 "has_raw_value": "Singapore"
             },
             "lat_lon": {
-                "has_raw_value": "1.435343635 103.7115584",
-                "latitude": 1.435343635,
-                "longitude": 103.7115584
+                "has_raw_value": "1.435314 103.711674"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -449,120 +670,180 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Banana cropland soil",
             "location": "Singapore",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0239936"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724284"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Banana cropland soil"
         },
         {
-            "id": "gold:Gb0240024",
-            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.32m",
-            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
+            "id": "nmdc:bsm-11-t6fccs16",
+            "name": "Volcanic soil microbial communities from Hawaii, Kilauea Volcano, USA - King27.Forest.1.8.10",
+            "description": "Volcanic soil microbial communities from Hawaii, Kilauea Volcano, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000174",
+                "term": {
+                    "id": "ENVO:01000174",
+                    "name": "forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000174"
+                "has_raw_value": "ENVO_00000094",
+                "term": {
+                    "id": "ENVO:00000094",
+                    "name": "volcanic feature"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_01001841",
+                "term": {
+                    "id": "ENVO:01001841",
+                    "name": "volcanic soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-xedeb405",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "King27.Forest.1.8.10"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240121"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7723904"
+            ],
+            "elev": 1500.0,
             "geo_loc_name": {
-                "has_raw_value": "USA: Alaska, Fairbanks"
+                "has_raw_value": "USA: Hawaii, Kilauea Volcano"
             },
             "lat_lon": {
-                "has_raw_value": "65.16104591 -147.4832654",
-                "latitude": 65.16104591,
-                "longitude": -147.4832654
+                "has_raw_value": "19.389305 -155.2485"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
-            "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Boreal forest/Taiga",
-            "specific_ecosystem": "Bulk soil",
+            "ecosystem_type": "Volcanic",
+            "ecosystem_subtype": "Unclassified",
+            "specific_ecosystem": "Unclassified",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Subpolar coniferous forest soil",
+            "habitat": "Volcanic soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240024"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724310"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Volcanic soil"
         },
         {
-            "id": "gold:Gb0240035",
-            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.104m",
-            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
+            "id": "nmdc:bsm-11-a59yd072",
+            "name": "Montane desert soil microbial communities from Puca Glacier, Peru - Schmidt56.soil.Peru.25.4",
+            "description": "Montane desert soil microbial communities from Puca Glacier, Peru",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000179",
+                "term": {
+                    "id": "ENVO:01000179",
+                    "name": "desert biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000174"
+                "has_raw_value": "ENVO_01000185",
+                "term": {
+                    "id": "ENVO:01000185",
+                    "name": "montane desert biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00005741",
+                "term": {
+                    "id": "ENVO:00005741",
+                    "name": "alpine soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-02qrt740",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Schmidt56.soil.Peru.25.4"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240010"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724278"
+            ],
+            "elev": 5000.0,
             "geo_loc_name": {
-                "has_raw_value": "USA: Alaska, Fairbanks"
+                "has_raw_value": "Peru: Puca Glacier"
             },
             "lat_lon": {
-                "has_raw_value": "65.1612536 -147.4846824",
-                "latitude": 65.1612536,
-                "longitude": -147.4846824
+                "has_raw_value": "-13.773333 -71.071389"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Boreal forest/Taiga",
-            "specific_ecosystem": "Bulk soil",
+            "ecosystem_subtype": "Sand",
+            "specific_ecosystem": "Desert",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Subpolar coniferous forest soil",
-            "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240035"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724321"
-            ]
+            "habitat": "Montane desert soil",
+            "location": "Peru",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Montane desert soil"
         },
         {
-            "id": "gold:Gb0240037",
-            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T5.12m",
+            "id": "nmdc:bsm-11-rz3rm246",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.44m",
             "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000355"
+                "has_raw_value": "ENVO_01000174",
+                "term": {
+                    "id": "ENVO:01000174",
+                    "name": "forest biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00005774"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-0swpd325",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen36.permafrost.t15.44m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240026"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724312"
+            ],
+            "elev": 242.0,
             "geo_loc_name": {
                 "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "65.16128615 -147.4856357",
-                "latitude": 65.16128615,
-                "longitude": -147.4856357
+                "has_raw_value": "65.16108566 -147.4834878"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -572,325 +853,485 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240037"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724333"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240085",
-            "name": "Temperate woodland soil microbial communities from Oregon, Benton County, USA - Myrold59.soil.15.NRCS0356",
-            "description": "Temperate woodland soil microbial communities from Oregon, Benton County, USA",
+            "id": "nmdc:bsm-11-b2tsrf80",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.80m",
+            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000221"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000221"
+                "has_raw_value": "ENVO_01000174",
+                "term": {
+                    "id": "ENVO:01000174",
+                    "name": "forest biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-te1n7a26",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen36.permafrost.t15.80m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240031"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724317"
+            ],
+            "elev": 244.0,
             "geo_loc_name": {
-                "has_raw_value": "USA: Oregon, Benton County"
+                "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "44.60695 -123.238343",
-                "latitude": 44.60695,
-                "longitude": -123.238343
+                "has_raw_value": "65.16117961 -147.4842161"
+            },
+            "samp_taxon_id": {
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             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Shrubland",
+            "ecosystem_subtype": "Boreal forest/Taiga",
+            "specific_ecosystem": "Bulk soil",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Temperate woodland soil",
+            "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240085"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724221"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240012",
-            "name": "Montane desert soil microbial communities from Puca Glacier, Peru - Schmidt56.soil.Peru.85.2",
-            "description": "Montane desert soil microbial communities from Puca Glacier, Peru",
+            "id": "nmdc:bsm-11-s934p689",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T6.4m",
+            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000179"
+                "has_raw_value": "ENVO_01000250",
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+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000185"
+                "has_raw_value": "ENVO_01000355",
+                "term": {
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+                    "name": "vegetation layer"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00005741"
+                "has_raw_value": "ENVO_00005774",
+                "term": {
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+                    "name": "peat soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-tn00jg40",
             "type": "nmdc:Biosample",
+            "samp_name": {
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+            },
+            "gold_biosample_identifiers": [
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+            ],
+            "insdc_biosample_identifiers": [
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             "geo_loc_name": {
-                "has_raw_value": "Peru: Puca Glacier"
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             },
             "lat_lon": {
-                "has_raw_value": "-13.773333 -71.071389",
-                "latitude": -13.773333,
-                "longitude": -71.071389
+                "has_raw_value": "65.16131739 -147.4854417"
+            },
+            "samp_taxon_id": {
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             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Sand",
-            "specific_ecosystem": "Desert",
+            "ecosystem_subtype": "Boreal forest/Taiga",
+            "specific_ecosystem": "Bulk soil",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Montane desert soil",
-            "location": "Peru",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240012"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724280"
-            ]
+            "habitat": "Subpolar coniferous forest soil",
+            "location": "USA",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240020",
-            "name": "Oil palm plantation surface soil microbial communities from West Coast Park, Singapore - Seedorf71.P3soil.6",
-            "description": "Oil palm plantation surface soil microbial communities from West Coast Park, Singapore",
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             "part_of": [
-                "gold:Gs0154244"
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             ],
             "env_broad_scale": {
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+                    "name": "subpolar coniferous forest biome"
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             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00000120"
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+                    "name": "vegetation layer"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:02000059"
+                "has_raw_value": "ENVO_00005774",
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+                    "name": "peat soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-1ha4k194",
             "type": "nmdc:Biosample",
+            "samp_name": {
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+            },
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+            "insdc_biosample_identifiers": [
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             "geo_loc_name": {
-                "has_raw_value": "Singapore: West Coast Park"
+                "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
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-                "latitude": 1.29545,
-                "longitude": 103.763964
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             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Agricultural land",
+            "ecosystem_subtype": "Boreal forest/Taiga",
+            "specific_ecosystem": "Bulk soil",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Oil palm plantation surface soil",
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-            "mod_date": "2022-04-08T00:00:00",
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-                "gold:Gb0240020"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724293"
-            ]
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         },
         {
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-            "description": "Montane desert soil microbial communities from Puca Glacier, Peru",
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             "part_of": [
-                "gold:Gs0154244"
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             ],
             "env_broad_scale": {
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+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
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             },
             "env_medium": {
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             },
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             "type": "nmdc:Biosample",
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+            },
+            "gold_biosample_identifiers": [
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             "ecosystem_type": "Soil",
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-            "specific_ecosystem": "Desert",
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             "add_date": "2019-09-03T00:00:00",
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-            "INSDC_biosample_identifiers": [
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+            "habitat": "Subpolar coniferous forest soil",
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         },
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-            "description": "Oil palm plantation surface soil microbial communities from Singapore",
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             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
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+                "has_raw_value": "ENVO_01000247",
+                "term": {
+                    "id": "ENVO:01000247",
+                    "name": "rangeland biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00000120"
+                "has_raw_value": "ENVO_01000247",
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+                    "name": "rangeland biome"
+                }
             },
             "env_medium": {
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+                    "name": "soil"
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             },
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+            "gold_biosample_identifiers": [
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+            ],
+            "insdc_biosample_identifiers": [
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             "geo_loc_name": {
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+                "has_raw_value": "USA: Oregon, Deschutes County"
             },
             "lat_lon": {
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-                "longitude": 103.776828
+                "has_raw_value": "43.410408 -119.630923"
+            },
+            "samp_taxon_id": {
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             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
             "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Agricultural land",
+            "specific_ecosystem": "Unclassified",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Oil palm plantation surface soil",
-            "location": "Singapore",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240017"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724296"
-            ]
+            "habitat": "Terrestrial rangeland soil",
+            "location": "USA",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Terrestrial rangeland soil"
         },
         {
-            "id": "gold:Gb0240019",
-            "name": "Oil palm plantation surface soil microbial communities from West Coast Park, Singapore - Seedorf71.P2soil.4",
-            "description": "Oil palm plantation surface soil microbial communities from West Coast Park, Singapore",
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+            "name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen14.12102015",
+            "description": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000249"
+                "has_raw_value": "ENVO_01000219",
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+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00000120"
+                "has_raw_value": "ENVO_00002204",
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+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:02000059"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-crsy0302",
             "type": "nmdc:Biosample",
+            "samp_name": {
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+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0239922"
+            ],
+            "insdc_biosample_identifiers": [
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             "geo_loc_name": {
-                "has_raw_value": "Singapore: West Coast Park"
+                "has_raw_value": "USA: Pennsylvania,Borough of Centralia"
             },
             "lat_lon": {
-                "has_raw_value": "1.29545 103.763964",
-                "latitude": 1.29545,
-                "longitude": 103.763964
+                "has_raw_value": "40.8007 -76.34115"
+            },
+            "samp_taxon_id": {
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             },
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             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
             "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Agricultural land",
+            "specific_ecosystem": "Unclassified",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Oil palm plantation surface soil",
-            "location": "Singapore",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240019"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724292"
-            ]
+            "habitat": "Anthropogenic terrestrial soil",
+            "location": "USA",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
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         },
         {
-            "id": "gold:Gb0240031",
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-            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
+            "id": "nmdc:bsm-11-j2yegp54",
+            "name": "Montane desert soil microbial communities from Puca Glacier, Peru - Schmidt56.soil.Peru.85.4",
+            "description": "Montane desert soil microbial communities from Puca Glacier, Peru",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000179",
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+                    "name": "desert biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000174"
+                "has_raw_value": "ENVO_01000185",
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+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00005741",
+                "term": {
+                    "id": "ENVO:00005741",
+                    "name": "alpine soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-bcrhh350",
             "type": "nmdc:Biosample",
+            "samp_name": {
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+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240014"
+            ],
+            "insdc_biosample_identifiers": [
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             "geo_loc_name": {
-                "has_raw_value": "USA: Alaska, Fairbanks"
+                "has_raw_value": "Peru: Puca Glacier"
             },
             "lat_lon": {
-                "has_raw_value": "65.16117961 -147.4842161",
-                "latitude": 65.16117961,
-                "longitude": -147.4842161
+                "has_raw_value": "-13.773333 -71.071389"
+            },
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             },
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             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Boreal forest/Taiga",
-            "specific_ecosystem": "Bulk soil",
+            "ecosystem_subtype": "Sand",
+            "specific_ecosystem": "Desert",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Subpolar coniferous forest soil",
-            "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240031"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724317"
-            ]
+            "habitat": "Montane desert soil",
+            "location": "Peru",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Montane desert soil"
         },
         {
-            "id": "gold:Gb0240038",
-            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T5.20m",
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+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.72m",
             "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000355"
+                "has_raw_value": "ENVO_01000174",
+                "term": {
+                    "id": "ENVO:01000174",
+                    "name": "forest biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00005774"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-fanyeq10",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen36.permafrost.t15.72m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240030"
+            ],
+            "insdc_biosample_identifiers": [
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+            ],
+            "elev": 244.0,
             "geo_loc_name": {
                 "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "65.16131206 -147.4857871",
-                "latitude": 65.16131206,
-                "longitude": -147.4857871
+                "has_raw_value": "65.16115158 -147.4840682"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -900,243 +1341,363 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240038"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724334"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240098",
-            "name": "Terrestrial rangeland soil microbial communities from Oregon, Deschutes County, USA - Myrold59.soil.13.NRCS0326",
-            "description": "Terrestrial rangeland soil microbial communities from Oregon, Deschutes County, USA",
+            "id": "nmdc:bsm-11-rg96v368",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T5.20m",
+            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000247"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000247"
+                "has_raw_value": "ENVO_01000355",
+                "term": {
+                    "id": "ENVO:01000355",
+                    "name": "vegetation layer"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00005774",
+                "term": {
+                    "id": "ENVO:00005774",
+                    "name": "peat soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-3bfyjp88",
             "type": "nmdc:Biosample",
+            "samp_name": {
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+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240038"
+            ],
+            "insdc_biosample_identifiers": [
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             "geo_loc_name": {
-                "has_raw_value": "USA: Oregon, Deschutes County"
+                "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
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-                "latitude": 43.410408,
-                "longitude": -119.630923
+                "has_raw_value": "65.16131206 -147.4857871"
+            },
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             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Unclassified",
+            "ecosystem_subtype": "Boreal forest/Taiga",
+            "specific_ecosystem": "Bulk soil",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Terrestrial rangeland soil",
+            "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240098"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724219"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
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-            "name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen19.12102015",
-            "description": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA",
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+            "name": "Terrestrial cropland soil microbial communities from Oregon, Tillamook County, USA - Myrold59.soil.11.NRCS0221",
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             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
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+                "has_raw_value": "ENVO_01000245",
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+                    "name": "cropland biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00002204"
+                "has_raw_value": "ENVO_01000892",
+                "term": {
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+                    "name": "area of cropland"
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             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
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+                    "name": "soil"
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             },
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             "type": "nmdc:Biosample",
+            "samp_name": {
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+            },
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             "geo_loc_name": {
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+                "has_raw_value": "USA: Oregon, Tillamook County"
             },
             "lat_lon": {
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-                "latitude": 40.80078,
-                "longitude": -76.3415166
+                "has_raw_value": "45.47756 -123.84166"
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             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
             "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Unclassified",
+            "specific_ecosystem": "Agricultural land",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Anthropogenic terrestrial soil",
+            "habitat": "Terrestrial cropland soil",
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-            "mod_date": "2022-04-08T00:00:00",
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-            ],
-            "INSDC_biosample_identifiers": [
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+            "mod_date": "2019-09-03T00:00:00",
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         },
         {
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-            "name": "Banana cropland soil microbial communities from Singapore - Seedorf71.JP3soil.22",
-            "description": "Banana cropland soil microbial communities from Singapore",
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             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
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+                    "name": "desert biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00000119"
+                "has_raw_value": "ENVO_01000185",
+                "term": {
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+                    "name": "montane desert biome"
+                }
             },
             "env_medium": {
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+                "has_raw_value": "ENVO_00005741",
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+                }
             },
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             "type": "nmdc:Biosample",
+            "samp_name": {
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+            },
+            "gold_biosample_identifiers": [
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             "geo_loc_name": {
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+                "has_raw_value": "Nepal: Mustang Region"
             },
             "lat_lon": {
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-                "latitude": 1.435145214,
-                "longitude": 103.7113599
+                "has_raw_value": "28.72122816 83.91438789"
+            },
+            "samp_taxon_id": {
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             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Agricultural land",
+            "ecosystem_subtype": "Sand",
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             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Banana cropland soil",
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-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724290"
-            ]
+            "habitat": "Montane desert soil",
+            "location": "Nepal",
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+            "ncbi_taxonomy_name": "soil metagenome",
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         },
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-            "id": "gold:Gb0239935",
-            "name": "Banana cropland soil microbial communities from Singapore - Seedorf71.BP1soil.24",
-            "description": "Banana cropland soil microbial communities from Singapore",
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             "part_of": [
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             "env_broad_scale": {
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+                    "name": "desert biome"
+                }
             },
             "env_local_scale": {
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+                "has_raw_value": "ENVO_01000185",
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+                    "name": "montane desert biome"
+                }
             },
             "env_medium": {
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+                "has_raw_value": "ENVO_00005741",
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+                    "name": "alpine soil"
+                }
             },
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             "type": "nmdc:Biosample",
+            "samp_name": {
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+            },
+            "gold_biosample_identifiers": [
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+            ],
+            "insdc_biosample_identifiers": [
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             "geo_loc_name": {
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             },
             "lat_lon": {
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-                "longitude": 103.7113817
+                "has_raw_value": "-13.773333 -71.071389"
+            },
+            "samp_taxon_id": {
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             },
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             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Agricultural land",
+            "ecosystem_subtype": "Sand",
+            "specific_ecosystem": "Desert",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Banana cropland soil",
-            "location": "Singapore",
-            "mod_date": "2022-04-08T00:00:00",
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-            ],
-            "INSDC_biosample_identifiers": [
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-            ]
+            "habitat": "Montane desert soil",
+            "location": "Peru",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Montane desert soil"
         },
         {
-            "id": "gold:Gb0239991",
-            "name": "Montane desert soil microbial communities from Mustang Region, Nepal - Schmidt56.soil.Nepal.3",
-            "description": "Montane desert soil microbial communities from Mustang Region, Nepal",
+            "id": "nmdc:bsm-11-jjpw6w45",
+            "name": "Temperate woodland soil microbial communities from Oregon, Jackson County, USA - Myrold59.soil.17.NRCS0386",
+            "description": "Temperate woodland soil microbial communities from Oregon, Jackson County, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000179"
+                "has_raw_value": "ENVO_01000221",
+                "term": {
+                    "id": "ENVO:01000221",
+                    "name": "temperate woodland biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000185"
+                "has_raw_value": "ENVO_01000221",
+                "term": {
+                    "id": "ENVO:01000221",
+                    "name": "temperate woodland biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00005741"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-dfhjgs80",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Myrold59.soil.17.NRCS0386"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240086"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724223"
+            ],
+            "elev": 589.0,
             "geo_loc_name": {
-                "has_raw_value": "Nepal: Mustang Region"
+                "has_raw_value": "USA: Oregon, Jackson County"
             },
             "lat_lon": {
-                "has_raw_value": "28.72122816 83.91438789",
-                "latitude": 28.72122816,
-                "longitude": 83.91438789
+                "has_raw_value": "42.311278 -122.983444"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Sand",
-            "specific_ecosystem": "Desert",
+            "ecosystem_subtype": "Unclassified",
+            "specific_ecosystem": "Shrubland",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Montane desert soil",
-            "location": "Nepal",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0239991"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724259"
-            ]
+            "habitat": "Temperate woodland soil",
+            "location": "USA",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Temperate woodland soil"
         },
         {
-            "id": "gold:Gb0240013",
+            "id": "nmdc:bsm-11-ee93zf13",
             "name": "Montane desert soil microbial communities from Puca Glacier, Peru - Schmidt56.soil.Peru.85.3",
             "description": "Montane desert soil microbial communities from Puca Glacier, Peru",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000179"
+                "has_raw_value": "ENVO_01000179",
+                "term": {
+                    "id": "ENVO:01000179",
+                    "name": "desert biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000185"
+                "has_raw_value": "ENVO_01000185",
+                "term": {
+                    "id": "ENVO:01000185",
+                    "name": "montane desert biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00005741"
+                "has_raw_value": "ENVO_00005741",
+                "term": {
+                    "id": "ENVO:00005741",
+                    "name": "alpine soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-965kqj18",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Schmidt56.soil.Peru.85.3"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240013"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724281"
+            ],
+            "elev": 5000.0,
             "geo_loc_name": {
                 "has_raw_value": "Peru: Puca Glacier"
             },
             "lat_lon": {
-                "has_raw_value": "-13.773333 -71.071389",
-                "latitude": -13.773333,
-                "longitude": -71.071389
+                "has_raw_value": "-13.773333 -71.071389"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -1146,38 +1707,58 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Montane desert soil",
             "location": "Peru",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240013"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724281"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Montane desert soil"
         },
         {
-            "id": "gold:Gb0240032",
-            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.84m",
+            "id": "nmdc:bsm-11-w6wd8q85",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T7.0m",
             "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000174"
+                "has_raw_value": "ENVO_01000355",
+                "term": {
+                    "id": "ENVO:01000355",
+                    "name": "vegetation layer"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00005774",
+                "term": {
+                    "id": "ENVO:00005774",
+                    "name": "peat soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-2r9qxd17",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen38.activelayer.soil.T7.0m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240048"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724344"
+            ],
+            "elev": 247.976081,
             "geo_loc_name": {
                 "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "65.16118836 -147.4842821",
-                "latitude": 65.16118836,
-                "longitude": -147.4842821
+                "has_raw_value": "65.16146914 -147.4852154"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -1187,38 +1768,58 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240032"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724318"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240047",
-            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T6.40m",
+            "id": "nmdc:bsm-11-0d6bk753",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T7.64m",
             "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000355"
+                "has_raw_value": "ENVO_01000355",
+                "term": {
+                    "id": "ENVO:01000355",
+                    "name": "vegetation layer"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00005774"
+                "has_raw_value": "ENVO_00005774",
+                "term": {
+                    "id": "ENVO:00005774",
+                    "name": "peat soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-jvxrba95",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen38.activelayer.soil.T7.64m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240053"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724349"
+            ],
+            "elev": 260.839642,
             "geo_loc_name": {
                 "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "65.16142545 -147.4860765",
-                "latitude": 65.16142545,
-                "longitude": -147.4860765
+                "has_raw_value": "65.16166658 -147.4864426"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -1228,79 +1829,119 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240047"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724343"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240053",
-            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T7.64m",
-            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
+            "id": "nmdc:bsm-11-fdremb36",
+            "name": "Temperate coniferous forest soil microbial communities from Oregon, Lane County, USA - Myrold5.soil.12.HJARA3",
+            "description": "Temperate coniferous forest soil microbial communities from Oregon, Lane County, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000211",
+                "term": {
+                    "id": "ENVO:01000211",
+                    "name": "temperate coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000355"
+                "has_raw_value": "ENVO_01000211",
+                "term": {
+                    "id": "ENVO:01000211",
+                    "name": "temperate coniferous forest biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00005774"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-j9m8v437",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Myrold5.soil.12.HJARA3"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240067"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724206"
+            ],
+            "elev": 758.0,
             "geo_loc_name": {
-                "has_raw_value": "USA: Alaska, Fairbanks"
+                "has_raw_value": "USA: Oregon, Lane County"
             },
             "lat_lon": {
-                "has_raw_value": "65.16166658 -147.4864426",
-                "latitude": 65.16166658,
-                "longitude": -147.4864426
+                "has_raw_value": "44.226456 -122.163825"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Boreal forest/Taiga",
+            "ecosystem_subtype": "Temperate forest",
             "specific_ecosystem": "Bulk soil",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Subpolar coniferous forest soil",
+            "habitat": "Temperate coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240053"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724349"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Temperate coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240084",
+            "id": "nmdc:bsm-11-4t8vch38",
             "name": "Temperate shrubland soil microbial communities from Oregon, Josephine County, USA - Myrold59.soil.22.NRCS0526",
             "description": "Temperate shrubland soil microbial communities from Oregon, Josephine County, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000215"
+                "has_raw_value": "ENVO_01000215",
+                "term": {
+                    "id": "ENVO:01000215",
+                    "name": "temperate shrubland biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000215"
+                "has_raw_value": "ENVO_01000215",
+                "term": {
+                    "id": "ENVO:01000215",
+                    "name": "temperate shrubland biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-2y4spp57",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Myrold59.soil.22.NRCS0526"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240084"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724228"
+            ],
+            "elev": 548.0,
             "geo_loc_name": {
                 "has_raw_value": "USA: Oregon, Josephine County"
             },
             "lat_lon": {
-                "has_raw_value": "42.237306 -123.654694",
-                "latitude": 42.237306,
-                "longitude": -123.654694
+                "has_raw_value": "42.237306 -123.654694"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -1310,38 +1951,58 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Temperate shrubland soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240084"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724228"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Temperate shrubland soil"
         },
         {
-            "id": "gold:Gb0240101",
+            "id": "nmdc:bsm-11-779j7b80",
             "name": "Terrestrial rangeland soil microbial communities from Oregon, Union County, USA - Myrold59.soil.5.NRCS0096",
             "description": "Terrestrial rangeland soil microbial communities from Oregon, Union County, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000247"
+                "has_raw_value": "ENVO_01000247",
+                "term": {
+                    "id": "ENVO:01000247",
+                    "name": "rangeland biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000247"
+                "has_raw_value": "ENVO_01000247",
+                "term": {
+                    "id": "ENVO:01000247",
+                    "name": "rangeland biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-5wtphs25",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Myrold59.soil.5.NRCS0096"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240101"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724211"
+            ],
+            "elev": 1171.0,
             "geo_loc_name": {
                 "has_raw_value": "USA: Oregon, Union County"
             },
             "lat_lon": {
-                "has_raw_value": "45.093472 -117.784667",
-                "latitude": 45.093472,
-                "longitude": -117.784667
+                "has_raw_value": "45.093472 -117.784667"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -1351,325 +2012,485 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Terrestrial rangeland soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240101"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724211"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Terrestrial rangeland soil"
         },
         {
-            "id": "gold:Gb0239951",
-            "name": "Forest surface soil microbial communities from Singapore - Seedorf71.J1soil.14",
-            "description": "Forest surface soil microbial communities from Singapore",
+            "id": "nmdc:bsm-11-tyrgkk29",
+            "name": "Volcanic soil microbial communities from Hawaii, Kilauea Volcano, USA - King27.Edge.1.3.0.2",
+            "description": "Volcanic soil microbial communities from Hawaii, Kilauea Volcano, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000249"
+                "has_raw_value": "ENVO_01000174",
+                "term": {
+                    "id": "ENVO:01000174",
+                    "name": "forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00000119"
+                "has_raw_value": "ENVO_00000094",
+                "term": {
+                    "id": "ENVO:00000094",
+                    "name": "volcanic feature"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:02000059"
+                "has_raw_value": "ENVO_01001841",
+                "term": {
+                    "id": "ENVO:01001841",
+                    "name": "volcanic soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-raf0sh70",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "King27.Edge.1.3.0.2"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240115"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7723902"
+            ],
+            "elev": 1500.0,
             "geo_loc_name": {
-                "has_raw_value": "Singapore"
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-            ]
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             },
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             },
             "env_local_scale": {
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             },
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             },
             "env_medium": {
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             },
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             "env_medium": {
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             },
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             },
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-                "latitude": 65.16153816,
-                "longitude": -147.4855996
+                "has_raw_value": "65.16098807 -147.4826736"
+            },
+            "samp_taxon_id": {
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             },
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             "ecosystem_category": "Terrestrial",
@@ -1679,489 +2500,729 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
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-            "GOLD_sample_identifiers": [
-                "gold:Gb0240051"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724347"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
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-            "name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen03.14102015",
-            "description": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA",
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+            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
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             "env_broad_scale": {
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+                "has_raw_value": "ENVO_01000250",
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             },
             "env_local_scale": {
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+                "has_raw_value": "ENVO_01000174",
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+                    "name": "forest biome"
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             },
             "env_medium": {
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+                    "name": "soil"
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             },
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             "type": "nmdc:Biosample",
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+            },
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-                "longitude": -76.341133
+                "has_raw_value": "65.1612536 -147.4846824"
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             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Unclassified",
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             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Anthropogenic terrestrial soil",
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-            "GOLD_sample_identifiers": [
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-            ],
-            "INSDC_biosample_identifiers": [
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-            "description": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA",
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             },
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             "add_date": "2019-09-03T00:00:00",
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             },
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             "add_date": "2019-09-03T00:00:00",
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             },
             "env_local_scale": {
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             },
             "env_medium": {
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             },
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             "add_date": "2019-09-03T00:00:00",
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             },
             "env_local_scale": {
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             },
             "env_medium": {
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             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Boreal forest/Taiga",
-            "specific_ecosystem": "Bulk soil",
+            "ecosystem_subtype": "Unclassified",
+            "specific_ecosystem": "Unclassified",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Subpolar coniferous forest soil",
+            "habitat": "Anthropogenic terrestrial soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240046"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724342"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Anthropogenic terrestrial soil"
         },
         {
-            "id": "gold:Gb0240121",
-            "name": "Volcanic soil microbial communities from Hawaii, Kilauea Volcano, USA - King27.Forest.1.8.10",
-            "description": "Volcanic soil microbial communities from Hawaii, Kilauea Volcano, USA",
+            "id": "nmdc:bsm-11-712mpd77",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.60m",
+            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000174"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00000094"
+                "has_raw_value": "ENVO_01000174",
+                "term": {
+                    "id": "ENVO:01000174",
+                    "name": "forest biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:01001841"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-sr3c6465",
             "type": "nmdc:Biosample",
+            "samp_name": {
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+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240028"
+            ],
+            "insdc_biosample_identifiers": [
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             "geo_loc_name": {
-                "has_raw_value": "USA: Hawaii, Kilauea Volcano"
+                "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "19.389305 -155.2485",
-                "latitude": 19.389305,
-                "longitude": -155.2485
+                "has_raw_value": "65.16112503 -147.4838222"
+            },
+            "samp_taxon_id": {
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             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
-            "ecosystem_type": "Volcanic",
-            "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Unclassified",
+            "ecosystem_type": "Soil",
+            "ecosystem_subtype": "Boreal forest/Taiga",
+            "specific_ecosystem": "Bulk soil",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Volcanic soil",
+            "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240121"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7723904"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0239938",
-            "name": "Banana cropland soil microbial communities from Singapore - Seedorf71.JP1soil.18",
-            "description": "Banana cropland soil microbial communities from Singapore",
+            "id": "nmdc:bsm-11-y2s33s64",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.92m",
+            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000245"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00000119"
+                "has_raw_value": "ENVO_01000174",
+                "term": {
+                    "id": "ENVO:01000174",
+                    "name": "forest biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:02000059"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-smncmc32",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen36.permafrost.t15.92m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240033"
+            ],
+            "insdc_biosample_identifiers": [
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+            ],
+            "elev": 245.0,
             "geo_loc_name": {
-                "has_raw_value": "Singapore"
+                "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "1.434767476 103.7112433",
-                "latitude": 1.434767476,
-                "longitude": 103.7112433
+                "has_raw_value": "65.16121249 -147.4844485"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Agricultural land",
+            "ecosystem_subtype": "Boreal forest/Taiga",
+            "specific_ecosystem": "Bulk soil",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Banana cropland soil",
-            "location": "Singapore",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0239938"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724288"
-            ]
+            "habitat": "Subpolar coniferous forest soil",
+            "location": "USA",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0239950",
-            "name": "Desert gravel field soil microbial communities from Namibia - Makhalanyane46.TGP20",
-            "description": "Desert gravel field soil microbial communities from Namibia",
+            "id": "nmdc:bsm-11-acd6rp18",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T5.0m",
+            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000183"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00000548"
+                "has_raw_value": "ENVO_01000355",
+                "term": {
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+                    "name": "vegetation layer"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:01000018"
+                "has_raw_value": "ENVO_00005774",
+                "term": {
+                    "id": "ENVO:00005774",
+                    "name": "peat soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-z782ya72",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen38.activelayer.soil.T5.0m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240036"
+            ],
+            "insdc_biosample_identifiers": [
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+            "elev": 248.642813,
             "geo_loc_name": {
-                "has_raw_value": "Namibia"
+                "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "-23.2453 16.1433166667",
-                "latitude": -23.2453,
-                "longitude": 16.1433166667
+                "has_raw_value": "65.16124729 -147.4854086"
+            },
+            "samp_taxon_id": {
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             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Sand",
-            "specific_ecosystem": "Desert",
+            "ecosystem_subtype": "Boreal forest/Taiga",
+            "specific_ecosystem": "Bulk soil",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Desert gravel field soil",
-            "location": "Namibia",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0239950"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724128"
-            ]
+            "habitat": "Subpolar coniferous forest soil",
+            "location": "USA",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240010",
-            "name": "Montane desert soil microbial communities from Puca Glacier, Peru - Schmidt56.soil.Peru.25.4",
-            "description": "Montane desert soil microbial communities from Puca Glacier, Peru",
+            "id": "nmdc:bsm-11-yc9ty440",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T5.60m",
+            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000179"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000185"
+                "has_raw_value": "ENVO_01000355",
+                "term": {
+                    "id": "ENVO:01000355",
+                    "name": "vegetation layer"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00005741"
+                "has_raw_value": "ENVO_00005774",
+                "term": {
+                    "id": "ENVO:00005774",
+                    "name": "peat soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-sh178n68",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen38.activelayer.soil.T5.60m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240042"
+            ],
+            "insdc_biosample_identifiers": [
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+            ],
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             "geo_loc_name": {
-                "has_raw_value": "Peru: Puca Glacier"
+                "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "-13.773333 -71.071389",
-                "latitude": -13.773333,
-                "longitude": -71.071389
+                "has_raw_value": "65.16143193 -147.4865656"
+            },
+            "samp_taxon_id": {
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             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Sand",
-            "specific_ecosystem": "Desert",
+            "ecosystem_subtype": "Boreal forest/Taiga",
+            "specific_ecosystem": "Bulk soil",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Montane desert soil",
-            "location": "Peru",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240010"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724278"
-            ]
+            "habitat": "Subpolar coniferous forest soil",
+            "location": "USA",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240033",
-            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.92m",
+            "id": "nmdc:bsm-11-qtvza773",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T6.40m",
             "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000174"
+                "has_raw_value": "ENVO_01000355",
+                "term": {
+                    "id": "ENVO:01000355",
+                    "name": "vegetation layer"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00005774",
+                "term": {
+                    "id": "ENVO:00005774",
+                    "name": "peat soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-majdgc48",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen38.activelayer.soil.T6.40m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240047"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724343"
+            ],
+            "elev": 255.286819,
             "geo_loc_name": {
                 "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "65.16121249 -147.4844485",
-                "latitude": 65.16121249,
-                "longitude": -147.4844485
+                "has_raw_value": "65.16142545 -147.4860765"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -2171,38 +3232,58 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240033"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724319"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240036",
-            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T5.0m",
+            "id": "nmdc:bsm-11-x0w61231",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T7.4m",
             "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000355"
+                "has_raw_value": "ENVO_01000355",
+                "term": {
+                    "id": "ENVO:01000355",
+                    "name": "vegetation layer"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00005774"
+                "has_raw_value": "ENVO_00005774",
+                "term": {
+                    "id": "ENVO:00005774",
+                    "name": "peat soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-maegpn04",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen38.activelayer.soil.T7.4m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240049"
+            ],
+            "insdc_biosample_identifiers": [
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+            ],
+            "elev": 248.742415,
             "geo_loc_name": {
                 "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "65.16124729 -147.4854086",
-                "latitude": 65.16124729,
-                "longitude": -147.4854086
+                "has_raw_value": "65.16148295 -147.4852923"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -2212,284 +3293,424 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240036"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724332"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240050",
-            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T7.12m",
-            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
+            "id": "nmdc:bsm-11-efsamm87",
+            "name": "Terrestrial cropland soil microbial communities from Oregon, Benton County, USA - Myrold59.soil.2.NRCS0056",
+            "description": "Terrestrial cropland soil microbial communities from Oregon, Benton County, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000245",
+                "term": {
+                    "id": "ENVO:01000245",
+                    "name": "cropland biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000355"
+                "has_raw_value": "ENVO_01000892",
+                "term": {
+                    "id": "ENVO:01000892",
+                    "name": "area of cropland"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00005774"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-9vdpnc87",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Myrold59.soil.2.NRCS0056"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240087"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724208"
+            ],
+            "elev": 70.0,
             "geo_loc_name": {
-                "has_raw_value": "USA: Alaska, Fairbanks"
+                "has_raw_value": "USA: Oregon, Benton County"
             },
             "lat_lon": {
-                "has_raw_value": "65.16151055 -147.4854459",
-                "latitude": 65.16151055,
-                "longitude": -147.4854459
+                "has_raw_value": "44.62691 -123.21072"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Boreal forest/Taiga",
-            "specific_ecosystem": "Bulk soil",
+            "ecosystem_subtype": "Unclassified",
+            "specific_ecosystem": "Agricultural land",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Subpolar coniferous forest soil",
+            "habitat": "Terrestrial cropland soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240050"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724346"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Terrestrial cropland soil"
         },
         {
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-            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
+            "id": "nmdc:bsm-11-m6b5nj55",
+            "name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen01.14102015",
+            "description": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA",
             "part_of": [
-                "gold:Gs0154244"
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             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
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+                    "name": "anthropogenic terrestrial biome"
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             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000355"
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+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00005774"
+                "has_raw_value": "ENVO_00001998",
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+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-39saq483",
             "type": "nmdc:Biosample",
+            "samp_name": {
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+            },
+            "gold_biosample_identifiers": [
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+            ],
+            "insdc_biosample_identifiers": [
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             "geo_loc_name": {
-                "has_raw_value": "USA: Alaska, Fairbanks"
+                "has_raw_value": "USA: Pennsylvania,Borough of Centralia"
             },
             "lat_lon": {
-                "has_raw_value": "65.16165668 -147.4863661",
-                "latitude": 65.16165668,
-                "longitude": -147.4863661
+                "has_raw_value": "40.7988 -76.33928"
+            },
+            "samp_taxon_id": {
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             },
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             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Boreal forest/Taiga",
-            "specific_ecosystem": "Bulk soil",
+            "ecosystem_subtype": "Unclassified",
+            "specific_ecosystem": "Unclassified",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Subpolar coniferous forest soil",
+            "habitat": "Anthropogenic terrestrial soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240052"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724348"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Anthropogenic terrestrial soil"
         },
         {
-            "id": "gold:Gb0240108",
-            "name": "Tropical desert sand microbial communities from Namibia - Makhalanyane47.TDT1",
-            "description": "Tropical desert sand microbial communities from Namibia",
+            "id": "nmdc:bsm-11-5gvrr538",
+            "name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen12.12102015",
+            "description": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000183"
+                "has_raw_value": "ENVO_01000219",
+                "term": {
+                    "id": "ENVO:01000219",
+                    "name": "anthropogenic terrestrial biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00000170"
+                "has_raw_value": "ENVO_00002204",
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+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00005800"
+                "has_raw_value": "ENVO_00001998",
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+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-5r31wb79",
             "type": "nmdc:Biosample",
+            "samp_name": {
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+            },
+            "gold_biosample_identifiers": [
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+            ],
+            "insdc_biosample_identifiers": [
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             "geo_loc_name": {
-                "has_raw_value": "Namibia"
+                "has_raw_value": "USA: Pennsylvania,Borough of Centralia"
             },
             "lat_lon": {
-                "has_raw_value": "-23.7834 15.0804",
-                "latitude": -23.7834,
-                "longitude": 15.0804
+                "has_raw_value": "40.8013 -76.34315"
+            },
+            "samp_taxon_id": {
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             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Sand",
-            "specific_ecosystem": "Desert",
+            "ecosystem_subtype": "Unclassified",
+            "specific_ecosystem": "Unclassified",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Tropical desert sand",
-            "location": "Namibia",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240108"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724405"
-            ]
+            "habitat": "Anthropogenic terrestrial soil",
+            "location": "USA",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Anthropogenic terrestrial soil"
         },
         {
-            "id": "gold:Gb0240115",
-            "name": "Volcanic soil microbial communities from Hawaii, Kilauea Volcano, USA - King27.Edge.1.3.0.2",
-            "description": "Volcanic soil microbial communities from Hawaii, Kilauea Volcano, USA",
+            "id": "nmdc:bsm-11-dbyj0z44",
+            "name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen17.12102015",
+            "description": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000174"
+                "has_raw_value": "ENVO_01000219",
+                "term": {
+                    "id": "ENVO:01000219",
+                    "name": "anthropogenic terrestrial biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00000094"
+                "has_raw_value": "ENVO_00002204",
+                "term": {
+                    "id": "ENVO:00002204",
+                    "name": "anthropogenic contamination feature"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:01001841"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-62kwd287",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Shade23.Cen17.12102015"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0239925"
+            ],
+            "insdc_biosample_identifiers": [
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+            "elev": 482.0,
             "geo_loc_name": {
-                "has_raw_value": "USA: Hawaii, Kilauea Volcano"
+                "has_raw_value": "USA: Pennsylvania,Borough of Centralia"
             },
             "lat_lon": {
-                "has_raw_value": "19.388694 -155.249333",
-                "latitude": 19.388694,
-                "longitude": -155.249333
+                "has_raw_value": "40.79996 -76.3402666"
+            },
+            "samp_taxon_id": {
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             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
-            "ecosystem_type": "Volcanic",
+            "ecosystem_type": "Soil",
             "ecosystem_subtype": "Unclassified",
             "specific_ecosystem": "Unclassified",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Volcanic soil",
+            "habitat": "Anthropogenic terrestrial soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240115"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7723902"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Anthropogenic terrestrial soil"
         },
         {
-            "id": "gold:Gb0239927",
-            "name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen20.12102015",
-            "description": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA",
+            "id": "nmdc:bsm-11-3v29ne05",
+            "name": "Oil palm plantation surface soil microbial communities from West Coast Park, Singapore - Seedorf71.P3soil.6",
+            "description": "Oil palm plantation surface soil microbial communities from West Coast Park, Singapore",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000219"
+                "has_raw_value": "ENVO_01000249",
+                "term": {
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+                    "name": "urban biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00002204"
+                "has_raw_value": "ENVO_00000120",
+                "term": {
+                    "id": "ENVO:00000120",
+                    "name": "oil palm plantation"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_02000059",
+                "term": {
+                    "id": "ENVO:02000059",
+                    "name": "surface soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-3nnbtf41",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Seedorf71.P3soil.6"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240020"
+            ],
+            "insdc_biosample_identifiers": [
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+            ],
+            "elev": 6.7,
             "geo_loc_name": {
-                "has_raw_value": "USA: Pennsylvania,Borough of Centralia"
+                "has_raw_value": "Singapore: West Coast Park"
             },
             "lat_lon": {
-                "has_raw_value": "40.8012 -76.34256666",
-                "latitude": 40.8012,
-                "longitude": -76.34256666
+                "has_raw_value": "1.29545 103.763964"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
             "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Unclassified",
+            "specific_ecosystem": "Agricultural land",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Anthropogenic terrestrial soil",
-            "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0239927"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724306"
-            ]
+            "habitat": "Oil palm plantation surface soil",
+            "location": "Singapore",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Oil palm plantation surface soil"
         },
         {
-            "id": "gold:Gb0240065",
-            "name": "Temperate coniferous forest soil microbial communities from Oregon, Lane County, USA - Myrold5.soil.10.HJARA1",
-            "description": "Temperate coniferous forest soil microbial communities from Oregon, Lane County, USA",
+            "id": "nmdc:bsm-11-twha0d76",
+            "name": "Montane desert soil microbial communities from Mustang Region, Nepal - Schmidt56.soil.Nepal.3",
+            "description": "Montane desert soil microbial communities from Mustang Region, Nepal",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000211"
+                "has_raw_value": "ENVO_01000179",
+                "term": {
+                    "id": "ENVO:01000179",
+                    "name": "desert biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000211"
+                "has_raw_value": "ENVO_01000185",
+                "term": {
+                    "id": "ENVO:01000185",
+                    "name": "montane desert biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00005741",
+                "term": {
+                    "id": "ENVO:00005741",
+                    "name": "alpine soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-b4q7y909",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Schmidt56.soil.Nepal.3"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0239991"
+            ],
+            "insdc_biosample_identifiers": [
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+            ],
+            "elev": 5110.0,
             "geo_loc_name": {
-                "has_raw_value": "USA: Oregon, Lane County"
+                "has_raw_value": "Nepal: Mustang Region"
             },
             "lat_lon": {
-                "has_raw_value": "44.230556 -122.191464",
-                "latitude": 44.230556,
-                "longitude": -122.191464
+                "has_raw_value": "28.72122816 83.91438789"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Temperate forest",
-            "specific_ecosystem": "Bulk soil",
-            "add_date": "2019-09-03T00:00:00",
-            "habitat": "Temperate coniferous forest soil",
-            "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240065"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724204"
-            ]
+            "ecosystem_subtype": "Sand",
+            "specific_ecosystem": "Desert",
+            "add_date": "2019-09-03T00:00:00",
+            "habitat": "Montane desert soil",
+            "location": "Nepal",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Montane desert soil"
         },
         {
-            "id": "gold:Gb0240015",
-            "name": "Oil palm plantation surface soil microbial communities from Singapore - Seedorf71.PP1soil.8",
-            "description": "Oil palm plantation surface soil microbial communities from Singapore",
+            "id": "nmdc:bsm-11-wpef4k83",
+            "name": "Oil palm plantation surface soil microbial communities from West Coast Park, Singapore - Seedorf71.P2soil.4",
+            "description": "Oil palm plantation surface soil microbial communities from West Coast Park, Singapore",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000249"
+                "has_raw_value": "ENVO_01000249",
+                "term": {
+                    "id": "ENVO:01000249",
+                    "name": "urban biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00000120"
+                "has_raw_value": "ENVO_00000120",
+                "term": {
+                    "id": "ENVO:00000120",
+                    "name": "oil palm plantation"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:02000059"
+                "has_raw_value": "ENVO_02000059",
+                "term": {
+                    "id": "ENVO:02000059",
+                    "name": "surface soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-56jhxm50",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Seedorf71.P2soil.4"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240019"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724292"
+            ],
+            "elev": 6.7,
             "geo_loc_name": {
-                "has_raw_value": "Singapore"
+                "has_raw_value": "Singapore: West Coast Park"
             },
             "lat_lon": {
-                "has_raw_value": "1.294588 103.776828",
-                "latitude": 1.294588,
-                "longitude": 103.776828
+                "has_raw_value": "1.29545 103.763964"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -2499,38 +3720,58 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Oil palm plantation surface soil",
             "location": "Singapore",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240015"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724294"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Oil palm plantation surface soil"
         },
         {
-            "id": "gold:Gb0240021",
-            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.0m",
+            "id": "nmdc:bsm-11-je83bc69",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.32m",
             "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000174"
+                "has_raw_value": "ENVO_01000174",
+                "term": {
+                    "id": "ENVO:01000174",
+                    "name": "forest biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-ajy6fr37",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen36.permafrost.t15.32m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240024"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724310"
+            ],
+            "elev": 241.0,
             "geo_loc_name": {
                 "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "65.16098469 -147.4826055",
-                "latitude": 65.16098469,
-                "longitude": -147.4826055
+                "has_raw_value": "65.16104591 -147.4832654"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -2540,38 +3781,58 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240021"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724307"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240030",
-            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.72m",
+            "id": "nmdc:bsm-11-7rd7pb41",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.84m",
             "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000174"
+                "has_raw_value": "ENVO_01000174",
+                "term": {
+                    "id": "ENVO:01000174",
+                    "name": "forest biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-p4484440",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen36.permafrost.t15.84m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240032"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724318"
+            ],
+            "elev": 244.0,
             "geo_loc_name": {
                 "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "65.16115158 -147.4840682",
-                "latitude": 65.16115158,
-                "longitude": -147.4840682
+                "has_raw_value": "65.16118836 -147.4842821"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -2581,38 +3842,58 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240030"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724316"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240039",
-            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T5.32m",
+            "id": "nmdc:bsm-11-3g13s391",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T5.12m",
             "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000355"
+                "has_raw_value": "ENVO_01000355",
+                "term": {
+                    "id": "ENVO:01000355",
+                    "name": "vegetation layer"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00005774"
+                "has_raw_value": "ENVO_00005774",
+                "term": {
+                    "id": "ENVO:00005774",
+                    "name": "peat soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-y32x5j47",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen38.activelayer.soil.T5.12m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240037"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724333"
+            ],
+            "elev": 250.7621453,
             "geo_loc_name": {
                 "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "65.16135092 -147.4860143",
-                "latitude": 65.16135092,
-                "longitude": -147.4860143
+                "has_raw_value": "65.16128615 -147.4856357"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -2622,38 +3903,58 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240039"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724335"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240040",
-            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T5.44m",
+            "id": "nmdc:bsm-11-d7v7dv15",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T5.52m",
             "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000355"
+                "has_raw_value": "ENVO_01000355",
+                "term": {
+                    "id": "ENVO:01000355",
+                    "name": "vegetation layer"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00005774"
+                "has_raw_value": "ENVO_00005774",
+                "term": {
+                    "id": "ENVO:00005774",
+                    "name": "peat soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-k64pc163",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen38.activelayer.soil.T5.52m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240041"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724337"
+            ],
+            "elev": 258.0583776,
             "geo_loc_name": {
                 "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "65.16138785 -147.4862457",
-                "latitude": 65.16138785,
-                "longitude": -147.4862457
+                "has_raw_value": "65.16140989 -147.4864056"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -2663,120 +3964,180 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240040"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724336"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240087",
-            "name": "Terrestrial cropland soil microbial communities from Oregon, Benton County, USA - Myrold59.soil.2.NRCS0056",
-            "description": "Terrestrial cropland soil microbial communities from Oregon, Benton County, USA",
+            "id": "nmdc:bsm-11-amn89z37",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T7.20m",
+            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000245"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000892"
+                "has_raw_value": "ENVO_01000355",
+                "term": {
+                    "id": "ENVO:01000355",
+                    "name": "vegetation layer"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00005774",
+                "term": {
+                    "id": "ENVO:00005774",
+                    "name": "peat soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-ha12a245",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen38.activelayer.soil.T7.20m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240051"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724347"
+            ],
+            "elev": 251.807751,
             "geo_loc_name": {
-                "has_raw_value": "USA: Oregon, Benton County"
+                "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "44.62691 -123.21072",
-                "latitude": 44.62691,
-                "longitude": -123.21072
+                "has_raw_value": "65.16153816 -147.4855996"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Agricultural land",
+            "ecosystem_subtype": "Boreal forest/Taiga",
+            "specific_ecosystem": "Bulk soil",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Terrestrial cropland soil",
+            "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240087"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724208"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240095",
-            "name": "Terrestrial cropland soil microbial communities from Oregon, Umatilla County, USA - Myrold59.soil.10.NRCS0206",
-            "description": "Terrestrial cropland soil microbial communities from Oregon, Umatilla County, USA",
+            "id": "nmdc:bsm-11-27qv4t76",
+            "name": "Terrestrial rangeland soil microbial communities from Oregon, Sherman County, USA - Myrold59.soil.8.NRCS0176",
+            "description": "Terrestrial rangeland soil microbial communities from Oregon, Sherman County, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000245"
+                "has_raw_value": "ENVO_01000247",
+                "term": {
+                    "id": "ENVO:01000247",
+                    "name": "rangeland biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000892"
+                "has_raw_value": "ENVO_01000247",
+                "term": {
+                    "id": "ENVO:01000247",
+                    "name": "rangeland biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-fzxq3286",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Myrold59.soil.8.NRCS0176"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240100"
+            ],
+            "insdc_biosample_identifiers": [
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+            ],
+            "elev": 773.0,
             "geo_loc_name": {
-                "has_raw_value": "USA: Oregon, Umatilla County"
+                "has_raw_value": "USA: Oregon, Sherman County"
             },
             "lat_lon": {
-                "has_raw_value": "45.71948 -118.62585",
-                "latitude": 45.71948,
-                "longitude": -118.62585
+                "has_raw_value": "45.24199 -120.5791"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
             "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Agricultural land",
+            "specific_ecosystem": "Unclassified",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Terrestrial cropland soil",
+            "habitat": "Terrestrial rangeland soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240095"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724216"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Terrestrial rangeland soil"
         },
         {
-            "id": "gold:Gb0240119",
+            "id": "nmdc:bsm-11-g3tyzr38",
             "name": "Volcanic soil microbial communities from Hawaii, Kilauea Volcano, USA - King27.Edge.2.3.8.10",
             "description": "Volcanic soil microbial communities from Hawaii, Kilauea Volcano, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000174"
+                "has_raw_value": "ENVO_01000174",
+                "term": {
+                    "id": "ENVO:01000174",
+                    "name": "forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00000094"
+                "has_raw_value": "ENVO_00000094",
+                "term": {
+                    "id": "ENVO:00000094",
+                    "name": "volcanic feature"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:01001841"
+                "has_raw_value": "ENVO_01001841",
+                "term": {
+                    "id": "ENVO:01001841",
+                    "name": "volcanic soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-e1vmce98",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "King27.Edge.2.3.8.10"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240119"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724104"
+            ],
+            "elev": 1500.0,
             "geo_loc_name": {
                 "has_raw_value": "USA: Hawaii, Kilauea Volcano"
             },
             "lat_lon": {
-                "has_raw_value": "19.390167 -155.247417",
-                "latitude": 19.390167,
-                "longitude": -155.247417
+                "has_raw_value": "19.390167 -155.247417"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -2786,325 +4147,485 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Volcanic soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240119"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724104"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Volcanic soil"
         },
         {
-            "id": "gold:Gb0240122",
-            "name": "Volcanic soil microbial communities from Hawaii, Kilauea Volcano, USA - King27.Forest.2.0.2",
-            "description": "Volcanic soil microbial communities from Hawaii, Kilauea Volcano, USA",
+            "id": "nmdc:bsm-11-rvj3x077",
+            "name": "Banana cropland soil microbial communities from Singapore - Seedorf71.JP3soil.22",
+            "description": "Banana cropland soil microbial communities from Singapore",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000174"
+                "has_raw_value": "ENVO_01000245",
+                "term": {
+                    "id": "ENVO:01000245",
+                    "name": "cropland biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00000094"
+                "has_raw_value": "ENVO_00000119",
+                "term": {
+                    "id": "ENVO:00000119",
+                    "name": "planted forest"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:01001841"
+                "has_raw_value": "ENVO_02000059",
+                "term": {
+                    "id": "ENVO:02000059",
+                    "name": "surface soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-ds118z18",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Seedorf71.JP3soil.22"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0239940"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724290"
+            ],
+            "elev": 19.0,
             "geo_loc_name": {
-                "has_raw_value": "USA: Hawaii, Kilauea Volcano"
+                "has_raw_value": "Singapore"
             },
             "lat_lon": {
-                "has_raw_value": "19.389305 -155.2485",
-                "latitude": 19.389305,
-                "longitude": -155.2485
+                "has_raw_value": "1.435145214 103.7113599"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
-            "ecosystem_type": "Volcanic",
+            "ecosystem_type": "Soil",
             "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Unclassified",
+            "specific_ecosystem": "Agricultural land",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Volcanic soil",
-            "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240122"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7723905"
-            ]
+            "habitat": "Banana cropland soil",
+            "location": "Singapore",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Banana cropland soil"
         },
         {
-            "id": "gold:Gb0239920",
-            "name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen06.14102015",
-            "description": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA",
+            "id": "nmdc:bsm-11-fc9q8f90",
+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T6.34m",
+            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000219"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00002204"
+                "has_raw_value": "ENVO_01000355",
+                "term": {
+                    "id": "ENVO:01000355",
+                    "name": "vegetation layer"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00005774",
+                "term": {
+                    "id": "ENVO:00005774",
+                    "name": "peat soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-k06tx427",
             "type": "nmdc:Biosample",
+            "samp_name": {
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+            },
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+            ],
+            "insdc_biosample_identifiers": [
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             "geo_loc_name": {
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             },
             "lat_lon": {
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-                "latitude": 40.7974,
-                "longitude": -76.341766
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+            },
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             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Unclassified",
+            "ecosystem_subtype": "Boreal forest/Taiga",
+            "specific_ecosystem": "Bulk soil",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Anthropogenic terrestrial soil",
+            "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0239920"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724299"
-            ]
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+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
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-            "name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen17.12102015",
-            "description": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA",
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             "env_broad_scale": {
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             },
             "env_local_scale": {
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             },
             "env_medium": {
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             },
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+            },
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             },
             "lat_lon": {
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-                "latitude": 40.79996,
-                "longitude": -76.3402666
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+            },
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             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Unclassified",
+            "ecosystem_subtype": "Temperate forest",
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             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Anthropogenic terrestrial soil",
+            "habitat": "Temperate coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0239925"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724304"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Temperate coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240002",
-            "name": "Montane desert soil microbial communities from Mustang Region, Nepal - Schmidt56.soil.Nepal.NearCoral",
-            "description": "Montane desert soil microbial communities from Mustang Region, Nepal",
+            "id": "nmdc:bsm-11-qz8y6h55",
+            "name": "Banana cropland soil microbial communities from Singapore - Seedorf71.JP1soil.18",
+            "description": "Banana cropland soil microbial communities from Singapore",
             "part_of": [
-                "gold:Gs0154244"
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             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000179"
+                "has_raw_value": "ENVO_01000245",
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             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000185"
+                "has_raw_value": "ENVO_00000119",
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+                    "name": "planted forest"
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             },
             "env_medium": {
-                "has_raw_value": "ENVO:00005741"
+                "has_raw_value": "ENVO_02000059",
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+                    "name": "surface soil"
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             },
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             "type": "nmdc:Biosample",
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+            },
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             "geo_loc_name": {
-                "has_raw_value": "Nepal: Mustang Region"
+                "has_raw_value": "Singapore"
             },
             "lat_lon": {
-                "has_raw_value": "28.72122816 83.91438789",
-                "latitude": 28.72122816,
-                "longitude": 83.91438789
+                "has_raw_value": "1.434767476 103.7112433"
+            },
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             },
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             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Sand",
-            "specific_ecosystem": "Desert",
+            "ecosystem_subtype": "Unclassified",
+            "specific_ecosystem": "Agricultural land",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Montane desert soil",
-            "location": "Nepal",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240002"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724270"
-            ]
+            "habitat": "Banana cropland soil",
+            "location": "Singapore",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Banana cropland soil"
         },
         {
-            "id": "gold:Gb0240054",
-            "name": "Temperate coniferous forest soil microbial communities from Oregon, Coos County, USA - Myrold59.soil.21.NRCS0476",
-            "description": "Temperate coniferous forest soil microbial communities from Oregon, Coos County, USA",
+            "id": "nmdc:bsm-11-gdn5se73",
+            "name": "Oil palm plantation surface soil microbial communities from Singapore - Seedorf71.PP2soil.10",
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             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000211"
+                "has_raw_value": "ENVO_01000249",
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+                    "name": "urban biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000211"
+                "has_raw_value": "ENVO_00000120",
+                "term": {
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+                    "name": "oil palm plantation"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_02000059",
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+                    "name": "surface soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-4ccv3742",
             "type": "nmdc:Biosample",
+            "samp_name": {
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+            },
+            "gold_biosample_identifiers": [
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+            ],
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             "geo_loc_name": {
-                "has_raw_value": "USA: Oregon, Coos County"
+                "has_raw_value": "Singapore"
             },
             "lat_lon": {
-                "has_raw_value": "43.2122 -124.35476",
-                "latitude": 43.2122,
-                "longitude": -124.35476
+                "has_raw_value": "1.294588 103.776828"
+            },
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             },
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             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Temperate forest",
-            "specific_ecosystem": "Bulk soil",
+            "ecosystem_subtype": "Unclassified",
+            "specific_ecosystem": "Agricultural land",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Temperate coniferous forest soil",
-            "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
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-                "gold:Gb0240054"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724227"
-            ]
+            "habitat": "Oil palm plantation surface soil",
+            "location": "Singapore",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Oil palm plantation surface soil"
         },
         {
-            "id": "gold:Gb0240086",
-            "name": "Temperate woodland soil microbial communities from Oregon, Jackson County, USA - Myrold59.soil.17.NRCS0386",
-            "description": "Temperate woodland soil microbial communities from Oregon, Jackson County, USA",
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+            "name": "Oil palm plantation surface soil microbial communities from Singapore - Seedorf71.PP3soil.12",
+            "description": "Oil palm plantation surface soil microbial communities from Singapore",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000221"
+                "has_raw_value": "ENVO_01000249",
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+                    "name": "urban biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000221"
+                "has_raw_value": "ENVO_00000120",
+                "term": {
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+                    "name": "oil palm plantation"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_02000059",
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+                    "name": "surface soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-6jz17a38",
             "type": "nmdc:Biosample",
+            "samp_name": {
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+            },
+            "gold_biosample_identifiers": [
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+            ],
+            "insdc_biosample_identifiers": [
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             "geo_loc_name": {
-                "has_raw_value": "USA: Oregon, Jackson County"
+                "has_raw_value": "Singapore"
             },
             "lat_lon": {
-                "has_raw_value": "42.311278 -122.983444",
-                "latitude": 42.311278,
-                "longitude": -122.983444
+                "has_raw_value": "1.294588 103.776828"
+            },
+            "samp_taxon_id": {
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             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
             "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Shrubland",
+            "specific_ecosystem": "Agricultural land",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Temperate woodland soil",
-            "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240086"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724223"
-            ]
+            "habitat": "Oil palm plantation surface soil",
+            "location": "Singapore",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Oil palm plantation surface soil"
         },
         {
-            "id": "gold:Gb0240018",
-            "name": "Oil palm plantation surface soil microbial communities from West Coast Park, Singapore - Seedorf71.P1soil.2",
-            "description": "Oil palm plantation surface soil microbial communities from West Coast Park, Singapore",
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+            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.0m",
+            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
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+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:00000120"
+                "has_raw_value": "ENVO_01000174",
+                "term": {
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+                    "name": "forest biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:02000059"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
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+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-dj3gw554",
             "type": "nmdc:Biosample",
+            "samp_name": {
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+            },
+            "gold_biosample_identifiers": [
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+            ],
+            "insdc_biosample_identifiers": [
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+            ],
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             "geo_loc_name": {
-                "has_raw_value": "Singapore: West Coast Park"
+                "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
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-                "latitude": 1.29545,
-                "longitude": 103.763964
+                "has_raw_value": "65.16098469 -147.4826055"
+            },
+            "samp_taxon_id": {
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             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Unclassified",
-            "specific_ecosystem": "Agricultural land",
+            "ecosystem_subtype": "Boreal forest/Taiga",
+            "specific_ecosystem": "Bulk soil",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Oil palm plantation surface soil",
-            "location": "Singapore",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240018"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724291"
-            ]
+            "habitat": "Subpolar coniferous forest soil",
+            "location": "USA",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240025",
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             "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.40m",
             "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000250",
+                "term": {
+                    "id": "ENVO:01000250",
+                    "name": "subpolar coniferous forest biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000174"
+                "has_raw_value": "ENVO_01000174",
+                "term": {
+                    "id": "ENVO:01000174",
+                    "name": "forest biome"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-xwhv9p38",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Stegen36.permafrost.t15.40m"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240025"
+            ],
+            "insdc_biosample_identifiers": [
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+            ],
+            "elev": 242.0,
             "geo_loc_name": {
                 "has_raw_value": "USA: Alaska, Fairbanks"
             },
             "lat_lon": {
-                "has_raw_value": "65.161071 -147.4834186",
-                "latitude": 65.161071,
-                "longitude": -147.4834186
+                "has_raw_value": "65.161071 -147.4834186"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "soil metagenome [NCBITaxon:410658]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
@@ -3114,166 +4635,244 @@
             "add_date": "2019-09-03T00:00:00",
             "habitat": "Subpolar coniferous forest soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240025"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724311"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Subpolar coniferous forest soil"
         },
         {
-            "id": "gold:Gb0240034",
-            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen36.permafrost.t15.100m",
-            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
+            "id": "nmdc:bsm-11-vqzt3221",
+            "name": "Terrestrial cropland soil microbial communities from Oregon, Umatilla County, USA - Myrold59.soil.10.NRCS0206",
+            "description": "Terrestrial cropland soil microbial communities from Oregon, Umatilla County, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000245",
+                "term": {
+                    "id": "ENVO:01000245",
+                    "name": "cropland biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000174"
+                "has_raw_value": "ENVO_01000892",
+                "term": {
+                    "id": "ENVO:01000892",
+                    "name": "area of cropland"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00001998"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-m4wgce06",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Myrold59.soil.10.NRCS0206"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240095"
+            ],
+            "insdc_biosample_identifiers": [
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+            ],
+            "elev": 457.0,
             "geo_loc_name": {
-                "has_raw_value": "USA: Alaska, Fairbanks"
+                "has_raw_value": "USA: Oregon, Umatilla County"
             },
             "lat_lon": {
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-                "latitude": 65.16124063,
-                "longitude": -147.4846048
+                "has_raw_value": "45.71948 -118.62585"
+            },
+            "samp_taxon_id": {
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             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Boreal forest/Taiga",
-            "specific_ecosystem": "Bulk soil",
+            "ecosystem_subtype": "Unclassified",
+            "specific_ecosystem": "Agricultural land",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Subpolar coniferous forest soil",
+            "habitat": "Terrestrial cropland soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240034"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724320"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Terrestrial cropland soil"
         },
         {
-            "id": "gold:Gb0240044",
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-            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
+            "id": "nmdc:bsm-11-942k9z33",
+            "name": "Tropical desert sand microbial communities from Namibia - Makhalanyane47.TDT1",
+            "description": "Tropical desert sand microbial communities from Namibia",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000183",
+                "term": {
+                    "id": "ENVO:01000183",
+                    "name": "tropical desert biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000355"
+                "has_raw_value": "ENVO_00000170",
+                "term": {
+                    "id": "ENVO:00000170",
+                    "name": "dune"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00005774"
+                "has_raw_value": "ENVO_00005800",
+                "term": {
+                    "id": "ENVO:00005800",
+                    "name": "desert sand"
+                }
             },
+            "collected_from": "nmdc:frsite-11-0xw2g198",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Makhalanyane47.TDT1"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0240108"
+            ],
+            "insdc_biosample_identifiers": [
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             "geo_loc_name": {
-                "has_raw_value": "USA: Alaska, Fairbanks"
+                "has_raw_value": "Namibia"
             },
             "lat_lon": {
-                "has_raw_value": "65.16131739 -147.4854417",
-                "latitude": 65.16131739,
-                "longitude": -147.4854417
+                "has_raw_value": "-23.7834 15.0804"
+            },
+            "samp_taxon_id": {
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             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Boreal forest/Taiga",
-            "specific_ecosystem": "Bulk soil",
+            "ecosystem_subtype": "Sand",
+            "specific_ecosystem": "Desert",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Subpolar coniferous forest soil",
-            "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240044"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724340"
-            ]
+            "habitat": "Tropical desert sand",
+            "location": "Namibia",
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "sand metagenome",
+            "sample_collection_site": "Tropical desert sand"
         },
         {
-            "id": "gold:Gb0240049",
-            "name": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA - Stegen38.activelayer.soil.T7.4m",
-            "description": "Subpolar coniferous forest soil microbial communities from Alaska, Fairbanks, USA",
+            "id": "nmdc:bsm-11-yw2n8756",
+            "name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen20.12102015",
+            "description": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:01000250"
+                "has_raw_value": "ENVO_01000219",
+                "term": {
+                    "id": "ENVO:01000219",
+                    "name": "anthropogenic terrestrial biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000355"
+                "has_raw_value": "ENVO_00002204",
+                "term": {
+                    "id": "ENVO:00002204",
+                    "name": "anthropogenic contamination feature"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00005774"
+                "has_raw_value": "ENVO_00001998",
+                "term": {
+                    "id": "ENVO:00001998",
+                    "name": "soil"
+                }
             },
+            "collected_from": "nmdc:frsite-11-dz388p75",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "Shade23.Cen20.12102015"
+            },
+            "gold_biosample_identifiers": [
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+            ],
+            "insdc_biosample_identifiers": [
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+            "elev": 465.0,
             "geo_loc_name": {
-                "has_raw_value": "USA: Alaska, Fairbanks"
+                "has_raw_value": "USA: Pennsylvania,Borough of Centralia"
             },
             "lat_lon": {
-                "has_raw_value": "65.16148295 -147.4852923",
-                "latitude": 65.16148295,
-                "longitude": -147.4852923
+                "has_raw_value": "40.8012 -76.34256666"
+            },
+            "samp_taxon_id": {
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             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Terrestrial",
             "ecosystem_type": "Soil",
-            "ecosystem_subtype": "Boreal forest/Taiga",
-            "specific_ecosystem": "Bulk soil",
+            "ecosystem_subtype": "Unclassified",
+            "specific_ecosystem": "Unclassified",
             "add_date": "2019-09-03T00:00:00",
-            "habitat": "Subpolar coniferous forest soil",
+            "habitat": "Anthropogenic terrestrial soil",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0240049"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724345"
-            ]
+            "mod_date": "2019-09-03T00:00:00",
+            "ncbi_taxonomy_name": "soil metagenome",
+            "sample_collection_site": "Anthropogenic terrestrial soil"
         },
         {
-            "id": "gold:Gb0315665",
+            "id": "nmdc:bsm-11-mkhf1y21",
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             "description": "Sediment microbial communities from Columbia River, Richland, WA, USA",
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "env_broad_scale": {
-                "has_raw_value": "ENVO:00000873"
+                "has_raw_value": "ENVO_00000873",
+                "term": {
+                    "id": "ENVO:00000873",
+                    "name": "freshwater biome"
+                }
             },
             "env_local_scale": {
-                "has_raw_value": "ENVO:01000687"
+                "has_raw_value": "ENVO_01000687",
+                "term": {
+                    "id": "ENVO:01000687",
+                    "name": "coast"
+                }
             },
             "env_medium": {
-                "has_raw_value": "ENVO:00002007"
+                "has_raw_value": "ENVO_00002007",
+                "term": {
+                    "id": "ENVO:00002007",
+                    "name": "sediment"
+                }
             },
+            "collected_from": "nmdc:frsite-11-hb6gvv08",
             "type": "nmdc:Biosample",
+            "samp_name": {
+                "has_raw_value": "13114.stegen.37.s008"
+            },
+            "gold_biosample_identifiers": [
+                "GOLD:Gb0315665"
+            ],
+            "insdc_biosample_identifiers": [
+                "biosample:SAMEA7724329"
+            ],
             "depth": {
                 "has_raw_value": "0.05",
-                "has_unit": "meter",
-                "has_numeric_value": 0.05
+                "has_unit": "meters"
             },
             "geo_loc_name": {
                 "has_raw_value": "USA: Washington, Richland, Columbia River"
             },
             "lat_lon": {
-                "has_raw_value": "46.37176746 -119.2715916",
-                "latitude": 46.37176746,
-                "longitude": -119.2715916
+                "has_raw_value": "46.37176746 -119.2715916"
+            },
+            "samp_taxon_id": {
+                "has_raw_value": "freshwater sediment metagenome [NCBITaxon:556182]"
             },
             "ecosystem": "Environmental",
             "ecosystem_category": "Aquatic",
@@ -3283,2464 +4882,3248 @@
             "add_date": "2022-04-01T00:00:00",
             "habitat": "Sediment",
             "location": "USA",
-            "mod_date": "2022-04-08T00:00:00",
+            "mod_date": "2022-04-01T00:00:00",
             "ncbi_taxonomy_name": "freshwater sediment metagenome",
-            "GOLD_sample_identifiers": [
-                "gold:Gb0315665"
-            ],
-            "INSDC_biosample_identifiers": [
-                "biosample:SAMEA7724329"
-            ]
-        }
-    ],
-    "study_set": [
-        {
-            "id": "gold:Gs0154244",
-            "description": "The Earth Microbiome Project Multi-omics component (EMP500) involves amplicon and shotgun metagenomic sequencing and metabolomic profiling of over five hundred microbial communities from diverse environments on our planet. We developed new protocols for shotgun metagenomic sequencing and assembly, with the goal of applying this workflow to a range of environmental samples, combined with metabolomic profiling. 16S, 18S, and ITS amplicon sequencing was done in addition. We acquired a set of >500 fresh environmental samples across a range of habitats, with the help of the EMP network of collaborators. A biobank of frozen aliquots for all samples is maintained at UCSD (soil samples stored at the Pacific Northwest National Laboratory) for future methods testing and analysis.",
-            "principal_investigator": {
-                "has_raw_value": "Janet Jansson",
-                "email": "janet.jansson@pnnl.gov",
-                "name": "Janet Jansson"
-            },
-            "title": "Earth Microbiome Project Multi-omics (EMP500)",
-            "type": "nmdc:Study",
-            "GOLD_study_identifiers": [
-                "gold:Gs0154244"
-            ]
+            "sample_collection_site": "river sediment"
         }
     ],
     "omics_processing_set": [
         {
-            "id": "gold:Gp0452544",
-            "name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen01.14102015",
+            "id": "nmdc:omprc-11-33hp8s65",
+            "name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen15.12102015",
             "has_input": [
-                "gold:Gb0239918"
+                "nmdc:bsm-11-zhfprn95"
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-            "mod_date": "2022-04-08T00:00:00",
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-            "ncbi_project_name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen01.14102015",
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+            "instrument_name": "ILLUMINA_NOVA_SEQ_6000",
+            "ncbi_project_name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen15.12102015",
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                 "has_raw_value": "Metagenome"
             },
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
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                 "email": "janet.jansson@pnnl.gov",
                 "name": "Janet Jansson"
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-            "processing_institution": "University of California, San Diego",
+            "processing_institution": "UCSD",
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-            "GOLD_sequencing_project_identifiers": [
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-            "name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen16.12102015",
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+                "nmdc:bsm-11-945xea98"
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             "add_date": "2019-09-03T00:00:00",
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             "part_of": [
-                "gold:Gs0154244"
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                 "email": "janet.jansson@pnnl.gov",
                 "name": "Janet Jansson"
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-            "processing_institution": "University of California, San Diego",
+            "processing_institution": "UCSD",
             "type": "nmdc:OmicsProcessing",
-            "GOLD_sequencing_project_identifiers": [
-                "gold:Gb0239924"
+            "gold_sequencing_project_identifiers": [
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-            "name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen17.12102015",
+            "id": "nmdc:omprc-11-s0cv1b79",
+            "name": "Volcanic soil microbial communities from Hawaii, Kilauea Volcano, USA - King27.Forest.1.8.10",
             "has_input": [
-                "gold:Gb0239925"
+                "nmdc:bsm-11-t6fccs16"
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             },
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
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                 "email": "janet.jansson@pnnl.gov",
                 "name": "Janet Jansson"
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+            "processing_institution": "UCSD",
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-            "GOLD_sequencing_project_identifiers": [
-                "gold:Gb0239925"
+            "gold_sequencing_project_identifiers": [
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-            "name": "Banana cropland soil microbial communities from Singapore - Seedorf71.BP3soil.28",
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+            "name": "Banana cropland soil microbial communities from Singapore - Seedorf71.BP1soil.24",
             "has_input": [
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+            "instrument_name": "ILLUMINA_NOVA_SEQ_6000",
+            "ncbi_project_name": "Banana cropland soil microbial communities from Singapore - Seedorf71.BP1soil.24",
             "omics_type": {
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             },
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
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             "principal_investigator": {
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                 "email": "janet.jansson@pnnl.gov",
                 "name": "Janet Jansson"
             },
-            "processing_institution": "University of California, San Diego",
+            "processing_institution": "UCSD",
             "type": "nmdc:OmicsProcessing",
-            "GOLD_sequencing_project_identifiers": [
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+            "gold_sequencing_project_identifiers": [
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         },
         {
-            "id": "gold:Gp0452712",
-            "name": "Temperate woodland soil microbial communities from Oregon, Jackson County, USA - Myrold59.soil.17.NRCS0386",
+            "id": "nmdc:omprc-11-de0e1v98",
+            "name": "Banana cropland soil microbial communities from Singapore - Seedorf71.BP2soil.26",
             "has_input": [
-                "gold:Gb0240086"
+                "nmdc:bsm-11-r30avh96"
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+            "instrument_name": "ILLUMINA_NOVA_SEQ_6000",
+            "ncbi_project_name": "Banana cropland soil microbial communities from Singapore - Seedorf71.BP2soil.26",
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             },
             "part_of": [
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                 "email": "janet.jansson@pnnl.gov",
                 "name": "Janet Jansson"
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+            "processing_institution": "UCSD",
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+            "gold_sequencing_project_identifiers": [
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         },
         {
-            "id": "gold:Gp0452642",
-            "name": "Oil palm plantation surface soil microbial communities from Singapore - Seedorf71.PP2soil.10",
+            "id": "nmdc:omprc-11-v8hyhp05",
+            "name": "Banana cropland soil microbial communities from Singapore - Seedorf71.JP1soil.18",
             "has_input": [
-                "gold:Gb0240016"
+                "nmdc:bsm-11-qz8y6h55"
             ],
             "add_date": "2019-09-03T00:00:00",
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-            "ncbi_project_name": "Oil palm plantation surface soil microbial communities from Singapore - Seedorf71.PP2soil.10",
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+            "instrument_name": "ILLUMINA_NOVA_SEQ_6000",
+            "ncbi_project_name": "Banana cropland soil microbial communities from Singapore - Seedorf71.JP1soil.18",
             "omics_type": {
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             },
             "part_of": [
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+                "nmdc:sty-11-mee7pd56"
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             "principal_investigator": {
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                 "email": "janet.jansson@pnnl.gov",
                 "name": "Janet Jansson"
             },
-            "processing_institution": "University of California, San Diego",
+            "processing_institution": "UCSD",
             "type": "nmdc:OmicsProcessing",
-            "GOLD_sequencing_project_identifiers": [
-                "gold:Gb0240016"
+            "gold_sequencing_project_identifiers": [
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         },
         {
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                 "name": "Janet Jansson"
             },
-            "processing_institution": "University of California, San Diego",
+            "processing_institution": "UCSD",
             "type": "nmdc:OmicsProcessing",
-            "GOLD_sequencing_project_identifiers": [
-                "gold:Gb0240119"
+            "gold_sequencing_project_identifiers": [
+                "GOLD:Gp0452721"
             ]
         },
         {
-            "id": "gold:Gp0452553",
-            "name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen20.12102015",
+            "id": "nmdc:omprc-11-b2gcs334",
+            "name": "Terrestrial rangeland soil microbial communities from Oregon, Sherman County, USA - Myrold59.soil.8.NRCS0176",
             "has_input": [
-                "gold:Gb0239927"
+                "nmdc:bsm-11-27qv4t76"
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-                "nmdc:43cf30fae24adfea08ad1b0abfcb73ce"
-            ],
-            "ncbi_project_name": "Anthropogenic terrestrial soil microbial communities from Pennsylvania, USA - Shade23.Cen20.12102015",
+            "mod_date": "2019-09-03T00:00:00",
+            "instrument_name": "ILLUMINA_NOVA_SEQ_6000",
+            "ncbi_project_name": "Terrestrial rangeland soil microbial communities from Oregon, Sherman County, USA - Myrold59.soil.8.NRCS0176",
             "omics_type": {
                 "has_raw_value": "Metagenome"
             },
             "part_of": [
-                "gold:Gs0154244"
+                "nmdc:sty-11-mee7pd56"
             ],
             "principal_investigator": {
                 "has_raw_value": "Janet Jansson",
                 "email": "janet.jansson@pnnl.gov",
                 "name": "Janet Jansson"
             },
-            "processing_institution": "University of California, San Diego",
+            "processing_institution": "UCSD",
             "type": "nmdc:OmicsProcessing",
-            "GOLD_sequencing_project_identifiers": [
-                "gold:Gb0239927"
+            "gold_sequencing_project_identifiers": [
+                "GOLD:Gp0452726"
+            ]
+        }
+    ],
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+        {
+            "id": "nmdc:sty-11-mee7pd56",
+            "name": "Earth Microbiome Project Multi-omics (EMP500)",
+            "description": "The Earth Microbiome Project Multi-omics component (EMP500) involves amplicon and shotgun metagenomic sequencing and metabolomic profiling of over five hundred microbial communities from diverse environments on our planet. We developed new protocols for shotgun metagenomic sequencing and assembly, with the goal of applying this workflow to a range of environmental samples, combined with metabolomic profiling. 16S, 18S, and ITS amplicon sequencing was done in addition. We acquired a set of >500 fresh environmental samples across a range of habitats, with the help of the EMP network of collaborators. A biobank of frozen aliquots for all samples is maintained at UCSD (soil samples stored at the Pacific Northwest National Laboratory) for future methods testing and analysis.",
+            "gold_study_identifiers": [
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+            ],
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+                "email": "janet.jansson@pnnl.gov",
+                "name": "Janet Jansson"
+            },
+            "title": "Earth Microbiome Project Multi-omics (EMP500)",
+            "websites": [
+                "https://earthmicrobiome.org",
+                "https://qiita.ucsd.edu/study/description/13114"
+            ],
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+                    },
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+                        "Supervision",
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+                        "Visualization",
+                        "Writing original draft",
+                        "Writing review and editing"
+                    ]
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+                        "name": "Louis-Félix Nothias"
+                    },
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+                        "Formal Analysis",
+                        "Investigation",
+                        "Methodology",
+                        "Software",
+                        "Validation",
+                        "Visualization",
+                        "Writing original draft",
+                        "Writing review and editing"
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+                        "Data curation",
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+                        "Project administration",
+                        "Supervision",
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+                        "Writing review and editing",
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+                        "name": "Qiyun Zhu"
+                    },
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+                        "Formal Analysis",
+                        "Methodology",
+                        "Software",
+                        "Writing review and editing"
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+                },
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+                        "email": "cmartino@eng.ucsd.edu",
+                        "name": "Cameron Martino"
+                    },
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+                        "Formal Analysis",
+                        "Writing review and editing"
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+                        "email": "jmorton@flatironinstitute.org",
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+                        "Methodology",
+                        "Writing review and editing"
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+                        "name": "Smruthi Karthikeyan"
+                    },
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+                        "Formal Analysis",
+                        "Writing review and editing"
+                    ]
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+                        "name": "Mélissa Nothias-Esposito"
+                    },
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+                    ]
+                },
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+                        "email": "kai.duehrkop@uni-jena.de",
+                        "name": "Kai Dührkop"
+                    },
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+                        "Methodology",
+                        "Writing review and editing"
+                    ]
+                },
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+                        "email": "sebastian.boecker@uni-jena.de",
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+                    },
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+                        "Methodology",
+                        "Writing review and editing"
+                    ]
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+                {
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+                        "email": "hwkim@ucsd.edu",
+                        "name": "Hyunwoo Kim"
+                    },
+                    "applied_roles": [
+                        "Methodology",
+                        "Validation",
+                        "Writing review and editing"
+                    ]
+                },
+                {
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+                        "email": "aaksenov@uconn.edu",
+                        "name": "Alexander A. Aksenov"
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+                        "Methodology",
+                        "Validation",
+                        "Writing review and editing"
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+                },
+                {
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+                        "email": "wbittremieux@health.ucsd.edu",
+                        "name": "Wout Bittremieux"
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+                        "Formal Analysis",
+                        "Validation",
+                        "Writing review and editing"
+                    ]
+                },
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+                        "email": "Jeremiah.minich@gmail.com",
+                        "name": "Jeremiah J. Minich"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
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+                        "email": "cmarotz@health.ucsd.edu",
+                        "name": "Clarisse Marotz"
+                    },
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+                        "Data curation",
+                        "Methodology",
+                        "Validation"
+                    ]
+                },
+                {
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+                        "email": "mmbryant@ucsd.edu",
+                        "name": "MacKenzie M. Bryant"
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+                        "Data curation"
+                    ]
+                },
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+                        "name": "Karenina Sanders"
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+                        "Data curation"
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+                },
+                {
+                    "applies_to_person": {
+                        "email": "taraschwartz86@gmail.com",
+                        "name": "Tara Schwartz"
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+                        "Data curation"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "gchumphrey@health.ucsd.edu",
+                        "name": "Greg Humphrey"
+                    },
+                    "applied_roles": [
+                        "Data curation",
+                        "Methodology",
+                        "Supervision",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "yoshiki@eng.ucsd.edu",
+                        "name": "Yoshiki Vasquez-Baeza"
+                    },
+                    "applied_roles": [
+                        "Formal Analysis",
+                        "Visualization"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "a3tripat@ucsd.edu",
+                        "name": "Anupriya Tripathi"
+                    },
+                    "applied_roles": [
+                        "Formal Analysis",
+                        "Visualization"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "orcid": "0000-0002-7872-5074",
+                        "email": "parida@us.ibm.com",
+                        "name": "Laxmi Parida"
+                    },
+                    "applied_roles": [
+                        "Formal Analysis",
+                        "Methodology",
+                        "Software",
+                        "Visualization",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "orcid": "0000-0003-2349-1896",
+                        "email": "acarrieri@uk.ibm.com",
+                        "name": "Anna Paola Carrieri"
+                    },
+                    "applied_roles": [
+                        "Formal Analysis",
+                        "Methodology",
+                        "Software",
+                        "Visualization",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "orcid": "0000-0002-8663-1019",
+                        "email": "nshaimin@us.ibm.com",
+                        "name": "Niina Haiminen"
+                    },
+                    "applied_roles": [
+                        "Formal Analysis",
+                        "Methodology",
+                        "Software",
+                        "Visualization",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "orcid": "0000-0002-4603-0235",
+                        "email": "klbeck@us.ibm.com",
+                        "name": "Kristen L.. Beck"
+                    },
+                    "applied_roles": [
+                        "Formal Analysis",
+                        "Methodology",
+                        "Software",
+                        "Visualization",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "orcid": "0000-0001-6733-2059",
+                        "email": "prdas@health.ucsd.edu",
+                        "name": "Promi Das"
+                    },
+                    "applied_roles": [
+                        "Formal Analysis",
+                        "Writing original draft"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "antgonza@gmail.com",
+                        "name": "Antonio Gonzalez"
+                    },
+                    "applied_roles": [
+                        "Data curation",
+                        "Formal Analysis",
+                        "Investigation",
+                        "Software",
+                        "Validation",
+                        "Visualization",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "orcid": "0000-0003-0876-9060",
+                        "email": "danielmcdonald@ucsd.edu",
+                        "name": "Daniel McDonald"
+                    },
+                    "applied_roles": [
+                        "Formal Analysis",
+                        "Investigation",
+                        "Software",
+                        "Validation",
+                        "Visualization",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "sorenkarst@gmail.com",
+                        "name": "Søren Michael. Karst"
+                    },
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+                        "Data curation",
+                        "Investigation",
+                        "Methodology",
+                        "Validation",
+                        "Writing review and editing",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "ma@bio.aau.dk",
+                        "name": "Mads Albertsen"
+                    },
+                    "applied_roles": [
+                        "Data curation",
+                        "Investigation",
+                        "Methodology",
+                        "Validation",
+                        "Writing review and editing",
+                        "Writing review and editing"
+                    ]
+                },
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+                        "email": "ackermag@ucsd.edu",
+                        "name": "Gail Ackermann"
+                    },
+                    "applied_roles": [
+                        "Data curation",
+                        "Validation",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "jdereus@health.ucsd.edu",
+                        "name": "Jeff DeReus"
+                    },
+                    "applied_roles": [
+                        "Data curation",
+                        "Validation"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "orcid": "0000-0001-9557-3001‬",
+                        "email": "t.thomas@unsw.edu.au",
+                        "name": "Torsten Thomas"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing original draft",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "orcid": "0000-0002-6561-3022",
+                        "email": "functionalmetabolomics@gmail.com",
+                        "name": "Daniel Petras"
+                    },
+                    "applied_roles": [
+                        "Formal Analysis",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "orcid": "0000-0002-7189-3067",
+                        "email": "shadeash@msu.edu",
+                        "name": "Ashley Shade"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "James.Stegen@pnnl.gov",
+                        "name": "James Stegen"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
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+                        "email": "Sjsong@eng.ucsd.edu",
+                        "name": "Se Jin Song"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
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+                        "email": "thomas.metz@pnnl.gov",
+                        "name": "Thomas O. Metz"
+                    },
+                    "applied_roles": [
+                        "Data curation",
+                        "Investigation",
+                        "Methodology",
+                        "Project administration",
+                        "Supervision",
+                        "Validation",
+                        "Writing review and editing"
+                    ]
+                },
+                {
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+                        "email": "adswafford@ucsd.edu",
+                        "name": "Austin D. Swafford"
+                    },
+                    "applied_roles": [
+                        "Project administration",
+                        "Resources",
+                        "Supervision",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "pdorrestein@health.ucsd.edu",
+                        "name": "Pieter C. Dorrestein"
+                    },
+                    "applied_roles": [
+                        "Project administration",
+                        "Resources",
+                        "Supervision",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "janet.jansson@pnnl.gov",
+                        "name": "Janet K. Jansson"
+                    },
+                    "applied_roles": [
+                        "Conceptualization",
+                        "Funding acquisition",
+                        "Methodology",
+                        "Project administration",
+                        "Resources",
+                        "Supervision",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "gilbertjack@gmail.com",
+                        "name": "Jack A. Gilbert"
+                    },
+                    "applied_roles": [
+                        "Conceptualization",
+                        "Funding acquisition",
+                        "Methodology",
+                        "Project administration",
+                        "Resources",
+                        "Supervision",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "robknight@ucsd.edu",
+                        "name": "Rob Knight"
+                    },
+                    "applied_roles": [
+                        "Conceptualization",
+                        "Funding acquisition",
+                        "Methodology",
+                        "Project administration",
+                        "Resources",
+                        "Supervision",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "l.angenent@uni-tuebingen.de",
+                        "name": "Lars T. Angenant"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "amberry@ucdavis.edu",
+                        "name": "Alison M. Berry"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "leobit@gmail.com",
+                        "name": "Leonora S. Bittleston"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "je.bowen@northeastern.edu",
+                        "name": "Jennifer L. Bowen"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "max.chavarria@ucr.ac.cr",
+                        "name": "Max Chavarría"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "don.cowan@up.ac.za",
+                        "name": "Don A. Cowan"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "d.distel@neu.edu",
+                        "name": "Dan Distel"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "pgirguis@oeb.harvard.edu",
+                        "name": "Peter R. Girguis"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
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+                        "email": "huerta.jaime@inia.es",
+                        "name": "Jaime Huerta-Cepas"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "pjensen@ucsd.edu",
+                        "name": "Paul R. Jensen"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "ljiang53@its.jnj.com",
+                        "name": "Lingjing Jiang"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "gking@lsu.edu",
+                        "name": "Gary M. King"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "anton.1.lavrinienko@jyu.fi",
+                        "name": "Anton Lavrinienko"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "aurorama@sas.upenn.edu",
+                        "name": "Aurora MacRae-Crerar"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "thulani.makhalanyane@up.ac.za",
+                        "name": "Thulani P. Makhalanyane"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "tapio.mappes@jyu.fi",
+                        "name": "Tapio Mappes"
+                    },
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+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "e.marzinelli@sydney.edu.au",
+                        "name": "Ezequiel M. Marzinelli"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "greg.mayer@ttu.edu",
+                        "name": "Gregory Mayer"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "trina.mcmahon@wisc.edu",
+                        "name": "Katherine D. McMahon"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "jessicalmetcalf@gmail.com",
+                        "name": "Jessica L. Metcalf"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "sou.miyake@kaust.edu.sa",
+                        "name": "Sou Miyake"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "mousseau@sc.edu",
+                        "name": "Timothy A. Mousseau"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "catalina.murillocruz@ucr.ac.cr",
+                        "name": "Catalina Murillo-Cruz"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "david.myrold@oregonstate.edu",
+                        "name": "David Myrold"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "bpalenik@ucsd.edu",
+                        "name": "Brian Palenik"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "adrian.pinto@ucr.ac.cr",
+                        "name": "Adrián A. Pinto-Tomás"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "dorotalp@ufl.edu",
+                        "name": "Dorota L. Porazinska"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "jbramond@bio.puc.cl",
+                        "name": "Jean-Baptiste Ramond"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "frohwer@gmail.com",
+                        "name": "Forest Rohwer"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "roychowdhuryt.05@gmail.com",
+                        "name": "Taniya RoyChowdhury"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "ssandin@ucsd.edu",
+                        "name": "Stuart A. Sandin"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "steve.schmidt@colorado.edu",
+                        "name": "Steven K. Schmidt"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "henning@tll.org.sg",
+                        "name": "Henning Seedorf"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "reuben.shipway@plymouth.ac.uk",
+                        "name": "J. Reuben. Shipway"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "smithj@ucsd.edu",
+                        "name": "Jennifer E. Smith"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "frank.stewart@montana.edu",
+                        "name": "Frank J. Stewart"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "ktait@pml.ac.uk",
+                        "name": "Karen Tait"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "yael.tucker@netl.doe.gov",
+                        "name": "Yael Tucker"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "juren@email.arizona.edu",
+                        "name": "Jana M. U'Ren"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "phillip.c.watts@jyu.fi",
+                        "name": "Phillip C. Watts"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "Nicole.webster@aad.gov.au",
+                        "name": "Nicole S. Webster"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "zaneveld@uw.edu",
+                        "name": "Jesse R. Zaneveld"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                },
+                {
+                    "applies_to_person": {
+                        "email": "shan.zhang@student.unsw.edu.au",
+                        "name": "Shan Zhang"
+                    },
+                    "applied_roles": [
+                        "Resources",
+                        "Writing review and editing"
+                    ]
+                }
             ]
         }
     ]
diff --git a/tests/test_gold_nmdc_pipeline.py b/tests/test_gold_nmdc_pipeline.py
index d09804b..7d8bddb 100644
--- a/tests/test_gold_nmdc_pipeline.py
+++ b/tests/test_gold_nmdc_pipeline.py
@@ -41,4 +41,4 @@ def test_gold_nmdc_client(self):
             self.assertTrue(filecmp.cmp(file_path, OUTPUT_NMDC_JSON))
 
             # assert that tempfile validates against NMDC schema
-            self.assertTrue(gc.validate_nmdc(file_name=file_path))
+            self.assertTrue(gc.validate_nmdc(file_path=file_path))
\ No newline at end of file