From 4bcec63e51eb575d41b2e92354ae225fbaaef0ed Mon Sep 17 00:00:00 2001 From: Katherine Heal Date: Wed, 8 May 2024 12:40:11 -0700 Subject: [PATCH] Add check to prevent key errors for lacking metadata --- ...eon_soil_metadata_visual_exploration.ipynb | 931 +++++++++--------- 1 file changed, 472 insertions(+), 459 deletions(-) diff --git a/NEON_soil_metadata/python/neon_soil_metadata_visual_exploration.ipynb b/NEON_soil_metadata/python/neon_soil_metadata_visual_exploration.ipynb index e606937e..052b32f1 100644 --- a/NEON_soil_metadata/python/neon_soil_metadata_visual_exploration.ipynb +++ b/NEON_soil_metadata/python/neon_soil_metadata_visual_exploration.ipynb @@ -12,7 +12,7 @@ }, { "cell_type": "code", - "execution_count": 2, + "execution_count": 1, "id": "67e8319d-fabe-4bb7-9dbf-20614573a5ce", "metadata": { "tags": [] @@ -40,7 +40,7 @@ }, { "cell_type": "code", - "execution_count": 9, + "execution_count": 2, "id": "01a8e74a-f07e-4cbf-8fe4-3ed833340118", "metadata": { "tags": [] @@ -80,7 +80,7 @@ }, { "cell_type": "code", - "execution_count": 11, + "execution_count": 3, "id": "218f7a63-e63b-46c1-902e-c44d456b69b8", "metadata": { "tags": [] @@ -90,7 +90,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "Total number of biosamples: 4443\n" + "Total number of biosamples: 4475\n" ] } ], @@ -129,7 +129,7 @@ }, { "cell_type": "code", - "execution_count": 14, + "execution_count": 4, "id": "a7fc796f-8616-41ca-8689-e8f60add4f2e", "metadata": { "tags": [] @@ -141,7 +141,8 @@ "text": [ "Number of NEON coordinates: 495\n", "Number of geo locations (sites): 47\n", - "Number of dates: 4220\n" + "Number of dates: 4220\n", + "Total number of biosamples with sufficient metadata: 4443\n" ] } ], @@ -152,14 +153,19 @@ "coordinates = set()\n", "geo_locs = set()\n", "dates = set()\n", + "all_full_results = []\n", "for samp in all_results:\n", - " lat_lon = f\"{samp['lat_lon']['latitude']},{samp['lat_lon']['longitude']}\"\n", - " coordinates.add(lat_lon)\n", - " geo_locs.add(samp[\"geo_loc_name\"][\"has_raw_value\"])\n", - " dates.add(samp[\"collection_date\"][\"has_raw_value\"])\n", + " # Check if samp has keys that correspond to primary metadata\n", + " if set(['lat_lon', 'geo_loc_name', 'collection_date']).issubset(samp):\n", + " lat_lon = f\"{samp['lat_lon']['latitude']},{samp['lat_lon']['longitude']}\"\n", + " coordinates.add(lat_lon)\n", + " geo_locs.add(samp[\"geo_loc_name\"][\"has_raw_value\"])\n", + " dates.add(samp[\"collection_date\"][\"has_raw_value\"])\n", + " all_full_results.append(samp) \n", "print(f\"Number of NEON coordinates: {len(coordinates)}\")\n", "print(f\"Number of geo locations (sites): {len(geo_locs)}\")\n", - "print(f\"Number of dates: {len(dates)}\")" + "print(f\"Number of dates: {len(dates)}\")\n", + "print(f\"Total number of biosamples with sufficient metadata: {len(all_full_results)}\")" ] }, { @@ -174,7 +180,7 @@ }, { "cell_type": "code", - "execution_count": 15, + "execution_count": 5, "id": "8a70709a-922d-4391-9a50-6e2f326aae1b", "metadata": { "tags": [] @@ -189,7 +195,7 @@ } ], "source": [ - "print(all_results[0])" + "print(all_full_results[0])" ] }, { @@ -203,7 +209,7 @@ }, { "cell_type": "code", - "execution_count": 21, + "execution_count": 6, "id": "fd34f79b-4060-4c8f-8eaa-bbb5c4ae1fd7", "metadata": { "tags": [] @@ -422,7 +428,7 @@ "[4443 rows x 9 columns]" ] }, - "execution_count": 21, + "execution_count": 6, "metadata": {}, "output_type": "execute_result" } @@ -432,7 +438,7 @@ "# Transform results to desired format and convert to a data frame\n", "df_inp = []\n", "water_content_units = \"g of water/g of dry soil\"\n", - "for biosamp in all_results:\n", + "for biosamp in all_full_results:\n", "\n", " # Get only month, day, and year from collection_date (remove times)\n", " date = datetime.strptime(biosamp[\"collection_date\"][\"has_raw_value\"],\"%Y-%m-%dT%H:%MZ\")\n", @@ -477,7 +483,7 @@ }, { "cell_type": "code", - "execution_count": 22, + "execution_count": 7, "id": "7e1d1743-9d5f-4aad-a529-c4d66f12edc6", "metadata": { "tags": [] @@ -537,7 +543,7 @@ }, { "cell_type": "code", - "execution_count": 23, + "execution_count": 8, "id": "8fe7ebd7-0b17-46f5-9850-e3febbfec5c2", "metadata": { "tags": [] @@ -573,7 +579,7 @@ " <meta name="viewport" content="width=device-width,\n", " initial-scale=1.0, maximum-scale=1.0, user-scalable=no" />\n", " <style>\n", - " #map_bf3228b42f6b7b7840b342c4809e618b {\n", + " #map_5b91f09f8bec4470491461b35a907003 {\n", " position: relative;\n", " width: 100.0%;\n", " height: 100.0%;\n", @@ -584,7 +590,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_69efe68c6f3cecfeac847aafbce66e2e {\n", + " <style> #vega_lite_4baf1c4259aed85b739eb1adaef910f3 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -596,7 +602,7 @@ " <script src="https://cdn.jsdelivr.net/npm/vega-lite@5"></script>\n", " <script src="https://cdn.jsdelivr.net/npm/vega-embed@6"></script>\n", " \n", - " <style> #vega_lite_c5953db567d93444e6d9bdd5cd02ddd6 {\n", + " <style> #vega_lite_42dae45933e30ed21f7cdc66a2104a61 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -605,7 +611,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_f54443c4b78cd4b6460e84c53c628a00 {\n", + " <style> #vega_lite_591a04185a7749f337bf6405dc04444f {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -614,7 +620,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_13f1b6f935ad48f6967b408c3ed8b0de {\n", + " <style> #vega_lite_f0e22f44957951e6f2cc25fc0d417cd7 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -623,7 +629,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_cfff008f3b91fc0c915ca40674d79894 {\n", + " <style> #vega_lite_c0cec7785269c414ce2e66a38c16874f {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -632,7 +638,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_dd4c55d5ebd93604babe4090bdb28002 {\n", + " <style> #vega_lite_cff6cbb6153aec4743390d77ee7aed72 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -641,7 +647,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_8a9a0915b6a09d6ac7320bff4c7798cd {\n", + " <style> #vega_lite_9972d4303258f8d3cb5c5aa399b8d135 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -650,7 +656,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_c17cd0c8f9fc26a92a93dd0512e63abe {\n", + " <style> #vega_lite_4bb002d5002302549a2a9a091a2e2be4 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -659,7 +665,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_a072a2ab6f7d1f4deca0f87c4fb1939d {\n", + " <style> #vega_lite_3f8ab5b27f6158dd4463f7362a57b119 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -668,7 +674,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_0b92bfbecd8ea5367586038c76db77d5 {\n", + " <style> #vega_lite_8fd61d073a34b84cdf962091077bb068 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -677,7 +683,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_9864acf2ad38da8dc934f89d7d1f8756 {\n", + " <style> #vega_lite_e8b77952360c1bc717c69f9881e6616c {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -686,7 +692,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_93992ceebd2915da7d82edd10fa874f0 {\n", + " <style> #vega_lite_9ef88dab0c6c008b25c38138a6871b85 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -695,7 +701,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_19cc035cc9a2ae3ae6c9ab0f921f33cc {\n", + " <style> #vega_lite_6234bd26745b0aef4312447a56818178 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -704,7 +710,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_432639873f39fb57c18dc403d46320c9 {\n", + " <style> #vega_lite_713989d424201c2c1cc6d9916b4845de {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -713,7 +719,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_cf3a261956cca74ebdc5daba3b4cca78 {\n", + " <style> #vega_lite_42c44daf29d3b3c2a9db95b4ba78fc21 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -722,7 +728,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_9ce7170db53d34108a863c7ca42fdd34 {\n", + " <style> #vega_lite_4e1885aed1a39b7ddb6a31ef25b6493a {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -731,7 +737,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_0a6da78cbab00cfdf0988ee8002567f3 {\n", + " <style> #vega_lite_e530306f2ab5db7382a50b5400e0d68f {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -740,7 +746,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_868e808e60ac73822d9c2217011159af {\n", + " <style> #vega_lite_a3f4584931e96a0824fbec94e1ef732d {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -749,7 +755,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_82c0e54a45997c035c5bdfa273e5e6de {\n", + " <style> #vega_lite_bca0debe418d3e54b8528e49db96f7bd {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -758,7 +764,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_a849daf7b400d13d1183bfd2d12e1b7a {\n", + " <style> #vega_lite_c4e92c511bc0cfcf6ca6114ed67dea71 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -767,7 +773,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_d22a7d4d7cd26f01b05cd606a571570f {\n", + " <style> #vega_lite_90a46ff242b082a9ff939e946fc0c5b7 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -776,7 +782,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_007f084dbad8eb78a31f596e3d4dcf19 {\n", + " <style> #vega_lite_e4192619d4b6c50479feb8c6235ecbaa {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -785,7 +791,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_ca5e873af0d761059ac909a11fd0a754 {\n", + " <style> #vega_lite_da6049f8714df0da2ab9693a92426947 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -794,7 +800,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_0aad0e617f4be8e1bca7ccb71e71d61b {\n", + " <style> #vega_lite_e48fd45971a94164c4c953d1ae8b9dbb {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -803,7 +809,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_5695e6af2bde0852fa06b14a5db7177a {\n", + " <style> #vega_lite_6e194634122e767aa59e2c21cbfa9190 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -812,7 +818,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_8a88078c8fee5aad8fab1b49966bd446 {\n", + " <style> #vega_lite_0cda896c1c223cee5ed35a192af43832 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -821,7 +827,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_32409090001d59c6898946bfccae0356 {\n", + " <style> #vega_lite_396abe92ce10261fb0d440550cfcb4b8 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -830,7 +836,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_d39c235fe185dc42cb8ec6764a4db885 {\n", + " <style> #vega_lite_3570200a96009e4d7d5923ca96c50a19 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -839,7 +845,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_8a939843a4171fd14bb0e078dfd04a2d {\n", + " <style> #vega_lite_0d8df7bdb7c1b523e73abbf02e0ce8aa {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -848,7 +854,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_4963a479402be2cedbd6901ae888fce8 {\n", + " <style> #vega_lite_42d0745cb03dbce60c00ea63c76d6e4b {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -857,7 +863,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_13f35cf7173f0c8d66c2b480b90b8236 {\n", + " <style> #vega_lite_893dda0dc64bc47f1168df160a9d31c1 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -866,7 +872,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_9cc3fecd5b5ab0f220ad888324f65b71 {\n", + " <style> #vega_lite_b200554b311ce8b973a9cc8aac24fbd0 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -875,7 +881,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_44be185514609429e132fe80402e8c65 {\n", + " <style> #vega_lite_9805a480253e62bad01f975479ab244e {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -884,7 +890,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_dbbe2c7d64a25252a3ee3d50c17a4f42 {\n", + " <style> #vega_lite_cb5ceb31aed6b3048588b824a5071623 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -893,7 +899,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_8b8f030eaf1967626bb506e9ff5fb9aa {\n", + " <style> #vega_lite_5eee1ffeff85398e238c22cf572d56e9 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -902,7 +908,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_904bba73e6e6945586f6e57225a7dfb1 {\n", + " <style> #vega_lite_b9e98007e592301ae4d5dc0903a76878 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -911,7 +917,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_2ab03f60470211280a044c18e5237ca7 {\n", + " <style> #vega_lite_b30644437941f9ff36c9be9692e51c8e {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -920,7 +926,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_048c34fea0f46482fcc9e02a43f00c1b {\n", + " <style> #vega_lite_17601b459c20082dc73b5cde10606e08 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -929,7 +935,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_c3d90173488d3bcd124101ea01d71a4d {\n", + " <style> #vega_lite_6aca2579cd8efc1f5d29d55db2f4aca4 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -938,7 +944,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_eea447c4e5a2564e25b8db1db5c3f49c {\n", + " <style> #vega_lite_7b61ce70b17d2d3afb2507ac86997d38 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -947,7 +953,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_3aabe60f82d6cd741e83327ec2d4c02e {\n", + " <style> #vega_lite_b0da656c3fab6db334943c029deb7094 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -956,7 +962,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_7f001d182ae12b92734db2d88b21a4b2 {\n", + " <style> #vega_lite_dc026286b4a910be657c4a7470b39f73 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -965,7 +971,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_a16cf0eb44745e7da1620cb45eb3f978 {\n", + " <style> #vega_lite_2500a36990445f2fb9574d741a95364f {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -974,7 +980,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_4afe4c987b3af941f070ff6c9571a1b0 {\n", + " <style> #vega_lite_9fd863c632e35097f1073c7b68a9d159 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -983,7 +989,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_a6906729400e4048bb6267bee90e3a99 {\n", + " <style> #vega_lite_f74a2e9a903fdd61353f87f4630df457 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -992,7 +998,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_1092c8f23498dd47480e729a7893e23f {\n", + " <style> #vega_lite_8ce1b5c0d50c23eb3dbff0e085461b55 {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -1001,7 +1007,7 @@ " </style>\n", " \n", " \n", - " <style> #vega_lite_739815f6865f2256d8f2a0cf3de3f1f6 {\n", + " <style> #vega_lite_b9ad9afd3f5e258bbb625b697ac58a3e {\n", " position : relative;\n", " width : 100.0%;\n", " height: 100.0%;\n", @@ -1013,14 +1019,14 @@ "<body>\n", " \n", " \n", - " <div class="folium-map" id="map_bf3228b42f6b7b7840b342c4809e618b" ></div>\n", + " <div class="folium-map" id="map_5b91f09f8bec4470491461b35a907003" ></div>\n", " \n", "</body>\n", "<script>\n", " \n", " \n", - " var map_bf3228b42f6b7b7840b342c4809e618b = L.map(\n", - " "map_bf3228b42f6b7b7840b342c4809e618b",\n", + " var map_5b91f09f8bec4470491461b35a907003 = L.map(\n", + " "map_5b91f09f8bec4470491461b35a907003",\n", " {\n", " center: [45.0, -112.0],\n", " crs: L.CRS.EPSG3857,\n", @@ -1029,25 +1035,25 @@ " preferCanvas: false,\n", " }\n", " );\n", - " L.control.scale().addTo(map_bf3228b42f6b7b7840b342c4809e618b);\n", + " L.control.scale().addTo(map_5b91f09f8bec4470491461b35a907003);\n", "\n", " \n", "\n", " \n", " \n", - " var tile_layer_904c9bf1e9c0ae2a1e9c1f4423e35f61 = L.tileLayer(\n", + " var tile_layer_7f60de38d485e7a2c195688ed271a739 = L.tileLayer(\n", " "https://server.arcgisonline.com/ArcGIS/rest/services/World_Imagery/MapServer/tile/{z}/{y}/{x}",\n", " {"attribution": "Tiles \\u0026copy; Esri \\u0026mdash; Source: Esri, i-cubed, USDA, USGS, AEX, GeoEye, Getmapping, Aerogrid, IGN, IGP, UPR-EGP, and the GIS User Community", "detectRetina": false, "maxNativeZoom": 18, "maxZoom": 18, "minZoom": 0, "noWrap": false, "opacity": 1, "subdomains": "abc", "tms": false}\n", - " ).addTo(map_bf3228b42f6b7b7840b342c4809e618b);\n", + " ).addTo(map_5b91f09f8bec4470491461b35a907003);\n", " \n", " \n", - " var marker_1c51ad2f7059dc22f33aa84fbe5e8b95 = L.marker(\n", + " var marker_efdc644deaef4f431af5b02ad4d8258e = L.marker(\n", " [32.5345006440678, -87.81076959322036],\n", " {}\n", - " ).addTo(map_bf3228b42f6b7b7840b342c4809e618b);\n", + " ).addTo(map_5b91f09f8bec4470491461b35a907003);\n", " \n", " \n", - " marker_1c51ad2f7059dc22f33aa84fbe5e8b95.bindTooltip(\n", + " marker_efdc644deaef4f431af5b02ad4d8258e.bindTooltip(\n", " `<div>\n", " click me!\n", " </div>`,\n", @@ -1055,34 +1061,34 @@ " );\n", " \n", " \n", - " var popup_ab92542500354fcffeba540dd01fff07 = L.popup({"maxWidth": "100%"});\n", + " var popup_df6598bd154181f7cb56479e8e1c9ff0 = L.popup({"maxWidth": "100%"});\n", "\n", " \n", " \n", - " var vega_lite_69efe68c6f3cecfeac847aafbce66e2e = $(` <div id="vega_lite_69efe68c6f3cecfeac847aafbce66e2e"></div> `)[0];\n", - " popup_ab92542500354fcffeba540dd01fff07.setContent(vega_lite_69efe68c6f3cecfeac847aafbce66e2e);\n", + " var vega_lite_4baf1c4259aed85b739eb1adaef910f3 = $(` <div id="vega_lite_4baf1c4259aed85b739eb1adaef910f3"></div> `)[0];\n", + " popup_df6598bd154181f7cb56479e8e1c9ff0.setContent(vega_lite_4baf1c4259aed85b739eb1adaef910f3);\n", " \n", " \n", "\n", - " marker_1c51ad2f7059dc22f33aa84fbe5e8b95.bindPopup(popup_ab92542500354fcffeba540dd01fff07)\n", + " marker_efdc644deaef4f431af5b02ad4d8258e.bindPopup(popup_df6598bd154181f7cb56479e8e1c9ff0)\n", " ;\n", "\n", " \n", " \n", - " vegaEmbed(vega_lite_69efe68c6f3cecfeac847aafbce66e2e, {"$schema": "https://vega.github.io/schema/vega-lite/v5.15.1.json", "config": {"view": {"continuousHeight": 300, "continuousWidth": 300}}, "data": {"name": "data-95ee4e221e54da851a0d4362ed9339cf"}, "datasets": {"data-95ee4e221e54da851a0d4362ed9339cf": [{"collection_date": "2016-08-24", "elev": 27.1, "id": "nmdc:bsm-11-0d6dns65", "latitude": 32.539627, "location": "USA: Alabama, Dead Lake", "longitude": -87.801968, "ph": 5.89, "soil_horizon": "M horizon", "water_content": 0.235}, {"collection_date": "2016-08-25", "elev": 27.2, "id": "nmdc:bsm-11-29p1bh61", "latitude": 32.523355, "location": "USA: Alabama, Dead Lake", "longitude": -87.814626, "ph": 6.79, "soil_horizon": "M horizon", "water_content": 0.57}, {"collection_date": "2019-06-26", "elev": 28.6, "id": "nmdc:bsm-11-2kd3pz10", "latitude": 32.532072, "location": "USA: Alabama, Dead Lake", "longitude": -87.805439, "ph": 7.19, "soil_horizon": "M horizon", "water_content": 0.181}, {"collection_date": "2016-08-25", "elev": 28.6, "id": "nmdc:bsm-11-43mzy230", "latitude": 32.532072, "location": "USA: Alabama, Dead Lake", "longitude": -87.805439, "ph": 6.53, "soil_horizon": "M horizon", "water_content": 0.621}, {"collection_date": "2016-08-24", "elev": 24.6, "id": "nmdc:bsm-11-4pjrvp69", "latitude": 32.531982, "location": "USA: Alabama, Dead Lake", "longitude": -87.81434, "ph": 6.44, "soil_horizon": "M horizon", "water_content": 0.248}, {"collection_date": "2019-06-26", "elev": 27.1, "id": "nmdc:bsm-11-4zryzk48", "latitude": 32.539627, "location": "USA: Alabama, Dead Lake", "longitude": -87.801968, "ph": 6.23, "soil_horizon": "M horizon", "water_content": 0.318}, {"collection_date": "2019-06-26", "elev": 25.5, "id": "nmdc:bsm-11-55v5qf82", "latitude": 32.54229, "location": "USA: Alabama, Dead Lake", "longitude": -87.806804, "ph": 5.5, "soil_horizon": "M horizon", "water_content": 0.331}, {"collection_date": "2019-06-26", "elev": 29.4, "id": "nmdc:bsm-11-5knfsm07", "latitude": 32.538802, "location": "USA: Alabama, Dead Lake", "longitude": -87.804522, "ph": 5.78, "soil_horizon": "M horizon", "water_content": 0.299}, {"collection_date": "2016-08-25", "elev": 28.6, "id": "nmdc:bsm-11-5m8fh115", "latitude": 32.532072, "location": "USA: Alabama, Dead Lake", "longitude": -87.805439, "ph": 7.02, "soil_horizon": "M horizon", "water_content": 0.589}, {"collection_date": "2016-08-25", "elev": 24.0, "id": "nmdc:bsm-11-5mrbvf40", "latitude": 32.532479, "location": "USA: Alabama, Dead Lake", "longitude": -87.818534, "ph": 6.05, "soil_horizon": "M horizon", "water_content": 0.791}, {"collection_date": "2016-08-24", "elev": 25.1, "id": "nmdc:bsm-11-65eyyh90", "latitude": 32.534942, "location": "USA: Alabama, Dead Lake", "longitude": -87.815024, "ph": 5.94, "soil_horizon": "M horizon", "water_content": 0.224}, {"collection_date": "2016-08-25", "elev": 28.6, "id": "nmdc:bsm-11-6chdzt41", "latitude": 32.532072, "location": "USA: Alabama, Dead Lake", "longitude": -87.805439, "ph": 7.0, "soil_horizon": "M horizon", "water_content": 0.645}, {"collection_date": "2019-06-24", "elev": 27.2, "id": "nmdc:bsm-11-7wextd46", "latitude": 32.523355, "location": "USA: Alabama, Dead Lake", "longitude": -87.814626, "ph": 7.07, "soil_horizon": "M horizon", "water_content": 0.198}, {"collection_date": "2016-08-24", "elev": 29.4, "id": "nmdc:bsm-11-84qt1112", "latitude": 32.538802, "location": "USA: Alabama, Dead Lake", "longitude": -87.804522, "ph": 5.98, "soil_horizon": "M horizon", "water_content": 0.26}, {"collection_date": "2016-08-25", "elev": 24.0, "id": "nmdc:bsm-11-88zk9062", "latitude": 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{"collection_date": "2016-08-24", "elev": 25.1, "id": "nmdc:bsm-11-bsf1xb67", "latitude": 32.534942, "location": "USA: Alabama, Dead Lake", "longitude": -87.815024, "ph": 6.22, "soil_horizon": "M horizon", "water_content": 0.233}, {"collection_date": "2016-08-24", "elev": 23.6, "id": "nmdc:bsm-11-c24ezd14", "latitude": 32.540702, "location": "USA: Alabama, Dead Lake", "longitude": -87.80774, "ph": 5.49, "soil_horizon": "M horizon", "water_content": 0.349}, {"collection_date": "2016-08-24", "elev": 27.1, "id": "nmdc:bsm-11-cb5gdy95", "latitude": 32.539627, "location": "USA: Alabama, Dead Lake", "longitude": -87.801968, "ph": 6.33, "soil_horizon": "M horizon", "water_content": 0.407}, {"collection_date": "2019-06-26", "elev": 25.1, "id": "nmdc:bsm-11-cdpeb419", "latitude": 32.534942, "location": "USA: Alabama, Dead Lake", "longitude": -87.815024, "ph": 6.75, "soil_horizon": "M horizon", "water_content": 0.285}, {"collection_date": "2016-08-24", "elev": 23.6, "id": "nmdc:bsm-11-d0n20z20", 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"nmdc:bsm-11-5dnenv58", "latitude": 40.212498, "location": "USA: Utah, Onaqui", "longitude": -112.467435, "ph": 8.68, "soil_horizon": "M horizon", "water_content": 0.066}, {"collection_date": "2020-07-12", "elev": 1713.7, "id": "nmdc:bsm-11-5e6fsg75", "latitude": 40.185938, "location": "USA: Utah, Onaqui", "longitude": -112.47248, "ph": 8.99, "soil_horizon": "M horizon", "water_content": 0.053}, {"collection_date": "2017-06-27", "elev": 1903.7, "id": "nmdc:bsm-11-5evy1p95", "latitude": 40.201043, "location": "USA: Utah, Onaqui", "longitude": -112.497129, "ph": 7.55, "soil_horizon": "M horizon", "water_content": 0.079}, {"collection_date": "2017-06-25", "elev": 1713.7, "id": "nmdc:bsm-11-5pkzam51", "latitude": 40.185938, "location": "USA: Utah, Onaqui", "longitude": -112.47248, "ph": 8.35, "soil_horizon": "M horizon", "water_content": 0.041}, {"collection_date": "2016-07-27", "elev": 1655.1, "id": "nmdc:bsm-11-5rsxy840", "latitude": 40.175366, "location": "USA: Utah, Onaqui", 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"id": "nmdc:bsm-11-dsjpzf30", "latitude": 40.174021, "location": "USA: Utah, Onaqui", "longitude": -112.45284, "ph": 8.88, "soil_horizon": "M horizon", "water_content": 0.054}, {"collection_date": "2021-05-25", "elev": 1713.7, "id": "nmdc:bsm-11-dsnawg93", "latitude": 40.185938, "location": "USA: Utah, Onaqui", "longitude": -112.47248, "ph": 8.91, "soil_horizon": "M horizon", "water_content": 0.082}, {"collection_date": "2018-05-30", "elev": 1655.1, "id": "nmdc:bsm-11-dspcmg09", "latitude": 40.175366, "location": "USA: Utah, Onaqui", "longitude": -112.453933, "ph": 8.25, "soil_horizon": "M horizon", "water_content": 0.086}, {"collection_date": "2021-05-25", "elev": 1713.7, "id": "nmdc:bsm-11-dxq3jt59", "latitude": 40.185938, "location": "USA: Utah, Onaqui", "longitude": -112.47248, "ph": 9.02, "soil_horizon": "M horizon", "water_content": 0.097}, {"collection_date": "2016-07-28", "elev": 2054.5, "id": "nmdc:bsm-11-e52pet64", "latitude": 40.184944, "location": "USA: Utah, Onaqui", 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