From ac97511d10e43c3c54cbab6f2f302f44f0fcdaef Mon Sep 17 00:00:00 2001
From: "Mark A. Miller" <MAM@lbl.gov>
Date: Fri, 16 Feb 2024 12:32:07 -0500
Subject: [PATCH] problematic_triads.tsv in data-vs-ontology-all

---
 data-vs-ontology-reports.Makefile                    |  3 ++-
 .../problematic_triad_summary.yaml                   | 12 ++++++------
 data-vs-ontology-reports/report-id-ranges.tsv        |  2 +-
 3 files changed, 9 insertions(+), 8 deletions(-)

diff --git a/data-vs-ontology-reports.Makefile b/data-vs-ontology-reports.Makefile
index 4496de8..f66c324 100644
--- a/data-vs-ontology-reports.Makefile
+++ b/data-vs-ontology-reports.Makefile
@@ -11,7 +11,8 @@ data-vs-ontology-all: data-vs-ontology-clean \
 	data-vs-ontology-reports/report-id-ranges.tsv \
 	data-vs-ontology-reports/envo-id-ranges-report.tsv \
 	data-vs-ontology-reports/fma-usage-report.tsv \
-	data-vs-ontology-reports/nmdco-envo-classes-with-id-owner.tsv
+	data-vs-ontology-reports/nmdco-envo-classes-with-id-owner.tsv \
+	data-vs-ontology-reports/problematic_triads.tsv
 
 data-vs-ontology-clean:
 	rm -rf data-vs-ontology-reports/*
diff --git a/data-vs-ontology-reports/problematic_triad_summary.yaml b/data-vs-ontology-reports/problematic_triad_summary.yaml
index 38b7625..a15e7cb 100644
--- a/data-vs-ontology-reports/problematic_triad_summary.yaml
+++ b/data-vs-ontology-reports/problematic_triad_summary.yaml
@@ -1,16 +1,16 @@
 problematic_env_local_scale_term_ids:
 - label: animal-associated environment
   term: ENVO:01001002
-- label: meadow ecosystem
-  term: ENVO:00000108
 - label: agriculture
   term: ENVO:01001442
+- label: meadow ecosystem
+  term: ENVO:00000108
 problematic_env_medium_rm_ids:
-- label: plant-associated environment
-  term: ENVO:01001001
 - label: null
   term: FMA:14541
-- label: portion of plant tissue
-  term: PO:0009007
+- label: plant-associated environment
+  term: ENVO:01001001
 - label: leaf
   term: PO:0025034
+- label: portion of plant tissue
+  term: PO:0009007
diff --git a/data-vs-ontology-reports/report-id-ranges.tsv b/data-vs-ontology-reports/report-id-ranges.tsv
index 97c91a5..2b9102a 100644
--- a/data-vs-ontology-reports/report-id-ranges.tsv
+++ b/data-vs-ontology-reports/report-id-ranges.tsv
@@ -21,7 +21,7 @@
 <http://purl.obolibrary.org/obo/ro/idrange/29>	"Mark Andrew Miller"	3605000	3609999
 <http://purl.obolibrary.org/obo/ro/idrange/22>	"Jimena Linares"	6100001	6105000
 <http://purl.obolibrary.org/obo/ro/idrange/24>	"Isabella Maria Wilkie"	6105101	6105200
-<http://purl.obolibrary.org/obo/ro/idrange/5>	"ENVO-P, E-A-L"	9000000	9099999
 <http://purl.obolibrary.org/obo/ro/idrange/3>	"Chris Mungall"	2000000	2999999
+<http://purl.obolibrary.org/obo/ro/idrange/5>	"ENVO-P, E-A-L"	9000000	9099999
 <http://purl.obolibrary.org/obo/ro/idrange/15>	"Ruth Duerr"	3400001	3500000
 <http://purl.obolibrary.org/obo/ro/idrange/17>	"Anton Van de Putte"	3501001	3501100