From deb96f83f3df2deec7080232509c4cf6b8535a04 Mon Sep 17 00:00:00 2001
From: Kaitlyn Jiayi Li <kli@lanl.gov>
Date: Mon, 12 Aug 2024 14:48:34 -0700
Subject: [PATCH] added anqrpht to interleave

---
 interleave_rqcfilter.wdl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/interleave_rqcfilter.wdl b/interleave_rqcfilter.wdl
index e1f8ef7..70d2af2 100644
--- a/interleave_rqcfilter.wdl
+++ b/interleave_rqcfilter.wdl
@@ -190,7 +190,7 @@ task rqcfilter{
             File stat = filename_stat
             File stat2 = filename_stat2
             File info_file = filename_reproduce
-            File filtered = glob("filtered/*fastq.gz")[0]
+            File filtered = glob("filtered/*.anqrpht.fastq.gz")[0]
             File json_out = filename_stat_json
      }
      runtime {