From b8ca5b4be062d1b8b89f0976eac2fa027e9c4d9e Mon Sep 17 00:00:00 2001 From: Katherine Heal Date: Tue, 1 Oct 2024 14:37:25 -0700 Subject: [PATCH] Add lipid workflow to wdl checker --- .github/workflows/wdl_checker.yml | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/.github/workflows/wdl_checker.yml b/.github/workflows/wdl_checker.yml index 70d9ddd..68f877e 100644 --- a/.github/workflows/wdl_checker.yml +++ b/.github/workflows/wdl_checker.yml @@ -22,7 +22,11 @@ jobs: python -m pip install --upgrade pip pip install miniwdl - - name: Run MiniWDL + - name: Run GCMS MiniWDL run: | # Add the commands to run your MiniWDL workflow - miniwdl run wdl/metaMS_gcms.wdl -i wdl/metams_input_gcms.json --verbose --no-cache --copy-input-files \ No newline at end of file + miniwdl run wdl/metaMS_gcms.wdl -i wdl/metams_input_gcms.json --verbose --no-cache --copy-input-files + + - name: Run LCMS Lipid MiniWDL + run: | + miniwdl run wdl/metaMS_lcms_lipid.wdl configuration/lipidomics_metams.toml \ No newline at end of file