diff --git a/.github/workflows/wdl_checker.yml b/.github/workflows/wdl_checker.yml
index 70d9ddd..68f877e 100644
--- a/.github/workflows/wdl_checker.yml
+++ b/.github/workflows/wdl_checker.yml
@@ -22,7 +22,11 @@ jobs:
         python -m pip install --upgrade pip
         pip install miniwdl
 
-    - name: Run MiniWDL
+    - name: Run GCMS MiniWDL
       run: |
         # Add the commands to run your MiniWDL workflow
-        miniwdl run wdl/metaMS_gcms.wdl -i wdl/metams_input_gcms.json --verbose --no-cache --copy-input-files
\ No newline at end of file
+        miniwdl run wdl/metaMS_gcms.wdl -i wdl/metams_input_gcms.json --verbose --no-cache --copy-input-files
+    
+    - name: Run LCMS Lipid MiniWDL
+      run: |
+        miniwdl run wdl/metaMS_lcms_lipid.wdl configuration/lipidomics_metams.toml
\ No newline at end of file