diff --git a/docs/README_LCMS_LIPID.md b/docs/README_LCMS_LIPID.md index 50c080e..9814c61 100644 --- a/docs/README_LCMS_LIPID.md +++ b/docs/README_LCMS_LIPID.md @@ -54,11 +54,10 @@ with the required workflow dependencies.* ### Database -- PNNL Metabolomics LC-MS *in silico* Spectral Database - () +- PNNL Metabref Database () -The in-silico lipid spectra in the database are generated from the -LipidBlast database (v68), found at +The in-silico lipid spectra in PNNL\'s Metaref database are generated +from the LipidBlast database (v68), found at . Note that there is no retention time in the PNNL version of the database and the workflow does not use retention time scoring. diff --git a/docs/index_lipid.html b/docs/index_lipid.html index 8541948..952bc1d 100644 --- a/docs/index_lipid.html +++ b/docs/index_lipid.html @@ -44,11 +44,11 @@

Software Requirements

docker with the required workflow dependencies.

Database

-

The in-silico lipid spectra in the database are generated from the -LipidBlast database (v68), found at The in-silico lipid spectra in PNNL's Metaref database are generated +from the LipidBlast database (v68), found at https://systemsomicslab.github.io/compms/msdial/main.html. Note that there is no retention time in the PNNL version of the database and the workflow does not use retention time scoring.

diff --git a/docs/index_lipid.rst b/docs/index_lipid.rst index 22e97a8..81ae927 100644 --- a/docs/index_lipid.rst +++ b/docs/index_lipid.rst @@ -56,10 +56,10 @@ Software Requirements Database ~~~~~~~~ -- PNNL Metabolomics LC-MS *in silico* Spectral Database +- PNNL Metabref Database (https://metabref.emsl.pnnl.gov/) -The in-silico lipid spectra in the database are generated from the LipidBlast database (v68), found at https://systemsomicslab.github.io/compms/msdial/main.html. +The in-silico lipid spectra in PNNL's Metaref database are generated from the LipidBlast database (v68), found at https://systemsomicslab.github.io/compms/msdial/main.html. Note that there is no retention time in the PNNL version of the database and the workflow does not use retention time scoring. Sample datasets