From 9ebcf4a2da9c2d58156f809877d16091ab6f6e8c Mon Sep 17 00:00:00 2001 From: mflynn Date: Tue, 18 Jun 2024 11:13:47 -0600 Subject: [PATCH] updated gottcha2 path to use the correct database version --- ReadbasedAnalysis.wdl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ReadbasedAnalysis.wdl b/ReadbasedAnalysis.wdl index b4950a3..290d3ed 100644 --- a/ReadbasedAnalysis.wdl +++ b/ReadbasedAnalysis.wdl @@ -4,7 +4,7 @@ workflow ReadbasedAnalysis { Boolean enabled_tools_gottcha2 = true Boolean enabled_tools_kraken2 = true Boolean enabled_tools_centrifuge = true - String db_gottcha2 = "/refdata/gottcha2/RefSeq-r90/gottcha_db.BAVFPt.species.fna" + String db_gottcha2 = "/refdata/gottcha2/RefSeq-r223/gottcha_db.BAVFPt.species.fna" String db_kraken2 = "/refdata/kraken2/" String db_centrifuge = "/refdata/centrifuge/p_compressed" Int cpu = 8