From 87abacb2c6e039035eea3c495f32552ebc9d92a9 Mon Sep 17 00:00:00 2001 From: Muluh <127390183+Daenarys8@users.noreply.github.com> Date: Tue, 6 Aug 2024 17:57:55 +0100 Subject: [PATCH] cite MGnifyR with notebook references (#594) Signed-off-by: Daena Rys --- inst/pages/miaverse.qmd | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/inst/pages/miaverse.qmd b/inst/pages/miaverse.qmd index 343d94e6..49ca6129 100644 --- a/inst/pages/miaverse.qmd +++ b/inst/pages/miaverse.qmd @@ -121,9 +121,11 @@ The following DA methods support `(Tree)SummarizedExperiment`. - [ALDEx2](https://www.bioconductor.org/packages/release/bioc/html/ALDEx2.html) for differential abundance analysis ### Other relevant packages - -- [LinDA](https://github.com/zhouhj1994/LinDA) -- [vegan](https://vegandevs.github.io/vegan/) +- [MGnifyR](https://github.com/EBI-Metagenomics/MGnifyR) for accessing and processing MGnify data in R + - [MGnify Notebooks](https://docs.mgnify.org/src/notebooks_list.html) + - [EMBL-EBI MGnify user guides and resources](https://github.com/EBI-Metagenomics/notebooks) +- [LinDA](https://github.com/zhouhj1994/LinDA) for differential abundance analysis +- [vegan](https://vegandevs.github.io/vegan/) for community ecologists - [philr](http://bioconductor.org/packages/devel/bioc/html/philr.html) (@Silverman2017) phylogeny-aware phILR transformation - [MicrobiotaProcess](https://bioconductor.org/packages/release/bioc/html/MicrobiotaProcess.html) for the "tidy" analysis of microbiome and other ecological data - [Tools for Microbiome Analysis](https://microsud.github.io/Tools-Microbiome-Analysis/)