From 8b21fcbee589db1c1204ba51fe40fd004fdb57c5 Mon Sep 17 00:00:00 2001
From: Wei Ouyang <oeway007@gmail.com>
Date: Tue, 15 Sep 2020 22:58:14 +0200
Subject: [PATCH 1/3] Add Dockerfile

---
 Dockerfile | 48 ++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 48 insertions(+)
 create mode 100644 Dockerfile

diff --git a/Dockerfile b/Dockerfile
new file mode 100644
index 0000000..33d54d8
--- /dev/null
+++ b/Dockerfile
@@ -0,0 +1,48 @@
+FROM ubuntu:18.04
+
+# System packages
+RUN apt-get update && apt-get install -y \
+        bzip2 \
+		bc \
+		build-essential \
+		cmake \
+		curl \
+		g++ \
+		gfortran \
+        libboost-dev \
+        libboost-thread-dev \
+        libtool \
+        autoconf \
+        automake \
+		git \
+		pkg-config \
+		software-properties-common \
+		unzip \
+		wget \
+		&& \
+	apt-get clean && \
+	apt-get autoremove && \
+	rm -rf /var/lib/apt/lists/*
+RUN addgroup --gid 1001 python && \
+    useradd --uid 1001 --gid 1001 python
+
+RUN git clone https://github.com/micro-manager/micro-manager.git
+RUN cd micro-manager && \
+    ./autogen.sh && \
+    ./configure --without-java && \
+    make && \
+    # will be installed to /usr/local/lib/micro-manager/
+    make install
+ENV MMCORE_PATH=/usr/local/lib/micro-manager/
+ENV MMCONFIG_DEMO_PATH=/micro-manager/bindist/any-platform/MMConfig_demo.cfg
+
+# Install miniconda to /miniconda
+RUN curl -LO https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
+RUN bash Miniconda3-latest-Linux-x86_64.sh -p /miniconda -b
+RUN rm Miniconda3-latest-Linux-x86_64.sh
+ENV PATH=/miniconda/bin:${PATH}
+
+RUN conda update -y conda && \
+    conda install -y python=3.7.6 numpy && \
+	pip install --upgrade pip && \
+  pip install pymmcore

From b849432814b5380a93ca7dc67d34a5506eb68954 Mon Sep 17 00:00:00 2001
From: "Mark A. Tsuchida" <matsuchida@wisc.edu>
Date: Thu, 17 Sep 2020 13:42:59 -0500
Subject: [PATCH 2/3] Fix indents

---
 Dockerfile | 34 +++++++++++++++++-----------------
 1 file changed, 17 insertions(+), 17 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index 33d54d8..8c217ff 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -3,26 +3,26 @@ FROM ubuntu:18.04
 # System packages
 RUN apt-get update && apt-get install -y \
         bzip2 \
-		bc \
-		build-essential \
-		cmake \
-		curl \
-		g++ \
-		gfortran \
+        bc \
+        build-essential \
+        cmake \
+        curl \
+        g++ \
+        gfortran \
         libboost-dev \
         libboost-thread-dev \
         libtool \
         autoconf \
         automake \
-		git \
-		pkg-config \
-		software-properties-common \
-		unzip \
-		wget \
-		&& \
-	apt-get clean && \
-	apt-get autoremove && \
-	rm -rf /var/lib/apt/lists/*
+        git \
+        pkg-config \
+        software-properties-common \
+        unzip \
+        wget \
+        && \
+    apt-get clean && \
+    apt-get autoremove && \
+    rm -rf /var/lib/apt/lists/*
 RUN addgroup --gid 1001 python && \
     useradd --uid 1001 --gid 1001 python
 
@@ -44,5 +44,5 @@ ENV PATH=/miniconda/bin:${PATH}
 
 RUN conda update -y conda && \
     conda install -y python=3.7.6 numpy && \
-	pip install --upgrade pip && \
-  pip install pymmcore
+    pip install --upgrade pip && \
+    pip install pymmcore

From f25aad9a117932ea2df1ec111e03100779b3d4a3 Mon Sep 17 00:00:00 2001
From: "Mark A. Tsuchida" <matsuchida@wisc.edu>
Date: Thu, 17 Sep 2020 13:46:29 -0500
Subject: [PATCH 3/3] Add comment

---
 Dockerfile | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/Dockerfile b/Dockerfile
index 8c217ff..9776ac5 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,3 +1,6 @@
+# This dockerfile creates a minimal pymmcore image for demonstration purposes
+# (for example, DemoCamera should work).
+
 FROM ubuntu:18.04
 
 # System packages