File `mathdesign.sty' not found

[yafengwen]

Hi Kyle @kylebaron,

I'm trying to use yspec on my working computer (Windows system). When rendering the a spec file to a pdf file, it failed due to mathdesign.sty is not found. I tried several ways to install mathdesign.sty without success. I believe mathdesign can be downloaded via: https://ctan.org/tex-archive/fonts/mathdesign/?lang=en, but I'm not able to direct tinytex to use mathdesign.

This is more a LaTex issue rather than a yspec issue, but I'd appreciate if you can provide some directions.

An example provided below.

Thank you for your time!

Best,
Ya-Feng (Jay)

library(yspec)

specfile <- ys_help$file()
spec <- ys_load(specfile)
ys_document(
  spec, 
  type = "regulatory",
  stem = "fda_document", 
  build_dir = definetemplate(),
)
#> Writing project file to:
#>  C:/Users/jwen3/AppData/Local/Temp/1/RtmpagnotG/file412863822a69.yml
#> processing file: fda_document.Rmd
#> output file: fda_document.knit.md
#> "C:/Program Files/RStudio/resources/app/bin/quarto/bin/tools/pandoc" +RTS -K512m -RTS fda_document.knit.md --to latex --from markdown+autolink_bare_uris+tex_math_single_backslash --output fda_document.tex --lua-filter "C:\M_S\Trodelvy_Neutropenia\renv\library\R-4.2\x86_64-w64-mingw32\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\M_S\Trodelvy_Neutropenia\renv\library\R-4.2\x86_64-w64-mingw32\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --number-sections --highlight-style tango --pdf-engine pdflatex --include-in-header header.tex --variable graphics --include-in-header "C:\Users\jwen3\AppData\Local\Temp\1\RtmpagnotG\rmarkdown-str412813272bb6.html"
#> ! LaTeX Error: File `mathdesign.sty' not found.
#> 
#> ! Emergency stop.
#> <read *>
#> Error: LaTeX failed to compile fda_document.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See fda_document.log for more info.

# available package on the system
tinytex::tlmgr(c('info', '--list', '--only-installed', '--data', 'name'))
#> tlmgr info --list --only-installed --data name
amscls
amsfonts
amsmath
atbegshi
atveryend
auxhook
babel
bibtex
bibtex.win32
bigintcalc
bitset
booktabs
cm
ctablestack
dehyph
dvipdfmx
dvipdfmx.win32
dvips
dvips.win32
ec
epstopdf-pkg
etex
etexcmds
etoolbox
euenc
everyshi
fancyvrb
filehook
firstaid
float
fontspec
framed
geometry
gettitlestring
glyphlist
graphics
graphics-cfg
graphics-def
helvetic
hycolor
hyperref
hyph-utf8
hyphen-base
iftex
inconsolata
infwarerr
intcalc
knuth-lib
kpathsea
kpathsea.win32
kvdefinekeys
kvoptions
kvsetkeys
l3backend
l3kernel
l3packages
latex
latex-amsmath-dev
latex-bin
latex-bin.win32
latex-fonts
latex-tools-dev
latexconfig
latexmk
latexmk.win32
letltxmacro
lm
lm-math
ltxcmds
lua-alt-getopt
lua-uni-algos
luahbtex
luahbtex.win32
lualatex-math
lualibs
luaotfload
luaotfload.win32
luatex
luatex.win32
luatexbase
mdwtools
metafont
metafont.win32
mfware
mfware.win32
modes
natbib
pdfescape
pdftex
pdftex.win32
pdftexcmds
plain
psnfss
refcount
rerunfilecheck
scheme-infraonly
selnolig
stringenc
symbol
tex
tex-ini-files
tex.win32
texlive-scripts
texlive-scripts.win32
texlive.infra
texlive.infra.win32
times
tipa
tlgs.win32
tlperl.win32
tools
unicode-data
unicode-math
uniquecounter
url
xcolor
xetex
xetex.win32
xetexconfig
xkeyval
xunicode
zapfding

# not able to install `mathdesign`
tinytex::tlmgr_install("mathdesign")
#> tlmgr install mathdesign
#> tlmgr update --self
#> tlmgr install mathdesign
tlmgr install mathdesign

C:\Users\jwen3\AppData\Roaming\TinyTeX\texmf-dist\scripts\texlive\tlmgr.pl: TLPDB::from_file could not initialize from: https://mirror.ctan.org/systems/texlive/tlnet/tlpkg/texlive.tlpdb
C:\Users\jwen3\AppData\Roaming\TinyTeX\texmf-dist\scripts\texlive\tlmgr.pl: Maybe the repository setting should be changed.
C:\Users\jwen3\AppData\Roaming\TinyTeX\texmf-dist\scripts\texlive\tlmgr.pl: More info: https://tug.org/texlive/acquire.html
tlmgr update --self
tlmgr install mathdesign

C:\Users\jwen3\AppData\Roaming\TinyTeX\texmf-dist\scripts\texlive\tlmgr.pl: TLPDB::from_file could not initialize from: https://mirror.ctan.org/systems/texlive/tlnet/tlpkg/texlive.tlpdb
C:\Users\jwen3\AppData\Roaming\TinyTeX\texmf-dist\scripts\texlive\tlmgr.pl: Maybe the repository setting should be changed.
C:\Users\jwen3\AppData\Roaming\TinyTeX\texmf-dist\scripts\texlive\tlmgr.pl: More info: https://tug.org/texlive/acquire.html

sessionInfo()
#> R version 4.2.0 (2022-04-22 ucrt)
#> Platform: x86_64-w64-mingw32/x64 (64-bit)
#> Running under: Windows 10 x64 (build 19042)
#> 
#> Matrix products: default
#> 
#> locale:
#> [1] LC_COLLATE=English_United States.utf8 
#> [2] LC_CTYPE=English_United States.utf8   
#> [3] LC_MONETARY=English_United States.utf8
#> [4] LC_NUMERIC=C                          
#> [5] LC_TIME=English_United States.utf8    
#> 
#> attached base packages:
#> [1] stats     graphics  grDevices utils     datasets  methods   base     
#> 
#> other attached packages:
#> [1] yspec_0.5.3.9000
#> 
#> loaded via a namespace (and not attached):
#>  [1] rstudioapi_0.14  knitr_1.41       magrittr_2.0.3   tidyselect_1.2.0
#>  [5] xtable_1.8-4     R6_2.5.1         rlang_1.0.6      fastmap_1.1.0   
#>  [9] fansi_1.0.3      stringr_1.5.0    highr_0.9        dplyr_1.0.10    
#> [13] tools_4.2.0      xfun_0.35        tinytex_0.43     utf8_1.2.2      
#> [17] DBI_1.1.2        cli_3.4.1        withr_2.5.0      htmltools_0.5.4 
#> [21] yaml_2.3.6       digest_0.6.31    assertthat_0.2.1 tibble_3.1.8    
#> [25] lifecycle_1.0.3  crayon_1.5.2     purrr_0.3.5      vctrs_0.5.1     
#> [29] fs_1.5.2         glue_1.6.2       evaluate_0.19    rmarkdown_2.19  
#> [33] reprex_2.0.1     stringi_1.7.8    compiler_4.2.0   pillar_1.8.1    
#> [37] generics_0.1.3   pkgconfig_2.0.3