From c06ebd7b9abe676374a0cb0045a99d99f5805981 Mon Sep 17 00:00:00 2001 From: farchaab Date: Fri, 26 Apr 2024 18:48:34 +0200 Subject: [PATCH] changed split directory path --- mess/workflow/rules/processing/fastas.smk | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/mess/workflow/rules/processing/fastas.smk b/mess/workflow/rules/processing/fastas.smk index 2e67f2b..3fd244a 100644 --- a/mess/workflow/rules/processing/fastas.smk +++ b/mess/workflow/rules/processing/fastas.smk @@ -42,10 +42,10 @@ if FASTA and not ASM_SUMMARY: checkpoint split_contigs: input: fa=list_fastas, - cov=os.path.join(dir.out.processing, "cov.tsv"), + cov=os.path.join(dir.out.base, "cov.tsv"), output: tsv=os.path.join(dir.out.processing, "split.tsv"), - dir=temp(directory(os.path.join(dir.out.base, "split"))), + dir=directory(os.path.join(dir.out.processing, "split")), resources: mem_mb=config.resources.sml.mem, mem=str(config.resources.sml.mem) + "MB",