From 58791282fc489dda0eeaab95bd2152dcb7ea23c9 Mon Sep 17 00:00:00 2001
From: farchaab <farid.chaabane@chuv.ch>
Date: Fri, 30 Aug 2024 12:09:11 +0200
Subject: [PATCH] added wildcards constraints

---
 mess/workflow/rules/preflight/functions.smk | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/mess/workflow/rules/preflight/functions.smk b/mess/workflow/rules/preflight/functions.smk
index b2284aa..00ccdcd 100644
--- a/mess/workflow/rules/preflight/functions.smk
+++ b/mess/workflow/rules/preflight/functions.smk
@@ -7,6 +7,11 @@ from Bio import SeqIO
 import random
 
 
+wildcard_constraints:
+    sample="[^/]+",
+    contig="[^/]+",
+
+
 def list_reads(wildcards):
     if PAIRED:
         reads = expand(