From 3dc46359d67b0b4b0fcce81c474255c0a751022e Mon Sep 17 00:00:00 2001
From: farchaab <116543129+farchaab@users.noreply.github.com>
Date: Sat, 7 Sep 2024 11:52:13 +0200
Subject: [PATCH] Update README.md

---
 README.md | 11 ++++++-----
 1 file changed, 6 insertions(+), 5 deletions(-)

diff --git a/README.md b/README.md
index e45cfd1..4850e64 100644
--- a/README.md
+++ b/README.md
@@ -34,6 +34,7 @@ dlchoice -->|yes| assembly_finder
 dlchoice -->|no| fasta 
 assembly_finder --> fasta
 end
+style genome_download color:#15161a
 
 input --> distchoice
 subgraph community_design["`**community design**`"]
@@ -50,6 +51,8 @@ bases --> depth
 abundances["abundances 
 (sequence, taxonomic)"] --> depth 
 end
+style community_design color:#15161a
+
 fasta --> simulator
 depth --> simulator
 
@@ -135,9 +138,7 @@ Outputs described in more details [here](https://metagenlab.github.io/MeSS/guide
 
 #### :bar_chart: Resources usage
 
-> On average, using `samples.tsv` (see [Usage](https://github.com/metagenlab/mess#page_facing_up-usage)), MeSS runs in under 2min, while using around 1.8GB of physical RAM
-
-Average resources usage measured 3 times with one CPU (within a [nextflow](https://github.com/nextflow-io/nextflow) process):
+On average, using `samples.tsv` (see [table](#arrow_right-input)), MeSS runs in under 2min, while using around 1.8GB of physical RAM
 
 | task_id | hash      | native_id | name     | status    | exit | submit                  | duration | realtime | %cpu   | peak_rss | peak_vmem | rchar  | wchar  |
 | ------- | --------- | --------- | -------- | --------- | ---- | ----------------------- | -------- | -------- | ------ | -------- | --------- | ------ | ------ |
@@ -145,9 +146,9 @@ Average resources usage measured 3 times with one CPU (within a [nextflow](https
 | 1       | ff/0d03b1 | 73355     | MESS (1) | COMPLETED | 0    | 2024-09-04 12:55:12.903 | 1m 52s   | 1m 52s   | 112.6% | 1.7 GB   | 8.8 GB    | 3.5 GB | 2.4 GB |
 | 1       | 07/d352bf | 83576     | MESS (1) | COMPLETED | 0    | 2024-09-04 12:57:30.600 | 1m 50s   | 1m 50s   | 113.2% | 1.7 GB   | 8.9 GB    | 3.5 GB | 2.4 GB |
 
-
-
 > [!NOTE]
+> Average resources usage measured 3 times with one CPU (within a [nextflow](https://github.com/nextflow-io/nextflow) process)
+> 
 > Resources usage was measured exluding dependencies deployement time (conda env creation or container pulling)
 
 More details on resource usage in the [documentation](https://metagenlab.github.io/MeSS/benchmarks/resource-usage/)