diff --git a/mess/workflow/rules/processing/coverages.smk b/mess/workflow/rules/processing/coverages.smk index bad9529..31296a8 100644 --- a/mess/workflow/rules/processing/coverages.smk +++ b/mess/workflow/rules/processing/coverages.smk @@ -11,18 +11,16 @@ rule replicates_table: mem_mb=config.resources.sml.mem, mem=str(config.resources.sml.mem) + "MB", time=config.resources.sml.time, - log: - os.path.join(dir.out.logs, "tables", "replicates.tsv"), script: os.path.join(dir.scripts, "replicates.py") -checkpoint calculate_coverage: +checkpoint calculate_genome_coverages: input: df=os.path.join(dir.out.base, "replicates.tsv"), asm=get_asm_summary, output: - os.path.join(dir.out.base, "cov.tsv"), + os.path.join(dir.out.processing, "coverages.tsv"), params: fa=FASTA, dist=DIST,