nextflow.config

manifest {
    name            = 'metagenlab/MeSS-figures'
    author          = """Farid Chaabane, Trestan Pillonel, Claire Bertelli"""
    homePage        = 'https://github.com/metagenlab/MeSS-figures'
    description     = """Supplementary figures and scripts for the MeSS paper"""
    mainScript      = 'main.nf'
    nextflowVersion = '!>=24.04.4'
    version         = '1.0'
    doi             = '10.5281/zenodo.14499940'
}

params {
    ext = "{R1,R2}"
}

apptainer {
    enabled    = true
    autoMounts = true
    cacheDir   = "containers"
}

process {
    withLabel: process_single {
        cpus   = 1
        memory = 1.GB
        time   = 1.h
    }
    withLabel: process_low {
        cpus   = 2
        memory = 12.GB
        time   = 2.h
    }
    withLabel: process_medium {
        cpus   = 6
        memory = 36.GB
        time   = 6.h
    }
    withLabel: process_high {
        cpus   = 16
        memory = 80.GB
        time   = 10.h
    }
    withLabel: process_high_memory {
        memory = 200.GB
    }
}