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dlab

A collection of python code and scripts used by the Meliza Lab.

To install: pip install melizalab-tools

modules

  • dlab.pprox: functions for working with pprox objects, a data format for storing multi-trial point process data (e.g. spike times evoked by stimulus presentation).

console scripts

  • group-kilo-spikes: sort spike times output from kilosort and phy2 into pprox files.

other stuff

  • scripts/extract_waveforms.py: extracts spike waveforms from a raw recording (in ARF format) using spike times stored in a file (pprox format). This script is mostly only used to verify that spike sorting is working properly, because the group-kilo-spikes script has an option to store average waveforms.