An HTTP wrapper for L-Measure, which is a tool for quantifying features of neuronal morphologies, in a containerized web service.
To start the service running in a container, run:
docker run --rm -p 5000:5000 melizalab/lmeasure-svc
If you intend to deploy the container behind an nginx proxy:
docker-compose up docker-compose.yml
Assuming you have httpie installed; use curl instead if you prefer.
To get a list of endpoints:
http GET http://localhost:5000/
To get a list of supported metrics:
http OPTIONS http://localhost:5000/lmeasure/
To compute all the supported measures from file.DAT
http POST http://localhost:5000/lmeasure/ [email protected]
To compute specific measures:
http POST http://localhost:5000/lmeasure/ [email protected] metrics:='["Fractal_Dim"]'
To convert Neurolucida or other file formats to SWC (you don't have to do this before computing measures; it's just for convenience).
http POST http://localhost:5000/convert/ [email protected]
docker build -t melizalab/lmeasure-svc . Replace melizalab with your own docker cloud ID.