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[DOCS] Biological sample contribution #433

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talonchandler opened this issue Aug 30, 2023 · 3 comments · Fixed by #440
Closed
5 tasks done

[DOCS] Biological sample contribution #433

talonchandler opened this issue Aug 30, 2023 · 3 comments · Fixed by #440
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@talonchandler
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talonchandler commented Aug 30, 2023

Our README should lead with biological data that's available via a sample contribution. I've added this to an 0.4.1 release milestone (I'm flexible on its name).

  • decide on a specific sample contribution, possibly zebrafish embryo or full-zebrafish data TBD
  • truncate the dataset to a manageable download size: I think 100 MB is a good target, as long as the size is labelled clearly in the sample contribution menu
  • upload the dataset to zenodo
  • add the sample contribution in recOrder
  • add a figure and/or gif of the data to recOrder's README
@talonchandler talonchandler added this to the 0.4.1 milestone Aug 30, 2023
@talonchandler talonchandler self-assigned this Aug 30, 2023
@talonchandler
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Here's a nomination for a landing-page movie.

sweep-zt3.mp4

The phase reconstructions didn't come out looking very good for this sample (likely driven by strong absorption), so I excluded it.

@mattersoflight let's discuss this next week and we can decide on how we should proceed with this dataset, and what other datasets we might consider.

@talonchandler
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I'm uploading movies to this thread, so that they can be linked from the README.

2023-05-zebrafish.mov
2023-08-zebrafish-embryo.mp4

@talonchandler
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Uploading another movie for inclusion in the README

2023-10-05-recOrder-build-v2.mp4

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