From f954554d95eb23ef719182fe81a629866f394105 Mon Sep 17 00:00:00 2001
From: Ziwen Liu <67518483+ziw-liu@users.noreply.github.com>
Date: Thu, 23 May 2024 14:12:27 -0700
Subject: [PATCH] Add CITATION.cff (#79)

* add CITATION.cff

* fix matplotlib 3.9.0 breakage
---
 CITATION.cff          | 37 +++++++++++++++++++++++++++++++++++++
 viscy/light/engine.py |  2 +-
 2 files changed, 38 insertions(+), 1 deletion(-)
 create mode 100644 CITATION.cff

diff --git a/CITATION.cff b/CITATION.cff
new file mode 100644
index 00000000..8e3c763a
--- /dev/null
+++ b/CITATION.cff
@@ -0,0 +1,37 @@
+# This CITATION.cff file was generated with cffinit.
+# Visit https://bit.ly/cffinit to generate yours today!
+
+cff-version: 1.2.0
+title: VisCy
+message: >-
+  If you use this software, please cite it using the
+  metadata from this file.
+type: software
+authors:
+  - given-names: Ziwen
+    family-names: Liu
+    email: ziwen.liu@czbiohub.org
+    affiliation: Chan Zuckerberg Biohub San Francisco
+    orcid: 'https://orcid.org/0000-0001-7482-1299'
+  - given-names: Eduardo
+    family-names: Hirata-Miyasaki
+    affiliation: Chan Zuckerberg Biohub San Francisco
+    orcid: 'https://orcid.org/0000-0002-1016-2447'
+  - given-names: Christian
+    family-names: Foley
+  - given-names: Soorya
+    family-names: Pradeep
+    affiliation: Chan Zuckerberg Biohub San Francisco
+    orcid: 'https://orcid.org/0000-0002-0926-1480'
+  - given-names: Shalin
+    family-names: Mehta
+    affiliation: Chan Zuckerberg Biohub San Francisco
+    orcid: 'https://orcid.org/0000-0002-2542-3582'
+repository-code: 'https://github.com/mehta-lab/VisCy'
+url: 'https://github.com/mehta-lab/VisCy'
+abstract: computer vision models for single-cell phenotyping
+keywords:
+  - machine-learning
+  - computer-vision
+  - bioimage-analysis
+license: BSD-3-Clause
diff --git a/viscy/light/engine.py b/viscy/light/engine.py
index 3dc92b74..f3886147 100644
--- a/viscy/light/engine.py
+++ b/viscy/light/engine.py
@@ -6,7 +6,7 @@
 import torch
 from imageio import imwrite
 from lightning.pytorch import LightningModule
-from matplotlib.cm import get_cmap
+from matplotlib.pyplot import get_cmap
 from monai.optimizers import WarmupCosineSchedule
 from monai.transforms import DivisiblePad
 from skimage.exposure import rescale_intensity