diff --git a/README.md b/README.md index eb859adb..b6c03134 100644 --- a/README.md +++ b/README.md @@ -75,26 +75,23 @@ publisher = {eLife Sciences Publications, Ltd}, # conda create --prefix /path/to/conda/envs/viscy python=3.10 ``` -2. Clone this repository and install with pip: +2. Install a released version of VisCy from PyPI: ```sh - git clone https://github.com/mehta-lab/VisCy.git - # change to project root directory (parent folder of pyproject.toml) - cd VisCy - pip install . + pip install viscy ``` If evaluating virtually stained images for segmentation tasks, install additional dependencies: ```sh - pip install ".[metrics]" + pip install "viscy[metrics]" ``` Visualizing the model architecture requires `visual` dependencies: ```sh - pip install ".[visual]" + pip install "viscy[visual]" ``` 3. Verify installation by accessing the CLI help message: diff --git a/pyproject.toml b/pyproject.toml index 64d3948d..7f48ea7e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -14,11 +14,11 @@ dependencies = [ "torch>=2.1.2", "timm>=0.9.5", "tensorboard>=2.13.0", - "lightning>=2.0.1", + "lightning>=2.3.0", "monai>=1.3.1", "jsonargparse[signatures]>=4.20.1", "scikit-image", - "matplotlib", + "matplotlib>=3.9.0", ] dynamic = ["version"]