chore: cleanup Make commands

Makefile

@@ -1,21 +1,33 @@
 PROJECT=invert4geom
 STYLE_CHECK_FILES=.
 
+####
+####
+# install commands
+####
+####
+
 create:
 	mamba create --name $(PROJECT) --yes --force polartoolkit python=3.11
 
-create_test_env:
-	mamba create --name test --yes python=3.11
-
 install:
 	pip install -e .[all]
 
 install_test:
-	pip install invert4geom[all]
+	pip install $(PROJECT)[all]
 
 remove:
 	mamba remove --name $(PROJECT) --all
 
+conda_install:
+	mamba create --name $(PROJECT) --yes --force $(PROJECT)
+
+####
+####
+# test commands
+####
+####
+
 test: test_coverage test_numba
 
 test_coverage:
@@ -24,6 +36,12 @@ test_coverage:
 test_numba:
 	NUMBA_DISABLE_JIT=0 pytest -rP -m use_numba
 
+####
+####
+# style commands
+####
+####
+
 format:
 	ruff format $(STYLE_CHECK_FILES)
 
@@ -34,67 +52,36 @@ lint:
 	pre-commit run --all-files
 
 pylint:
-	pylint invert4geom
+	pylint $(PROJECT)
 
 style: format check lint pylint
 
 mypy:
-	mypy src/invert4geom
+	mypy src/$(PROJECT)
+
+####
+####
+# chore commands
+####
+####
 
 release_check:
 	semantic-release --noop version
 
 changelog:
 	semantic-release changelog
 
+
+####
+####
+# doc commands
+####
+####
+
 run_gallery:
 	jupyter nbconvert --ExecutePreprocessor.allow_errors=True --execute --inplace docs/gallery/*.ipynb
 
 run_user_guide:
 	jupyter nbconvert --ExecutePreprocessor.allow_errors=True --execute --inplace docs/user_guide/*.ipynb
 
 run_all_doc_files: run_gallery run_user_guide
-
-# install with conda
-conda_install:
-	mamba create --name invert4geom --yes --force invert4geom
-
-# create binder yml
-binder_env:
-	mamba env export --name invert4geom --no-builds > binder/environment.yml
-	# delete last line
-	sed -i '$$d' binder/environment.yml
-	# add pip and optional packages
-	sed -i '$$a\  - pip\n  - pip:' binder/environment.yml
-	sed -i '$$a\    - optuna>=3.1.0' binder/environment.yml
-	sed -i '$$a\    - botorch>=0.4.0' binder/environment.yml
-	sed -i '$$a\    - joblib' binder/environment.yml
-	sed -i '$$a\    - psutil' binder/environment.yml
-	sed -i '$$a\    - tqdm_joblib' binder/environment.yml
-	sed -i '$$a\    - pyvista' binder/environment.yml
-	sed -i '$$a\    - trame' binder/environment.yml
-	sed -i '$$a\    - ipywidgets' binder/environment.yml
-	sed -i '$$a\    - matplotlib' binder/environment.yml
-	sed -i '$$a\    - seaborn' binder/environment.yml
-	sed -i '$$a\    - ipython' binder/environment.yml
-	# sed -i '$$a\    - ' binder/environment.yml
-
-# create ReadTheDocs yml
-RTD_env:
-	mamba remove --name RTD_env --all --yes
-	mamba create --name RTD_env --yes --force python==3.11 polartoolkit
-	mamba env export --name RTD_env --no-builds --from-history > env/RTD_env.yml
-	# delete last line
-	sed -i '$$d' env/RTD_env.yml
-	# add pip and install local package
-	sed -i '$$a\  - pip\n  - pip:\n    - ../.[docs]' env/RTD_env.yml
-
-# create testing yml
-testing_env:
-	mamba remove --name testing_env --all --yes
-	mamba create --name testing_env --yes --force polartoolkit
-	mamba env export --name testing_env --no-builds --from-history > env/testing_env.yml
-	# delete last line
-	sed -i '$$d' env/testing_env.yml
-	# add pip and install local package
-	sed -i '$$a\  - pip\n  - pip:\n    - ../.[test]' env/testing_env.yml