diff --git a/defense_finder_cli/main.py b/defense_finder_cli/main.py index 0c03abd..bb7961c 100644 --- a/defense_finder_cli/main.py +++ b/defense_finder_cli/main.py @@ -72,7 +72,7 @@ def update(models_dir=None, force_reinstall: bool = False): def run(file: str, outdir: str, dbtype: str, workers: int, coverage: float, preserve_raw: bool, no_cut_ga: bool, models_dir: str = None, loglevel : str = "INFO", - models_dir: str = None): + index_dir: str = None): """ Search for all known anti-phage defense systems in the target fasta file. """