forked from NBISweden/IgDiscover-legacy
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathenvironment.yml
109 lines (109 loc) · 2.9 KB
/
environment.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
# abstract dependencies:
# python=3.6 sqt seaborn snakemake cutadapt muscle pear flash igblast vsearch ruamel.yaml nomkl
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- bcftools=1.9=h4da6232_0
- cutadapt=1.17=py36_0
- flash=1.2.11=ha92aebf_2
- htslib=1.7=0
- igblast=1.7.0=pl5.22.0_0
- libdeflate=1.0=h470a237_0
- muscle=3.8.1551=h2d50403_3
- pear=0.9.6=he4cf2ce_4
- pysam=0.14.1=py36hae42fb6_1
- samtools=1.7=1
- snakemake-minimal=5.2.2=py36_1
- sqt=0.8.0=py36h470a237_2
- vsearch=2.8.1=h96824bc_0
- xopen=0.3.2=py_1
- appdirs=1.4.3=py_1
- asn1crypto=0.24.0=py36_2
- bzip2=1.0.6=h470a237_2
- ca-certificates=2018.8.13=ha4d7672_0
- certifi=2018.8.13=py36_0
- cffi=1.11.5=py36h5e8e0c9_1
- chardet=3.0.4=py36_3
- configargparse=0.13.0=py_1
- cryptography=2.3.1=py36hdffb7b8_0
- cryptography-vectors=2.3.1=py36_0
- curl=7.61.0=h93b3f91_1
- cycler=0.10.0=py_1
- dbus=1.13.0=h3a4f0e9_0
- docutils=0.14=py36_0
- expat=2.2.5=hfc679d8_1
- fontconfig=2.13.0=h65d0f4c_5
- freetype=2.9.1=h6debe1e_1
- gettext=0.19.8.1=0
- glib=2.55.0=h464dc38_2
- gst-plugins-base=1.12.5=hde13a9d_0
- gstreamer=1.12.5=h61a6719_0
- icu=58.2=hfc679d8_0
- idna=2.7=py36_2
- jpeg=9c=h470a237_0
- jsonschema=2.6.0=py36_1
- kiwisolver=1.0.1=py36h2d50403_2
- krb5=1.14.6=0
- libffi=3.2.1=hfc679d8_4
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=7.2.0=hdf63c60_3
- libgfortran-ng=7.2.0=hdf63c60_3
- libiconv=1.15=h470a237_2
- libpng=1.6.35=ha92aebf_0
- libssh2=1.8.0=h5b517e9_2
- libstdcxx-ng=7.2.0=hdf63c60_3
- libuuid=2.32.1=h470a237_0
- libxcb=1.13=h470a237_2
- libxml2=2.9.8=h422b904_3
- matplotlib=2.2.3=py36h8e2386c_0
- ncurses=6.1=hfc679d8_1
- openssl=1.0.2o=h470a237_1
- pandas=0.23.4=py36hf8a1672_0
- patsy=0.5.0=py_1
- pcre=8.41=h470a237_2
- perl=5.22.0.1=0
- pigz=2.3.4=0
- pip=18.0=py36_1
- psutil=5.4.7=py36_0
- pthread-stubs=0.4=h470a237_1
- pycparser=2.18=py_1
- pyopenssl=18.0.0=py36_0
- pyparsing=2.2.0=py_1
- pyqt=5.6.0=py36h8210e8a_6
- pysocks=1.6.8=py36_1
- python=3.6.6=h5001a0f_0
- python-dateutil=2.7.3=py_0
- pytz=2018.5=py_0
- pyyaml=3.12=py36_1
- qt=5.6.2=hf70d934_9
- ratelimiter=1.2.0=py36_0
- readline=7.0=haf1bffa_1
- requests=2.19.1=py36_1
- ruamel.yaml=0.15.52=py36_0
- seaborn=0.9.0=py_0
- setuptools=40.0.0=py36_1
- sip=4.18=py36_1
- six=1.11.0=py36_1
- sqlite=3.24.0=h2f33b56_0
- statsmodels=0.9.0=py36_0
- tk=8.6.8=0
- tornado=5.1=py36h470a237_1
- urllib3=1.23=py36_1
- wheel=0.31.1=py36_1
- wrapt=1.10.11=py36_0
- xorg-libxau=1.0.8=h470a237_6
- xorg-libxdmcp=1.1.2=h470a237_7
- xz=5.2.4=h470a237_1
- yaml=0.1.7=h470a237_1
- zlib=1.2.11=h470a237_3
- blas=1.0=openblas
- bz2file=0.98=py36_1
- datrie=0.7.1=py36_0
- libopenblas=0.2.20=h9ac9557_7
- nomkl=3.0=0
- numpy=1.14.2=py36_nomklh2b20989_1
- scipy=1.1.0=py36_nomklh9c1e066_0
- pip:
- snakemake==5.2.2