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Standardize fieldnames across different microbe types #23

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mastrof opened this issue Apr 27, 2023 · 0 comments · Fixed by #25
Closed

Standardize fieldnames across different microbe types #23

mastrof opened this issue Apr 27, 2023 · 0 comments · Fixed by #25
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breaking Breaking change enhancement New feature or request

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@mastrof
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mastrof commented Apr 27, 2023

Fieldnames of distinct microbe types should be standardized as much as possible, despite them having possibly slightly different physical meanings, e.g.:

  • BrownBerg and Brumley have a motor_gain field, while in Celani the equivalent field is just called gain
  • BrownBerg and Brumley have an adaptation_time field, while the Celani equivalent is called memory
  • the state field in Celani is a vector, whereas it is a scalar in BrownBerg, Brumley and Xie; it's maybe more convenient to keep it a scalar and rename the internal markovian variables to something different
@mastrof mastrof added enhancement New feature or request breaking Breaking change labels Apr 27, 2023
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