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--dont_collapse doesn't work on W-lines? #8

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glennhickey opened this issue Nov 4, 2022 · 0 comments
Open

--dont_collapse doesn't work on W-lines? #8

glennhickey opened this issue Nov 4, 2022 · 0 comments

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@glennhickey
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when I run gfaffix on a GFA with W-lines, I get downstream sanity check fails about cycles on reference paths (that I'd input with --dont_collapse). When I run the same file with P-lines this error doesn't happen. This could be somethign I've screwed up, but it really seems like --dont_collapse may not be working on W-line paths?
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