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2019-07-25-clin.txt
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2019-07-25-clin.txt
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DNA.Part.of.PPTC RNA.Part.of.PPTC Model.Part.of.PPTC Consent.to.Share.Data. Have.snp.file snp.array.filename snp.array.sample.ID Have.maf WES.human.bam.filename.dbgap test WES.human.bam.filename.CHOP Human.wes.md5 WES.mouse.bam.filename RNA.human.bam.filename Human.rna.md5 RNA.mouse.bam.filename Have.fpkm.file FPKM.filename PDX.WES.filename PDX.wes.md5 PDX.RNA.filename PDX.rna.md5 Tumor_Sample_Barcode TSB.minus TSB.RNA Model.Type PersonID Model Diagnosis...not.necessarily.accurate. CaseID SampleName TARGET.ID Histology Histology.Detailed Histology.Detailed.Onco Histology.Detailed2 Molecular.Subtype Histology.oncotree Histology.pedcbio Histology.Broad Histology.Priors Histology.Oncoprints Histology.Oncoprints2 Histology.Onco.New PI FilePrefix DNA.ID RNA.ID Matching.Normal.DNA Exome_Seq.Done GEP.Done RNASeq.Done RNASeq_bam.Avail RNASeq_fpkm.Avail WES_bam.Avail Panel Sex Phase Phase2 Phase.Oncoprints Age.months Age.units..will.remove.column.once.all.ages.are.in.months. Age Reported_Ethnicity Inferred_Ethnicity Site.of.Initial.Tumor Site.of.Specimen Histopathology New.Histopathology Stage.of.Disease Risk.Group COG.studies Prior.Therapy TP53.mutation.status Molecular.Subtype..brain. MYCN_status..NBL. ALK.mutation.status..NBL. MLL.rearrangement..ALL. Patient.last.alive.date Patient.last.alive.year Patient.OS.to.last.alive.date..days. Patient.EFS.from.Dx.to.1st.Progression..days. Time.from.Dx.to.sample.for.model..days. STR.OK Other_info1 Other_Info2 Tag Center Mouse.strain.and.source..initial. Mouse.strain..banking.passages. Tumor.prep Injection.type.and.site..initial.injection. Lag.from.injection.to.initial.harvest..days. Snap.frozen.material.used.to.generate.model.available. STR.Validation.of.Banked.Model EBV.PCR.testing Pathogenic.Virus.testing.Lab Pathogenic.Virus.results Passage.sent.for.genomics Size.of.tumors.harvested.for.genomics Size.of.tumors.harvested.for.banking.characterization..mm.. Lag.passage.1.injection.to.0.2cm.3..days...nbl...Lag.passage.1.injection.to.harvest.for.banking..days...leukemia. Total.time.to.3.cm.3..days...nbl....Lag.passage.2.injection.to.harvest.for.banking..days...leukemia. Doubling.time..days. Passage.for.doubling.time Max.number.of.passages.documented Matching.cell.line.from.same.patient.
yes yes yes yes yes PPTC-ALL-02-D-1.SNPFinalReports.txt PPTC-ALL-02-D yes TARGET-10-PPT085-60A-01D-human.bam NA TARGET-10-PPT085-60A-01D-human.bam 56f90352107f813f0fd46573f583a3d3 TARGET-10-PPT085-60A-01D-mouse.bam PPTC-ALL-02-R-human.bam b8a4cad58e7cd81cbbd08a67d9500239 PPTC-ALL-02-R-mouse.bam yes PPTC-ALL-02-R.human.genes.fpkm_tracking TARGET-10-PPT085-60A-01D.PDX.bam PPTCALL02-R-PDX.bam 3fd57e28ae61ecc6084daa868b8bee21 TARGET-10-PPT085-60A-01D-human TARGET-10-PPT085-60A-01D PPTCALL02-R PDX P0001 ALL-02 BCP-ALL PPTCALL02 10-PPTCALL02 TARGET-10-PPT085 ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-ALL-02 PPTC-ALL-02-D PPTC-ALL-02-R Yes Yes Yes No Yes Yes No NA Female Relapse Relapse Second 65 months 5.42 Unknown Mixed_or_Unknown Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy WT NA NA 1/12/99 1999 2309 911 1973 Yes G1 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 107 Yes (SNP) Negative 83 83 5.0 +/- 1.7 2 5
yes yes yes yes yes PPTC-ALL-03-D-1.SNPFinalReports.txt PPTC-ALL-03-D yes TARGET-10-PPT086-60A-01D-human.bam NA TARGET-10-PPT086-60A-01D-human.bam 7ec7b39d11e5d62f2fee9d239e539cbe TARGET-10-PPT086-60A-01D-mouse.bam PPTC-ALL-03-R-human.bam 35cf09b3406f0a2182e82e2afff8341f PPTC-ALL-03-R-mouse.bam yes PPTC-ALL-03-R.human.genes.fpkm_tracking TARGET-10-PPT086-60A-01D.PDX.bam PPTCALL03-R-PDX.bam c3b2c1c123293b1c0e60b5c454aa1ed8 TARGET-10-PPT086-60A-01D-human TARGET-10-PPT086-60A-01D PPTCALL03-R PDX P0002 ALL-03 MLL-ALL PPTCALL03 10-PPTCALL03 TARGET-10-PPT086 ALL MLL-ALL MLL-ALL MLL-ALL NA ALAL ALL ALL leukemia leukemia MLL-ALL leukemia Lock PPTC-ALL-03 PPTC-ALL-03-D PPTC-ALL-03-R Yes Yes Yes No Yes Yes No NA Female Diagnosis Diagnosis First 155 months 12.92 Unknown European Unknown Bone marrow t(11;19), MLL-MLLT1 Unknown Unknown No Prior Tx WT NA t(11;19), MLL-MLLT1 1/13/06 2006 4909 1178 1 Yes, discrepancy in vWA G2 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 72 Yes (SNP) 46 68 2.8 +/- 0.8 2-3 5
yes yes yes yes yes PPTC-ALL-04-D-1.SNPFinalReports.txt PPTC-ALL-04-D yes TARGET-10-PPT087-60A-02D-human.bam NA TARGET-10-PPT087-60A-02D-human.bam 7c4fef3782365712fbd7af36273a6dd5 TARGET-10-PPT087-60A-02D-mouse.bam PPTC-ALL-04-R-human.bam f014916d1e32b170fc2134afb0d1cfbc PPTC-ALL-04-R-mouse.bam yes PPTC-ALL-04-R.human.genes.fpkm_tracking TARGET-10-PPT087-60A-02D.PDX.bam PPTCALL04-R-PDX.bam cbbbc85b30c6b4bbe7cacbeec793a295 TARGET-10-PPT087-60A-02D-human TARGET-10-PPT087-60A-02D PPTCALL04-R PDX P0003 ALL-04 Ph+-ALL PPTCALL04 10-PPTCALL04 TARGET-10-PPT087 ALL Ph+-ALL Ph+-ALL Ph+-ALL NA BLLBCRABL1 ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-ALL-04 PPTC-ALL-04-D PPTC-ALL-04-R Yes Yes Yes No Yes Yes No ALL Male Diagnosis Diagnosis First 104 months 8.67 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx WT NA NA 12/1/99 1999 327 311 5 Yes G3 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 107 Yes (SNP) Negative 65 85 1.7 +/- 0.9 2 7 yes
yes yes yes yes yes PPTC-ALL-07-D-1.SNPFinalReports.txt PPTC-ALL-07-D yes TARGET-10-PPT088-60A-01D-human.bam NA TARGET-10-PPT088-60A-01D-human.bam 7a6384bea0210b4194a0abe736ce1182 TARGET-10-PPT088-60A-01D-mouse.bam PPTC-ALL-07-R-human.bam 1b1668e6547de94a3babaefdcee25fd1 PPTC-ALL-07-R-mouse.bam yes PPTC-ALL-07-R.human.genes.fpkm_tracking TARGET-10-PPT088-60A-01D.PDX.bam PPTCALL07-R-PDX.bam a97eba8d74c1b9a2a2592054a4b44fd1 TARGET-10-PPT088-60A-01D-human TARGET-10-PPT088-60A-01D PPTCALL07-R PDX P0004 ALL-07 BCP-ALL PPTCALL07 10-PPTCALL07 TARGET-10-PPT088 ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-ALL-07 PPTC-ALL-07-D PPTC-ALL-07-R Yes Yes Yes No Yes Yes No ALL Male Diagnosis Diagnosis First 88 months 7.33 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx WT NA NA 9/22/98 1998 410 228 0 Yes G4 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 75 Yes (SNP) Negative 52 30 2.9 +/- 0.6 2 4 yes
yes yes yes yes yes PPTC-ALL-08-D-1.SNPFinalReports.txt PPTC-ALL-08-D yes TARGET-10-PPT089-60A-02D-human.bam NA TARGET-10-PPT089-60A-02D-human.bam 1c0a8f5d6e9068fbd73751ad2df50cef TARGET-10-PPT089-60A-02D-mouse.bam PPTC-ALL-08-R-human.bam 5ebc4997d6b5f2c5aaeb6574b47bff58 PPTC-ALL-08-R-mouse.bam yes PPTC-ALL-08-R.human.genes.fpkm_tracking TARGET-10-PPT089-60A-02D.PDX.bam PPTCALL08-R-PDX.bam 19faecd8a624379869cba0bace63a444 TARGET-10-PPT089-60A-02D-human TARGET-10-PPT089-60A-02D PPTCALL08-R PDX P0005 ALL-08 T-ALL PPTCALL08 10-PPTCALL08 TARGET-10-PPT089 ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-ALL-08 PPTC-ALL-08-D PPTC-ALL-08-R Yes Yes Yes No Yes Yes No ALL Male Relapse Relapse Second 151 months 12.58 Unknown African Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy WT NA NA 10/2/99 1999 532 516 516 Yes G5 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 101 Yes (SNP) Negative 77 62 3.6 +/- 1.7 2-3 5
yes yes yes yes yes PPTC-ALL-10-D-1.SNPFinalReports.txt PPTC-ALL-10-D yes TARGET-10-PPT090-60A-01D-human.bam NA TARGET-10-PPT090-60A-01D-human.bam 2d43aef8f6a7c63fa3ad804405fa112e TARGET-10-PPT090-60A-01D-mouse.bam PPTC-ALL-10-R-human.bam d25e54403321dfa2969be72018d95d3c PPTC-ALL-10-R-mouse.bam yes PPTC-ALL-10-R.human.genes.fpkm_tracking TARGET-10-PPT090-60A-01D.PDX.bam PPTCALL10-R-PDX.bam 8fccd2e7a3fa294c64442244628ed249 TARGET-10-PPT090-60A-01D-human TARGET-10-PPT090-60A-01D PPTCALL10-R PDX P0006 ALL-10 Ph-likeALL PPTCALL10 10-PPTCALL10 TARGET-10-PPT090 ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-ALL-10 PPTC-ALL-10-D PPTC-ALL-10-R Yes Yes Yes No Yes Yes No ALL Male Diagnosis Diagnosis First 48 months 4.00 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx WT NA NA 1/12/06 2006 2653 0 0 Yes G9 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 69 Yes (SNP) 56 51 3.5 +/- 0.5 2-3 5
yes yes yes yes yes PPTC-AF02-XTP1-B-1-0-D-1.SNPFinalReports.txt PPTC-AF02-XTP1-B-1-0-D yes PPTC-AF02-XTP1-B-1-0-D-human.bam NA PPTC-AF02-XTP1-B-1-0-D-human.bam a72a12fc036bc11e8dd4364aee040e16 PPTC-AF02-XTP1-B-1-0-D-mouse.bam PPTC-AF02-XTP1-B-1-0-R.human.bam e0d55c6c6523c61c742db28ab457fe99 PPTC-AF02-XTP1-B-1-0-R.mouse.bam yes PPTC-AF02-XTP1-B-1-0-R.human.genes.fpkm_tracking PPTC-AF02-XTP1-B-1-0-D.PDX.bam PPTC-AF02-XTP1-B-1-0-R.PDX.bam PPTC-AF02-XTP1-B-1-0-D-human PPTC-AF02-XTP1-B-1-0-D PPTC-AF02-XTP1-B-1-0-R PDX P0007 ALL-102 BCP-ALL PPTCAF02XTP1B10 10-PPTCAF02XTP1B10 NA ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-AF02-XTP1-B-1-0 PPTC-AF02-XTP1-B-1-0-D PPTC-AF02-XTP1-B-1-0-R No No Yes No No No No NA Male Diagnosis Diagnosis First 37 months 3.08 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 10/27/09 2009 2443 827 0 Yes Same patient as ALL-105 (rel1) and ALL-115 (rel3) NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 156 Yes (SNP) 120 Not yet passaged 2
yes yes yes yes yes PPTC-AF03-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF03-XTP1-A-1-0-D yes PPTC-AF03-XTP1-A-1-0-D-human.bam NA PPTC-AF03-XTP1-A-1-0-D-human.bam b94212cff01a1f598c5b6351433d569c PPTC-AF03-XTP1-A-1-0-D-mouse.bam PPTC-AF03-XTP1-A-1-0-R.human.bam f55fae8477c1f404a29201c2ca7aa30d PPTC-AF03-XTP1-A-1-0-R.mouse.bam yes PPTC-AF03-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF03-XTP1-A-1-0-D.PDX.bam PPTC-AF03-XTP1-A-1-0-R.PDX.bam PPTC-AF03-XTP1-A-1-0-D-human PPTC-AF03-XTP1-A-1-0-D PPTC-AF03-XTP1-A-1-0-R PDX P0007 ALL-105 BCP-ALL PPTCAF03XTP1A10 10-PPTCAF03XTP1A10 NA ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-AF03-XTP1-A-1-0 PPTC-AF03-XTP1-A-1-0-D PPTC-AF03-XTP1-A-1-0-R No No Yes No No No No NA Male Relapse Relapse Second 37 months 3.08 Unknown European Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 10/27/09 2009 2443 827 827 Yes Same patient as ALL-102 (dx) and ALL-115 (rel3) NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 117 Yes (SNP) 121 Not yet passaged 2
yes yes yes yes yes PPTC-AF04-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF04-XTP1-A-1-0-D yes PPTC-AF04-XTP1-A-1-0-D-human.bam NA PPTC-AF04-XTP1-A-1-0-D-human.bam ff2b54d732a8d3d18f23bf6e65335074 PPTC-AF04-XTP1-A-1-0-D-mouse.bam PPTC-AF04-XTP1-A-1-0-R.human.bam 26e3b1e46ec044e91a4dc2c558b4f9e9 PPTC-AF04-XTP1-A-1-0-R.mouse.bam yes PPTC-AF04-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF04-XTP1-A-1-0-D.PDX.bam PPTC-AF04-XTP1-A-1-0-R.PDX.bam PPTC-AF04-XTP1-A-1-0-D-human PPTC-AF04-XTP1-A-1-0-D PPTC-AF04-XTP1-A-1-0-R PDX P0008 ALL-106 Ph-likeALL PPTCAF04XTP1A10 10-PPTCAF04XTP1A10 NA ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-AF04-XTP1-A-1-0 PPTC-AF04-XTP1-A-1-0-D PPTC-AF04-XTP1-A-1-0-R No No Yes No No No No NA Male Diagnosis Diagnosis First 179 months 14.92 Unknown SouthAsianOrHispanic Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 8/3/11 2011 365 0 0 Yes NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 289 Yes (SNP) 237 Not yet passaged 2
yes yes yes yes yes PPTC-AF05-XTP1-B-1-0-D-1.SNPFinalReports.txt PPTC-AF05-XTP1-B-1-0-D yes PPTC-AF05-XTP1-B-1-0-D-human.bam NA PPTC-AF05-XTP1-B-1-0-D-human.bam ceef0b481509073d918c9b1d160fc487 PPTC-AF05-XTP1-B-1-0-D-mouse.bam PPTC-AF05-XTP1-B-1-0-R.human.bam 2e2bb068f639ee7afb4049d0b82f5d2e PPTC-AF05-XTP1-B-1-0-R.mouse.bam yes PPTC-AF05-XTP1-B-1-0-R.human.genes.fpkm_tracking PPTC-AF05-XTP1-B-1-0-D.PDX.bam PPTC-AF05-XTP1-B-1-0-R.PDX.bam PPTC-AF05-XTP1-B-1-0-D-human PPTC-AF05-XTP1-B-1-0-D PPTC-AF05-XTP1-B-1-0-R PDX P0009 ALL-107 Ph-likeALL PPTCAF05XTP1B10 10-PPTCAF05XTP1B10 NA ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-AF05-XTP1-B-1-0 PPTC-AF05-XTP1-B-1-0-D PPTC-AF05-XTP1-B-1-0-R No No Yes No No No No NA Male Diagnosis Diagnosis First 66 months 5.50 Unknown Mixed_or_Unknown Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 1/22/14 2014 1064 805 0 Yes NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 127 Yes (SNP) Not yet passaged Not yet passaged 1
yes yes yes yes yes PPTC-AF06-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF06-XTP1-A-1-0-D yes PPTC-AF06-XTP1-A-1-0-D-human.bam NA PPTC-AF06-XTP1-A-1-0-D-human.bam 937de72c62610edca6e7b7a9d5890e19 PPTC-AF06-XTP1-A-1-0-D-mouse.bam PPTC-AF06-XTP1-A-1-0-R.human.bam 93d1c265fa1b39c6009ff74bb9d1cac9 PPTC-AF06-XTP1-A-1-0-R.mouse.bam yes PPTC-AF06-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF06-XTP1-A-1-0-D.PDX.bam PPTC-AF06-XTP1-A-1-0-R.PDX.bam PPTC-AF06-XTP1-A-1-0-D-human PPTC-AF06-XTP1-A-1-0-D PPTC-AF06-XTP1-A-1-0-R PDX P0010 ALL-108 Ph-likeALL PPTCAF06XTP1A10 10-PPTCAF06XTP1A10 NA ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-AF06-XTP1-A-1-0 PPTC-AF06-XTP1-A-1-0-D PPTC-AF06-XTP1-A-1-0-R No No Yes No No No No NA Female Diagnosis Diagnosis First 74 months 6.17 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 2/25/11 2011 990 990 0 Yes NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 189 Yes (SNP) Not yet passaged Not yet passaged 1
yes yes yes yes yes PPTC-AF07-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF07-XTP1-A-1-0-D yes TARGET-10-PPT091-60A-02D-human.bam NA TARGET-10-PPT091-60A-02D-human.bam 1693b5dda5084353871fb1f636811e45 TARGET-10-PPT091-60A-02D-mouse.bam PPTC-AF07-XTP1-A-1-0-R.human.bam f46474393e0a36c39bdf3fdd8f13ba9d PPTC-AF07-XTP1-A-1-0-R.mouse.bam yes PPTC-AF07-XTP1-A-1-0-R.human.genes.fpkm_tracking TARGET-10-PPT091-60A-02D.PDX.bam PPTC-AF07-XTP1-A-1-0-R.PDX.bam TARGET-10-PPT091-60A-02D-human TARGET-10-PPT091-60A-02D PPTC-AF07-XTP1-A-1-0-R PDX P0011 ALL-11 BCP-ALL PPTCAF07XTP1A10 10-PPTCAF07XTP1A10 TARGET-10-PPT091 ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-AF07-XTP1-A-1-0 PPTC-AF07-XTP1-A-1-0-D PPTC-AF07-XTP1-A-1-0-R No Yes Yes No No No No ALL Female Diagnosis Diagnosis First 37 months 3.08 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx WT NA NA 6/27/06 2006 4723 0 1 Yes G10 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 113 Yes (SNP) 112 81 5.1 +/- 0.6 2 6
yes yes yes yes yes PPTC-AF08-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF08-XTP1-A-1-0-D yes PPTC-AF08-XTP1-A-1-0-D-human.bam NA PPTC-AF08-XTP1-A-1-0-D-human.bam 18b3d0adca5e6ca8c40599243370d7e2 PPTC-AF08-XTP1-A-1-0-D-mouse.bam PPTC-AF08-XTP1-A-1-0-R.human.bam bb6483e182e5f05451d2c2db1dfb0515 PPTC-AF08-XTP1-A-1-0-R.mouse.bam yes PPTC-AF08-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF08-XTP1-A-1-0-D.PDX.bam PPTC-AF08-XTP1-A-1-0-R.PDX.bam PPTC-AF08-XTP1-A-1-0-D-human PPTC-AF08-XTP1-A-1-0-D PPTC-AF08-XTP1-A-1-0-R PDX P0007 ALL-115 BCP-ALL PPTCAF08XTP1A10 10-PPTCAF08XTP1A10 NA ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-AF08-XTP1-A-1-0 PPTC-AF08-XTP1-A-1-0-D PPTC-AF08-XTP1-A-1-0-R No No Yes No No No No NA Male Relapse Relapse Second 37 months 3.08 Unknown European Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 3/26/10 2010 2443 827 2293 Yes Same patient as ALL-102 (dx) and ALL-105 (rel1) NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 248 Yes (SNP) 161 Not yet passaged 2
yes yes yes yes yes PPTC-AF09-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF09-XTP1-A-1-0-D yes PPTC-AF09-XTP1-A-1-0-D-human.bam NA PPTC-AF09-XTP1-A-1-0-D-human.bam 559abb8b88d432f389489ad202c40b6b PPTC-AF09-XTP1-A-1-0-D-mouse.bam PPTC-AF09-XTP1-A-1-0-R.human.bam 0d436a9e1be7a220a7d1a9122bf159cf PPTC-AF09-XTP1-A-1-0-R.mouse.bam yes PPTC-AF09-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF09-XTP1-A-1-0-D.PDX.bam PPTC-AF09-XTP1-A-1-0-R.PDX.bam PPTC-AF09-XTP1-A-1-0-D-human PPTC-AF09-XTP1-A-1-0-D PPTC-AF09-XTP1-A-1-0-R PDX P0012 ALL-116 Ph-likeALL PPTCAF09XTP1A10 10-PPTCAF09XTP1A10 NA ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-AF09-XTP1-A-1-0 PPTC-AF09-XTP1-A-1-0-D PPTC-AF09-XTP1-A-1-0-R No No Yes No No No No NA Female Diagnosis Diagnosis First 199 months 16.58 Unknown European Unknown Peripheral blood Not noted Unknown Unknown Unknown NA NA 2014 2014 2716 1155 Yes PARCFU NA CCI NSG NSG intravenous, either lateral tail vein 244 Samples in queue 185 Not yet passaged 2
yes yes yes yes yes PPTC-AF0A-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0A-XTP1-A-1-0-D yes PPTC-AF0A-XTP1-A-1-0-D-human.bam NA PPTC-AF0A-XTP1-A-1-0-D-human.bam 862c55223b7a19b23e7910152899c4e7 PPTC-AF0A-XTP1-A-1-0-D-mouse.bam PPTC-AF0A-XTP1-A-1-0-R.human.bam edc88e63c10aeded9ff76456498a5fdb PPTC-AF0A-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0A-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF0A-XTP1-A-1-0-D.PDX.bam PPTC-AF0A-XTP1-A-1-0-R.PDX.bam PPTC-AF0A-XTP1-A-1-0-D-human PPTC-AF0A-XTP1-A-1-0-D PPTC-AF0A-XTP1-A-1-0-R PDX P0013 ALL-117 Ph-likeALL PPTCAF0AXTP1A10 10-PPTCAF0AXTP1A10 NA ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-AF0A-XTP1-A-1-0 PPTC-AF0A-XTP1-A-1-0-D PPTC-AF0A-XTP1-A-1-0-R No No Yes No No No No NA Male Diagnosis Diagnosis First 169 months 14.08 Unknown European Unknown Bone marrow Not noted Unknown Unknown Unknown NA NA 2006 2006 383 351 Yes PANWJB NA CCI NSG NSG intravenous, either lateral tail vein 140 Samples in queue Not yet passaged Not yet passaged 2
yes yes yes yes yes PPTC-AF0B-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0B-XTP1-A-1-0-D yes PPTC-AF0B-XTP1-A-1-0-D-human.bam NA PPTC-AF0B-XTP1-A-1-0-D-human.bam b6a0a77c05cfc3f8103b516bcb205a66 PPTC-AF0B-XTP1-A-1-0-D-mouse.bam PPTC-AF0B-XTP1-A-1-0-R.human.bam 40b7e5428da7a3808917c5e3387a574f PPTC-AF0B-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0B-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF0B-XTP1-A-1-0-D.PDX.bam PPTC-AF0B-XTP1-A-1-0-R.PDX.bam PPTC-AF0B-XTP1-A-1-0-D-human PPTC-AF0B-XTP1-A-1-0-D PPTC-AF0B-XTP1-A-1-0-R PDX P0014 ALL-118 Ph-likeALL PPTCAF0BXTP1A10 10-PPTCAF0BXTP1A10 NA ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-AF0B-XTP1-A-1-0 PPTC-AF0B-XTP1-A-1-0-D PPTC-AF0B-XTP1-A-1-0-R No No Yes No No No No NA Female Diagnosis Diagnosis First 155 months 12.92 Unknown European Unknown Bone marrow Not noted Unknown Unknown Unknown NA NA 2012 2012 2515 N/A Yes PANNGL NA CCI NSG NSG intravenous, either lateral tail vein 90 Samples in queue 85 85 3
yes yes yes yes yes PPTC-AF0C-XTP1-B-1-0-D-1.SNPFinalReports.txt PPTC-AF0C-XTP1-B-1-0-D yes PPTC-AF0C-XTP1-B-1-0-D-human.bam NA PPTC-AF0C-XTP1-B-1-0-D-human.bam 94eca0bf8f3258c62f0388dd637966ef PPTC-AF0C-XTP1-B-1-0-D-mouse.bam PPTC-AF0C-XTP1-B-1-0-R.human.bam 83546d87502744b4a124dc2d8206c82c PPTC-AF0C-XTP1-B-1-0-R.mouse.bam yes PPTC-AF0C-XTP1-B-1-0-R.human.genes.fpkm_tracking PPTC-AF0C-XTP1-B-1-0-D.PDX.bam PPTC-AF0C-XTP1-B-1-0-R.PDX.bam PPTC-AF0C-XTP1-B-1-0-D-human PPTC-AF0C-XTP1-B-1-0-D PPTC-AF0C-XTP1-B-1-0-R PDX P0015 ALL-121 T-ALL PPTCAF0CXTP1B10 10-PPTCAF0CXTP1B10 NA ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-AF0C-XTP1-B-1-0 PPTC-AF0C-XTP1-B-1-0-D PPTC-AF0C-XTP1-B-1-0-R No No Yes No No No No NA Male Relapse Relapse Second 190 months 15.83 Unknown European Unknown Bone marrow Resistant disease Unknown Unknown Prior Chemotherapy NA NA 6/15/10 2010 621 445 445 Yes Same patient as ALL-46 (dx) NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 41 Yes (SNP) - ref is PDX 1o 26 26 3
yes yes yes yes yes PPTC-AF0D-XTP1-B-1-0-D-1.SNPFinalReports.txt PPTC-AF0D-XTP1-B-1-0-D yes PPTC-AF0D-XTP1-B-1-0-D-human.bam NA PPTC-AF0D-XTP1-B-1-0-D-human.bam 9663a0355c4ff2fb266a1c8208b87f66 PPTC-AF0D-XTP1-B-1-0-D-mouse.bam PPTC-AF0D-XTP1-B-1-0-R.human.bam c88ddba7c70dd258be68333d5d05f7aa PPTC-AF0D-XTP1-B-1-0-R.mouse.bam yes PPTC-AF0D-XTP1-B-1-0-R.human.genes.fpkm_tracking PPTC-AF0D-XTP1-B-1-0-D.PDX.bam PPTC-AF0D-XTP1-B-1-0-R.PDX.bam PPTC-AF0D-XTP1-B-1-0-D-human PPTC-AF0D-XTP1-B-1-0-D PPTC-AF0D-XTP1-B-1-0-R PDX P0016 ALL-122 BCP-ALL PPTCAF0DXTP1B10 10-PPTCAF0DXTP1B10 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-AF0D-XTP1-B-1-0 PPTC-AF0D-XTP1-B-1-0-D PPTC-AF0D-XTP1-B-1-0-R No No Yes No No No No NA Female Relapse Relapse Second 59 months 4.92 Unknown SouthAsianOrHispanic Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 7/2/13 2013 967 646 878 Yes NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 133 Samples in queue 71 Not yet passaged 2
yes yes yes yes yes PPTC-AF0E-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0E-XTP1-A-1-0-D yes PPTC-AF0E-XTP1-A-1-0-D-human.bam NA PPTC-AF0E-XTP1-A-1-0-D-human.bam f8e2f232376ef119149a437ee39f3e9c PPTC-AF0E-XTP1-A-1-0-D-mouse.bam PPTC-AF0E-XTP1-A-1-0-R.human.bam 8bae9e813b454b7d5891720dfdd66d3f PPTC-AF0E-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0E-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF0E-XTP1-A-1-0-D.PDX.bam PPTC-AF0E-XTP1-A-1-0-R.PDX.bam PPTC-AF0E-XTP1-A-1-0-D-human PPTC-AF0E-XTP1-A-1-0-D PPTC-AF0E-XTP1-A-1-0-R PDX P0017 ALL-123 BCP-ALL PPTCAF0EXTP1A10 10-PPTCAF0EXTP1A10 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-AF0E-XTP1-A-1-0 PPTC-AF0E-XTP1-A-1-0-D PPTC-AF0E-XTP1-A-1-0-R No No Yes No No No No NA Female Relapse Relapse Second 29 months 2.42 Unknown European Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 2/14/06 2006 749 584 584 Yes Same patient as ALL-58 (dx) NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 93 Yes (SNP) 57 Not yet passaged 2
yes yes yes yes yes PPTC-AF0F-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0F-XTP1-A-1-0-D yes TARGET-10-PPT092-60A-01D-human.bam NA TARGET-10-PPT092-60A-01D-human.bam ac70dfdb0f79a940f804edf82de175f2 TARGET-10-PPT092-60A-01D-mouse.bam PPTC-AF0F-XTP1-A-1-0-R.human.bam 4e8265ff05182ec2e95c23d71c2807b6 PPTC-AF0F-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0F-XTP1-A-1-0-R.human.genes.fpkm_tracking TARGET-10-PPT092-60A-01D.PDX.bam PPTC-AF0F-XTP1-A-1-0-R.PDX.bam TARGET-10-PPT092-60A-01D-human TARGET-10-PPT092-60A-01D PPTC-AF0F-XTP1-A-1-0-R PDX P0018 ALL-16 T-ALL PPTCAF0FXTP1A10 10-PPTCAF0FXTP1A10 TARGET-10-PPT092 ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-AF0F-XTP1-A-1-0 PPTC-AF0F-XTP1-A-1-0-D PPTC-AF0F-XTP1-A-1-0-R No Yes Yes No No No No ALL Female Diagnosis Diagnosis First 122 months 10.17 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx WT NA NA 1/16/06 2006 4053 0 1 Yes G6 CCI NOD/SCID NOD/SCID and 3KO and NSG intravenous, either lateral tail vein 106 Yes (SNP) 76.5 85 2.6 +/- 1.4 2 4
yes yes yes yes no NA NA yes TARGET-10-PPT093-60A-02D-human.bam NA TARGET-10-PPT093-60A-02D-human.bam 06717356ba45794dd38037ca84ec25db TARGET-10-PPT093-60A-02D-mouse.bam PPTC-AF0G-XTP1-A-1-0-R.human.bam 0e9e89f4dfa10cb29fd58126fe189acb PPTC-AF0G-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0G-XTP1-A-1-0-R.human.genes.fpkm_tracking TARGET-10-PPT093-60A-02D.PDX.bam PPTC-AF0G-XTP1-A-1-0-R.PDX.bam TARGET-10-PPT093-60A-02D-human TARGET-10-PPT093-60A-02D PPTC-AF0G-XTP1-A-1-0-R PDX P0019 ALL-17 BCP-ALL PPTCAF0GXTP1A10 10-PPTCAF0GXTP1A10 TARGET-10-PPT093 ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-AF0G-XTP1-A-1-0 PPTC-AF0G-XTP1-A-1-0-D PPTC-AF0G-XTP1-A-1-0-R No Yes Yes No No No No ALL Female Diagnosis Diagnosis First 107 months 8.92 Unknown NA Unknown Bone marrow Not noted Unknown Unknown No Prior Tx WT NA NA 10/4/10 2010 4340 758 1 Yes G7 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 97 Yes (SNP) Negative 55 106 2.7 +/- 0.4 2-3 4
yes yes yes yes yes PPTC-ALL-19-D-1.SNPFinalReports.txt PPTC-ALL-19-D yes TARGET-10-PPT094-60A-01D-human.bam NA TARGET-10-PPT094-60A-01D-human.bam 652de873db5fc3631534c4088be5ac01 TARGET-10-PPT094-60A-01D-mouse.bam PPTC-ALL-19-R-human.bam b136051374047adfa3ee5ef3ba530f13 PPTC-ALL-19-R-mouse.bam yes PPTC-ALL-19-R.human.genes.fpkm_tracking TARGET-10-PPT094-60A-01D.PDX.bam PPTCALL19-R-PDX.bam 97af4edcdc7145a73a3d7d027a4bdc7b TARGET-10-PPT094-60A-01D-human TARGET-10-PPT094-60A-01D PPTC-ALL-19-R PDX P0020 ALL-19 BCP-ALL PPTCALL19 10-PPTCALL19 TARGET-10-PPT094 ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-ALL-19 PPTC-ALL-19-D PPTC-ALL-19-R Yes Yes Yes No Yes Yes No ALL Male Relapse Relapse Second 193 months 16.08 Unknown European Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy WT NA NA 1/27/00 2000 352 141 142 Yes G8 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 66 Yes (SNP) - ref is PDX 1o Negative 66.5 106 2.3 +/- 0.7 2-3 5
yes yes yes yes yes PPTC-ALL-25-D.SNPFinalReports.txt PPTC-ALL-25-D yes PPTCALL25-D-human.bam FALSE PPTC-ALL-25-D-human.bam fe5b15d14fd0ea57015f96bff88b8a01 PPTC-ALL-25-D-mouse.bam PPTC-ALL-25-R-human.bam 297ecd31e55903b91b921387e1619153 PPTC-ALL-25-R-mouse.bam yes PPTC-ALL-25-R.human.genes.fpkm_tracking PPTCALL25-D-PDX.bam db97a9bf4733d5f76cffb8b1bc96ecc1 PPTCALL25-R-PDX.bam 2d069dc381b499bb6c0e453b98afc441 PPTC-ALL-25-D-human PPTC-ALL-25-D PPTC-ALL-25-R PDX P0021 ALL-25 BCP-ALL PPTCALL25 10-PPTCALL25 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-ALL-25 PPTC-ALL-25-D PPTC-ALL-25-R Yes No Yes No Yes Yes Yes NA Male Diagnosis Diagnosis First 146 months 12.17 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 1/20/06 2006 839 724 0 Yes Same patient as ALL-61 (rel) NA CCI NOD/SCID (ABR) NOD/SCID and NSG intravenous, either lateral tail vein 139 Yes (SNP) 67 146 4
yes yes yes yes yes PPTC-AF0H-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0H-XTP1-A-1-0-D yes PPTC-AF0H-XTP1-A-1-0-D-human.bam NA PPTC-AF0H-XTP1-A-1-0-D-human.bam a3f26630e2cf96063ae559f55e980829 PPTC-AF0H-XTP1-A-1-0-D-mouse.bam PPTC-AF0H-XTP1-A-1-0-R.human.bam 85ec8df752026662b60a744de1b260b6 PPTC-AF0H-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0H-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF0H-XTP1-A-1-0-D.PDX.bam PPTC-AF0H-XTP1-A-1-0-R.PDX.bam 820b4b8a9264b770a73532c9f74ff72f PPTC-AF0H-XTP1-A-1-0-D-human PPTC-AF0H-XTP1-A-1-0-D PPTC-AF0H-XTP1-A-1-0-R PDX P0022 ALL-26 BCP-ALL PPTCAF0HXTP1A10 10-PPTCAF0HXTP1A10 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-AF0H-XTP1-A-1-0 PPTC-AF0H-XTP1-A-1-0-D PPTC-AF0H-XTP1-A-1-0-R No No Yes No No No No NA Female Diagnosis Diagnosis First 43 months 3.58 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 3/17/03 2003 0 0 Yes NA CCI NOD/SCID (ABR) NSG intravenous, either lateral tail vein 137 Yes (SNP) 92 149 4
yes yes yes yes yes PPTC-ALL-27-D-1.SNPFinalReports.txt PPTC-ALL-27-D yes TARGET-10-PPT096-60A-01D-human.bam NA TARGET-10-PPT096-60A-01D-human.bam fa948d0af8bf4eec749fd353d0731013 TARGET-10-PPT096-60A-01D-mouse.bam PPTC-ALL-27-R-human.bam cf5a1d12211aa5faa41b36318e9e2224 PPTC-ALL-27-R-mouse.bam yes PPTC-ALL-27-R.human.genes.fpkm_tracking TARGET-10-PPT096-60A-01D.PDX.bam PPTCALL27-R-PDX.bam TARGET-10-PPT096-60A-01D-human TARGET-10-PPT096-60A-01D PPTC-ALL-27-D PDX P0023 ALL-27 T-ALL PPTCALL27 10-PPTCALL27 TARGET-10-PPT096 ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-ALL-27 PPTC-ALL-27-D PPTC-ALL-27-R Yes Yes Yes No Yes Yes No ALL Male Diagnosis Diagnosis First 102 months 8.50 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 10/24/05 2005 881 309 0 Yes G11 CCI NOD/SCID and 3KO NOD/SCID and NSG intravenous, either lateral tail vein 124 Yes (SNP) 123 161 5
yes yes yes yes yes PPTC-AF0I-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0I-XTP1-A-1-0-D yes PPTC-AF0I-XTP1-A-1-0-D-human.bam NA PPTC-AF0I-XTP1-A-1-0-D-human.bam 0d8f7d9ce3cd17ff22ac80a46f031ed6 PPTC-AF0I-XTP1-A-1-0-D-mouse.bam PPTC-AF0I-XTP1-A-1-0-R.human.bam 9275c851bca8a8f3edf262b6ff44d62d PPTC-AF0I-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0I-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF0I-XTP1-A-1-0-D.PDX.bam PPTC-AF0I-XTP1-A-1-0-R.PDX.bam PPTC-AF0I-XTP1-A-1-0-D-human PPTC-AF0I-XTP1-A-1-0-D PPTC-AF0I-XTP1-A-1-0-R PDX P0024 ALL-28 BCP-ALL PPTCAF0IXTP1A10 10-PPTCAF0IXTP1A10 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-AF0I-XTP1-A-1-0 PPTC-AF0I-XTP1-A-1-0-D PPTC-AF0I-XTP1-A-1-0-R No No Yes No No No No NA Male Diagnosis Diagnosis First 19 months 1.58 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 5/8/03 2003 0 0 Yes NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 176 Yes (SNP) 124 159 4
yes yes yes yes yes PPTC-AF0J-XTP1-B-1-0-D-1.SNPFinalReports.txt PPTC-AF0J-XTP1-B-1-0-D yes TARGET-10-PPT097-60A-01D-human.bam NA TARGET-10-PPT097-60A-01D-human.bam 640c95f7a0c5bdc41836316f2268e618 TARGET-10-PPT097-60A-01D-mouse.bam PPTC-AF0J-XTP1-B-1-0-R.human.bam b2b00c9066f81250964c02d39e94b806 PPTC-AF0J-XTP1-B-1-0-R.mouse.bam yes PPTC-AF0J-XTP1-B-1-0-R.human.genes.fpkm_tracking TARGET-10-PPT097-60A-01D.PDX.bam PPTC-AF0J-XTP1-B-1-0-R.PDX.bam TARGET-10-PPT097-60A-01D-human TARGET-10-PPT097-60A-01D PPTC-AF0J-XTP1-B-1-0-R PDX P0025 ALL-29 T-ALL PPTCAF0JXTP1B10 10-PPTCAF0JXTP1B10 TARGET-10-PPT097 ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-AF0J-XTP1-B-1-0 PPTC-AF0J-XTP1-B-1-0-D PPTC-AF0J-XTP1-B-1-0-R No Yes Yes No No No No ALL Male Diagnosis Diagnosis First 59 months 4.92 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 11/16/01 2001 0 0 Yes G12 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 108 Yes (SNP) 44 46 4
yes yes yes yes yes PPTC-ALL-30-D-1.SNPFinalReports.txt PPTC-ALL-30-D yes TARGET-10-PPT098-60A-01D-human.bam NA TARGET-10-PPT098-60A-01D-human.bam ae3559aedd15718a9c66e122f3f5555c TARGET-10-PPT098-60A-01D-mouse.bam PPTC-ALL-30-R-human.bam 3c6c27417a60a7e4e74c116114839345 PPTC-ALL-30-R-mouse.bam yes PPTC-ALL-30-R.human.genes.fpkm_tracking TARGET-10-PPT098-60A-01D.PDX.bam PPTCALL30-R-PDX.bam bb3f98741386eea0530e6362f065d0b3 TARGET-10-PPT098-60A-01D-human TARGET-10-PPT098-60A-01D TARGET-10-PPT098-60A-01R PDX P0026 ALL-30 T-ALL PPTCALL30 10-PPTCALL30 TARGET-10-PPT098 ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-ALL-30 PPTC-ALL-30-D PPTC-ALL-30-R Yes Yes Yes No Yes Yes No ALL Male Diagnosis Diagnosis First 89 months 7.42 Unknown EastAsian Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 4/19/04 2004 393 0 0 Yes G13 CCI NOD/SCID NSG intravenous, either lateral tail vein 103 Yes (SNP) 131 80 4
yes yes yes yes yes PPTC-ALL-31-D-1.SNPFinalReports.txt PPTC-ALL-31-D yes TARGET-10-PPT099-60A-01D-human.bam NA TARGET-10-PPT099-60A-01D-human.bam c15edf078e12f77d16207b24865ab91c TARGET-10-PPT099-60A-01D-mouse.bam PPTC-ALL-31-R-human.bam 39fd21a6b4b3250b5dc371c8af33fc01 PPTC-ALL-31-R-mouse.bam yes PPTC-ALL-31-R.human.genes.fpkm_tracking TARGET-10-PPT099-60A-01D.PDX.bam PPTCALL31-R-PDX.bam e10ab776272a6d05d46c3a072faff197 TARGET-10-PPT099-60A-01D-human TARGET-10-PPT099-60A-01D TARGET-10-PPT099-60A-01R PDX P0027 ALL-31 T-ALL PPTCALL31 10-PPTCALL31 TARGET-10-PPT099 ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-ALL-31 PPTC-ALL-31-D PPTC-ALL-31-R Yes Yes Yes No Yes Yes No ALL Male Diagnosis Diagnosis First 121 months 10.08 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 3/15/06 2006 144 0 0 Yes G14 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 119 Yes (SNP) Negative 158 64 6
yes yes yes yes yes PPTC-ALL-32-D-1.SNPFinalReports.txt PPTC-ALL-32-D yes TARGET-10-PPT100-60A-01D-human.bam NA TARGET-10-PPT100-60A-01D-human.bam a4a61cd1538565c6dea2d631955638c4 TARGET-10-PPT100-60A-01D-mouse.bam PPTC-ALL-32-R-human.bam cc7c68e3c8915a7dee832a4c2c4ffd77 PPTC-ALL-32-R-mouse.bam yes PPTC-ALL-32-R.human.genes.fpkm_tracking TARGET-10-PPT100-60A-01D.PDX.bam PPTCALL32-R-PDX.bam 58865501aacbe07bfbb90fb391f3df10 TARGET-10-PPT100-60A-01D-human TARGET-10-PPT100-60A-01D TARGET-10-PPT100-60A-01R PDX P0028 ALL-32 T-ALL PPTCALL32 10-PPTCALL32 TARGET-10-PPT100 ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-ALL-32 PPTC-ALL-32-D PPTC-ALL-32-R Yes Yes Yes No Yes Yes No ALL Male Relapse Relapse Second 133 months 11.08 Unknown European Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 7/9/08 2008 449 294 294 Yes Same patient as ALL-90 (rel) G16 CCI NOD/SCID and NSG NOD/SCID and NSG intravenous, either lateral tail vein 69 Yes (SNP) 50 41 4
yes yes yes yes yes PPTC-AF0K-XTP1-B-1-0-D-1.SNPFinalReports.txt PPTC-AF0K-XTP1-B-1-0-D yes TARGET-10-PPT101-60A-01D-human.bam NA TARGET-10-PPT101-60A-01D-human.bam 9323e2097f9c485273ed4146f9ee7a8e TARGET-10-PPT101-60A-01D-mouse.bam PPTC-AF0K-XTP1-B-1-0-R.human.bam c75a870485714a2d3fe1bb58cba95e52 PPTC-AF0K-XTP1-B-1-0-R.mouse.bam yes PPTC-AF0K-XTP1-B-1-0-R.human.genes.fpkm_tracking TARGET-10-PPT101-60A-01D.PDX.bam PPTC-AF0K-XTP1-B-1-0-R.PDX.bam TARGET-10-PPT101-60A-01D-human TARGET-10-PPT101-60A-01D PPTC-AF0K-XTP1-B-1-0-R PDX P0029 ALL-33 T-ALL PPTCAF0KXTP1B10 10-PPTCAF0KXTP1B10 TARGET-10-PPT101 ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-AF0K-XTP1-B-1-0 PPTC-AF0K-XTP1-B-1-0-D PPTC-AF0K-XTP1-B-1-0-R No Yes Yes No No No No ALL Male Diagnosis Diagnosis First 88 months 7.33 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 4/3/07 2007 0 0 Yes G17 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 92 Yes (SNP) 53 43 4
yes yes yes yes yes PPTC-AF0L-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0L-XTP1-A-1-0-D yes PPTC-AF0L-XTP1-A-1-0-D-human.bam NA PPTC-AF0L-XTP1-A-1-0-D-human.bam b9669e81baabc40df39df2e1867af40b PPTC-AF0L-XTP1-A-1-0-D-mouse.bam PPTC-AF0L-XTP1-A-1-0-R.human.bam 9a5932a0fea56ba00c2c9a6743dcfa27 PPTC-AF0L-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0L-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF0L-XTP1-A-1-0-D.PDX.bam PPTC-AF0L-XTP1-A-1-0-R.PDX.bam PPTC-AF0L-XTP1-A-1-0-D-human PPTC-AF0L-XTP1-A-1-0-D PPTC-AF0L-XTP1-A-1-0-R PDX P0030 ALL-39 T-ALL PPTCAF0LXTP1A10 10-PPTCAF0LXTP1A10 NA ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-AF0L-XTP1-A-1-0 PPTC-AF0L-XTP1-A-1-0-D PPTC-AF0L-XTP1-A-1-0-R No No Yes No No No No NA Male Relapse Relapse Second 86 months 7.17 Unknown Mixed_or_Unknown Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 5/5/08 2008 893 728 728 Yes NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 105 Yes (SNP) 64 Unknown 4
yes yes yes yes yes PPTC-ALL-42-D.SNPFinalReports.txt PPTC-ALL-42-D yes PPTCALL42-D-human.bam FALSE PPTC-ALL-42-D-human.bam c4883fe5cd12a3dca5a87d804ad82011 PPTC-ALL-42-D-mouse.bam PPTC-ALL-42-R-human.bam bda551423755b23d6079c82554332c75 PPTC-ALL-42-R-mouse.bam yes PPTC-ALL-42-R.human.genes.fpkm_tracking PPTCALL42-D-PDX.bam 62d0e726c188d958043278fedbdb7c51 PPTCALL42-R-PDX.bam b8c0d80d63cea1db2d913be98bcefe58 PPTC-ALL-42-D-human PPTC-ALL-42-D PPTC-ALL-42-R PDX P0031 ALL-42 T-ALL PPTCALL42 10-PPTCALL42 NA ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-ALL-42 PPTC-ALL-42-D PPTC-ALL-42-R Yes No Yes No Yes Yes Yes NA Male Diagnosis Diagnosis First 31 months 2.58 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 11/17/10 2010 645 486 0 Yes NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 42 Yes (SNP) 27 42 4
yes yes yes yes yes PPTC-AF0M-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0M-XTP1-A-1-0-D yes PPTC-AF0M-XTP1-A-1-0-D-human.bam NA PPTC-AF0M-XTP1-A-1-0-D-human.bam bb8efae1d662f1e26612b51961c50111 PPTC-AF0M-XTP1-A-1-0-D-mouse.bam PPTC-AF0M-XTP1-A-1-0-R.human.bam bf2b9a11f3fdccd3cc5d0828d355d038 PPTC-AF0M-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0M-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF0M-XTP1-A-1-0-D.PDX.bam PPTC-AF0M-XTP1-A-1-0-R.PDX.bam PPTC-AF0M-XTP1-A-1-0-D-human PPTC-AF0M-XTP1-A-1-0-D PPTC-AF0M-XTP1-A-1-0-R PDX P0032 ALL-43 T-ALL PPTCAF0MXTP1A10 10-PPTCAF0MXTP1A10 NA ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-AF0M-XTP1-A-1-0 PPTC-AF0M-XTP1-A-1-0-D PPTC-AF0M-XTP1-A-1-0-R No No Yes No No No No NA Male Diagnosis Diagnosis First 73 months 6.08 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 7/28/11 2011 6709 710 0 Yes NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 89 Yes (SNP) 56 78 4
yes yes yes yes yes PPTC-AF0N-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0N-XTP1-A-1-0-D yes PPTC-AF0N-XTP1-A-1-0-D-human.bam NA PPTC-AF0N-XTP1-A-1-0-D-human.bam b89ae210b1c7221faaa9add61cc5a4e4 PPTC-AF0N-XTP1-A-1-0-D-mouse.bam PPTC-AF0N-XTP1-A-1-0-R.human.bam 3c728bcc4e46b7967d19e7781b54d398 PPTC-AF0N-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0N-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF0N-XTP1-A-1-0-D.PDX.bam PPTC-AF0N-XTP1-A-1-0-R.PDX.bam PPTC-AF0N-XTP1-A-1-0-D-human PPTC-AF0N-XTP1-A-1-0-D PPTC-AF0N-XTP1-A-1-0-R PDX P0015 ALL-46 T-ALL PPTCAF0NXTP1A10 10-PPTCAF0NXTP1A10 NA ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-AF0N-XTP1-A-1-0 PPTC-AF0N-XTP1-A-1-0-D PPTC-AF0N-XTP1-A-1-0-R No No Yes No No No No NA Male Diagnosis Diagnosis First 190 months 15.83 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 6/15/10 2010 621 445 0 Yes Same patient as ALL-121 (rel) NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 42 Yes (SNP) 26 21 4
yes yes yes yes yes PPTC-ALL-47-D.SNPFinalReports.txt PPTC-ALL-47-D yes PPTCALL47-D-human.bam FALSE PPTC-ALL-47-D-human.bam 40317cec399f66ccca5e8db8a0aaeebf PPTC-ALL-47-D-mouse.bam PPTC-ALL-47-R-human.bam df93e6a77ff92fe016bcad18f9af5780 PPTC-ALL-47-R-mouse.bam yes PPTC-ALL-47-R.human.genes.fpkm_tracking PPTCALL47-D-PDX.bam 4f8989a80dd195c8f56f9d05ac409b24 PPTCALL47-R-PDX.bam 79e16a587767dae9cbfd533896bab9fe PPTC-ALL-47-D-human PPTC-ALL-47-D PPTC-ALL-47-R PDX P0033 ALL-47 T-ALL PPTCALL47 10-PPTCALL47 NA ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-ALL-47 PPTC-ALL-47-D PPTC-ALL-47-R Yes No Yes No Yes Yes Yes NA Female Diagnosis Diagnosis First 77 months 6.42 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 11/6/08 2008 637 494 0 Yes NA CCI NSG (ABR) NOD/SCID and NSG intravenous, either lateral tail vein 96 Yes (SNP) 54 25 4
yes yes yes yes yes PPTC-ALL-50-D.SNPFinalReports.txt PPTC-ALL-50-D yes PPTCALL50-D-human.bam FALSE PPTC-ALL-50-D-human.bam 85b47c2ba41a6c42c735822b2711c71f PPTC-ALL-50-D-mouse.bam PPTC-ALL-50-R-human.bam 04e36727a10a911cfd653062f2d12fba PPTC-ALL-50-R-mouse.bam yes PPTC-ALL-50-R.human.genes.fpkm_tracking PPTCALL50-D-PDX.bam e4d811039c1209700d9665436dfd590e PPTCALL50-R-PDX.bam 84d74782b91d3d5dec7385d89564fcb2 PPTC-ALL-50-D-human PPTC-ALL-50-D PPTC-ALL-50-R PDX P0034 ALL-50 BCP-ALL PPTCALL50 10-PPTCALL50 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-ALL-50 PPTC-ALL-50-D PPTC-ALL-50-R Yes No Yes No Yes Yes Yes NA Male Diagnosis Diagnosis First 130 months 10.83 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 9/27/06 2006 957 921 4 Yes NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 74 Yes (SNP) 57 53.5 4
yes yes yes yes yes PPTC-AF0O-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0O-XTP1-A-1-0-D yes PPTC-AF0O-XTP1-A-1-0-D-human.bam NA PPTC-AF0O-XTP1-A-1-0-D-human.bam 9557513091f8bfaffc20bb3a639564f2 PPTC-AF0O-XTP1-A-1-0-D-mouse.bam PPTC-AF0O-XTP1-A-1-0-R.human.bam 3f71b113073259112b59292e9faabecd PPTC-AF0O-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0O-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF0O-XTP1-A-1-0-D.PDX.bam PPTC-AF0O-XTP1-A-1-0-R.PDX.bam PPTC-AF0O-XTP1-A-1-0-D-human PPTC-AF0O-XTP1-A-1-0-D PPTC-AF0O-XTP1-A-1-0-R PDX P0035 ALL-51 BCP-ALL PPTCAF0OXTP1A10 10-PPTCAF0OXTP1A10 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-AF0O-XTP1-A-1-0 PPTC-AF0O-XTP1-A-1-0-D PPTC-AF0O-XTP1-A-1-0-R No No Yes No No No No NA Male Diagnosis Diagnosis First 19 months 1.58 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 10/14/03 2003 92 0 0 Yes NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 98 Yes (SNP) 56 63 3
yes yes yes yes yes PPTC-AF0P-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0P-XTP1-A-1-0-D yes PPTC-AF0P-XTP1-A-1-0-D-human.bam NA PPTC-AF0P-XTP1-A-1-0-D-human.bam 0da9b0450c5bf87c574f288b14c5e5b8 PPTC-AF0P-XTP1-A-1-0-D-mouse.bam PPTC-AF0P-XTP1-A-1-0-R.human.bam 87e19493ef0ea41127f7c7909de54132 PPTC-AF0P-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0P-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF0P-XTP1-A-1-0-D.PDX.bam PPTC-AF0P-XTP1-A-1-0-R.PDX.bam PPTC-AF0P-XTP1-A-1-0-D-human PPTC-AF0P-XTP1-A-1-0-D PPTC-AF0P-XTP1-A-1-0-R PDX P0036 ALL-52 BCP-ALL PPTCAF0PXTP1A10 10-PPTCAF0PXTP1A10 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-AF0P-XTP1-A-1-0 PPTC-AF0P-XTP1-A-1-0-D PPTC-AF0P-XTP1-A-1-0-R No No Yes No No No No NA Male Diagnosis Diagnosis First 136 months 11.33 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 7/22/04 2004 5 0 0 Yes NA CCI NOD/SCID and NSG (ABR) NOD/SCID and NSG intravenous, either lateral tail vein 57 Yes (SNP) 117 Not yet passaged 2
yes yes yes yes yes PPTC-AF0Q-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0Q-XTP1-A-1-0-D yes PPTC-AF0Q-XTP1-A-1-0-D-human.bam NA PPTC-AF0Q-XTP1-A-1-0-D-human.bam 866af57788a17f2a739d8cab6962f842 PPTC-AF0Q-XTP1-A-1-0-D-mouse.bam PPTC-AF0Q-XTP1-A-1-0-R.human.bam e029f4d116b763aec8e774e635a4625d PPTC-AF0Q-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0Q-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF0Q-XTP1-A-1-0-D.PDX.bam PPTC-AF0Q-XTP1-A-1-0-R.PDX.bam PPTC-AF0Q-XTP1-A-1-0-D-human PPTC-AF0Q-XTP1-A-1-0-D PPTC-AF0Q-XTP1-A-1-0-R PDX P0037 ALL-53 BCP-ALL PPTCAF0QXTP1A10 10-PPTCAF0QXTP1A10 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-AF0Q-XTP1-A-1-0 PPTC-AF0Q-XTP1-A-1-0-D PPTC-AF0Q-XTP1-A-1-0-R No No Yes No No No No NA Male Diagnosis Diagnosis First 86 months 7.17 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 9/20/02 2002 0 0 Yes NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 137 Yes (SNP) 161 Unknown 3
yes yes yes yes yes PPTC-AF0R-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0R-XTP1-A-1-0-D yes PPTC-AF0R-XTP1-A-1-0-D-human.bam NA PPTC-AF0R-XTP1-A-1-0-D-human.bam 857494fb4d6171d65907d939233e9fd3 PPTC-AF0R-XTP1-A-1-0-D-mouse.bam PPTC-AF0R-XTP1-A-1-0-R.human.bam 68fdf253ea6fbae7b680a6d5278b1f15 PPTC-AF0R-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0R-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF0R-XTP1-A-1-0-D.PDX.bam PPTC-AF0R-XTP1-A-1-0-R.PDX.bam PPTC-AF0R-XTP1-A-1-0-D-human PPTC-AF0R-XTP1-A-1-0-D PPTC-AF0R-XTP1-A-1-0-R PDX P0038 ALL-54 BCP-ALL PPTCAF0RXTP1A10 10-PPTCAF0RXTP1A10 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-AF0R-XTP1-A-1-0 PPTC-AF0R-XTP1-A-1-0-D PPTC-AF0R-XTP1-A-1-0-R No No Yes No No No No NA Male Diagnosis Diagnosis First 88 months 7.33 Unknown Mixed_or_Unknown Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 6/24/03 2003 9 0 0 Yes NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 157 Yes (SNP) 56 51 4
yes yes yes yes yes PPTC-AF0S-XTP1-B-1-0-D-1.SNPFinalReports.txt PPTC-AF0S-XTP1-B-1-0-D yes PPTC-AF0S-XTP1-B-1-0-D-human.bam NA PPTC-AF0S-XTP1-B-1-0-D-human.bam 1deca077c921a47d00806ee94de7276b PPTC-AF0S-XTP1-B-1-0-D-mouse.bam PPTC-AF0S-XTP1-B-1-0-R.human.bam 2d8de52eb34bdd54b7060999b578cad6 PPTC-AF0S-XTP1-B-1-0-R.mouse.bam yes PPTC-AF0S-XTP1-B-1-0-R.human.genes.fpkm_tracking PPTC-AF0S-XTP1-B-1-0-D.PDX.bam PPTC-AF0S-XTP1-B-1-0-R.PDX.bam PPTC-AF0S-XTP1-B-1-0-D-human PPTC-AF0S-XTP1-B-1-0-D PPTC-AF0S-XTP1-B-1-0-R PDX P0039 ALL-55 Ph+-ALL PPTCAF0SXTP1B10 10-PPTCAF0SXTP1B10 NA ALL Ph+-ALL Ph+-ALL Ph+-ALL NA BLLBCRABL1 ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-AF0S-XTP1-B-1-0 PPTC-AF0S-XTP1-B-1-0-D PPTC-AF0S-XTP1-B-1-0-R No No Yes No No No No NA Male Diagnosis Diagnosis First 174 months 14.50 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 12/23/08 2008 292 0 0 Yes NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 146 Yes (SNP) - ref is PDX 4o 68 81 5
yes yes yes yes yes PPTC-ALL-56-D.SNPFinalReports.txt PPTC-ALL-56-D yes PPTCALL56-D-human.bam FALSE PPTC-ALL-56-D-human.bam e9ad6c154af4b605997f80675d7f5966 PPTC-ALL-56-D-mouse.bam PPTC-ALL-56-R-human.bam ebd3b1eded372a841a4768f5be7aaaf9 PPTC-ALL-56-R-mouse.bam yes PPTC-ALL-56-R.human.genes.fpkm_tracking PPTCALL56-D-PDX.bam a831740ea7db10bf213dfe43bd20ba9b PPTCALL56-R-PDX.bam 206ed43e941b5f9a9f987ff4f4086231 PPTC-ALL-56-D-human PPTC-ALL-56-D PPTC-ALL-56-R PDX P0040 ALL-56 Ph+-ALL PPTCALL56 10-PPTCALL56 NA ALL Ph+-ALL Ph+-ALL Ph+-ALL NA BLLBCRABL1 ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-ALL-56 PPTC-ALL-56-D PPTC-ALL-56-R Yes No Yes No Yes Yes Yes NA Male Diagnosis Diagnosis First 120 months 10.00 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 1/5/16 2016 3833 1676 3 Yes NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 176 Yes (SNP) 68 39 4
yes yes yes yes yes PPTC-ALL-57-D.SNPFinalReports.txt PPTC-ALL-57-D yes PPTCALL57-D-human.bam FALSE PPTC-ALL-57-D-human.bam 190b0741dc12126410a8df6a6a40290d PPTC-ALL-57-D-mouse.bam PPTC-ALL-57-R-human.bam 5180db7e8386f1b32aa29960a21d5724 PPTC-ALL-57-R-mouse.bam yes PPTC-ALL-57-R.human.genes.fpkm_tracking PPTCALL57-D-PDX.bam 9b068a899df3fc3c6885d86206bdf81e PPTCALL57-R-PDX.bam fdf2f1191719d0c0bb5fd591d45096cd PPTC-ALL-57-D-human PPTC-ALL-57-D PPTC-ALL-57-R PDX P0041 ALL-57 BCP-ALL PPTCALL57 10-PPTCALL57 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-ALL-57 PPTC-ALL-57-D PPTC-ALL-57-R Yes No Yes No Yes Yes Yes NA Female Diagnosis Diagnosis First 71 months 5.92 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 2/2/09 2009 48 0 1 Yes NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 176 Yes (SNP) 112 44 6
yes yes yes yes yes PPTC-AF0T-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0T-XTP1-A-1-0-D yes PPTC-AF0T-XTP1-A-1-0-D-human.bam NA PPTC-AF0T-XTP1-A-1-0-D-human.bam a9d911bb841d421c13d05244ded77687 PPTC-AF0T-XTP1-A-1-0-D-mouse.bam PPTC-AF0T-XTP1-A-1-0-R.human.bam 93b2959b6e1915e26fc3e8149e4a5044 PPTC-AF0T-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0T-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF0T-XTP1-A-1-0-D.PDX.bam PPTC-AF0T-XTP1-A-1-0-R.PDX.bam PPTC-AF0T-XTP1-A-1-0-D-human PPTC-AF0T-XTP1-A-1-0-D PPTC-AF0T-XTP1-A-1-0-R PDX P0017 ALL-58 BCP-ALL PPTCAF0TXTP1A10 10-PPTCAF0TXTP1A10 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-AF0T-XTP1-A-1-0 PPTC-AF0T-XTP1-A-1-0-D PPTC-AF0T-XTP1-A-1-0-R No No Yes No No No No NA Female Diagnosis Diagnosis First 29 months 2.42 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 2/14/06 2006 749 584 147 Yes Same patient as ALL-123 (rel1) NA CCI NOD/SCID and NSG (ABR) NOD/SCID and NSG intravenous, either lateral tail vein 98 Yes (SNP) 67.5 53 3
yes yes yes yes yes PPTC-ALL-59-D.SNPFinalReports.txt PPTC-ALL-59-D yes PPTCALL59-D-human.bam FALSE PPTC-ALL-59-D-human.bam 630771324b921aaf649303697b702c87 PPTC-ALL-59-D-mouse.bam PPTC-ALL-59-R-human.bam ca6083343bf37473029426eeb08fa6ad PPTC-ALL-59-R-mouse.bam yes PPTC-ALL-59-R.human.genes.fpkm_tracking PPTCALL59-D-PDX.bam c13fb020548aad3e1c77c57f14d4a4c4 PPTCALL59-R-PDX.bam d5ee207e26c5103533061310460da12f PPTC-ALL-59-D-human PPTC-ALL-59-D PPTC-ALL-59-R PDX P0042 ALL-59 BCP-ALL PPTCALL59 10-PPTCALL59 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-ALL-59 PPTC-ALL-59-D PPTC-ALL-59-R Yes No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 162 months 13.50 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 9/19/07 2007 859 713 0 Yes NA CCI NOD/SCID and NSG NOD/SCID and NSG intravenous, either lateral tail vein 279 Yes (SNP) 116 Not yet passaged 2
yes yes yes yes yes PPTC-AF0U-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0U-XTP1-A-1-0-D yes PPTC-AF0U-XTP1-A-1-0-D-human.bam NA PPTC-AF0U-XTP1-A-1-0-D-human.bam 18d41f1be2f48da83230ea1af2d5cc31 PPTC-AF0U-XTP1-A-1-0-D-mouse.bam PPTC-AF0U-XTP1-A-1-0-R.human.bam 53e5487f73031c3013aeff92da556a2e PPTC-AF0U-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0U-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF0U-XTP1-A-1-0-D.PDX.bam PPTC-AF0U-XTP1-A-1-0-R.PDX.bam PPTC-AF0U-XTP1-A-1-0-D-human PPTC-AF0U-XTP1-A-1-0-D PPTC-AF0U-XTP1-A-1-0-R PDX P0043 ALL-60 BCP-ALL PPTCALL60 10-PPTCALL60 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-AF0U-XTP1-A-1-0 PPTC-AF0U-XTP1-A-1-0-D PPTC-AF0U-XTP1-A-1-0-R No No Yes No No No No NA Female Diagnosis Diagnosis First 193 months 16.08 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 1/29/10 2010 1214 1017 0 Yes PPTCAF0UXTP1A10;10-PPTCAF0UXTP1A10 NA CCI NOD/SCID and NSG (ABR) NOD/SCID and NSG intravenous, either lateral tail vein 237 Yes (SNP) 199 Not yet passaged 2
yes yes yes yes yes PPTC-AF0V-XTP1-B-1-0-D-1.SNPFinalReports.txt PPTC-AF0V-XTP1-B-1-0-D yes PPTC-AF0V-XTP1-B-1-0-D-human.bam NA PPTC-AF0V-XTP1-B-1-0-D-human.bam 2226ef001c41bcb0cbbbd98cac2354cb PPTC-AF0V-XTP1-B-1-0-D-mouse.bam PPTC-AF0V-XTP1-B-1-0-R.human.bam 8a057d5324d1f512ba41d6b6c65bea72 PPTC-AF0V-XTP1-B-1-0-R.mouse.bam yes PPTC-AF0V-XTP1-B-1-0-R.human.genes.fpkm_tracking PPTC-AF0V-XTP1-B-1-0-D.PDX.bam PPTC-AF0V-XTP1-B-1-0-R.PDX.bam PPTC-AF0V-XTP1-B-1-0-D-human PPTC-AF0V-XTP1-B-1-0-D PPTC-AF0V-XTP1-B-1-0-R PDX P0021 ALL-61 BCP-ALL PPTCAF0VXTP1B10 10-PPTCAF0VXTP1B10 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-AF0V-XTP1-B-1-0 PPTC-AF0V-XTP1-B-1-0-D PPTC-AF0V-XTP1-B-1-0-R No No Yes No No No No NA Male Relapse Relapse Second 146 months 12.17 Unknown European Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 1/20/06 2006 839 724 724 Yes Same patient as ALL-25 (dx) NA CCI NOD/SCID and NSG (ABR) NOD/SCID and NSG intravenous, either lateral tail vein 65 only 1 sample - in queue? 46 33 3
yes yes yes yes yes PPTC-AF0W-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0W-XTP1-A-1-0-D yes PPTC-AF0W-XTP1-A-1-0-D-human.bam NA PPTC-AF0W-XTP1-A-1-0-D-human.bam 337ee4948bfcd4c9db2954191dafd63d PPTC-AF0W-XTP1-A-1-0-D-mouse.bam PPTC-AF0W-XTP1-A-1-0-R.human.bam 05cf5b9a64f4adbd1256a0e21afa8a02 PPTC-AF0W-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0W-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF0W-XTP1-A-1-0-D.PDX.bam PPTC-AF0W-XTP1-A-1-0-R.PDX.bam PPTC-AF0W-XTP1-A-1-0-D-human PPTC-AF0W-XTP1-A-1-0-D PPTC-AF0W-XTP1-A-1-0-R PDX P0044 ALL-63 BCP-ALL PPTCAF0WXTP1A10 10-PPTCAF0WXTP1A10 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-AF0W-XTP1-A-1-0 PPTC-AF0W-XTP1-A-1-0-D PPTC-AF0W-XTP1-A-1-0-R No No Yes No No No No NA Female Diagnosis Diagnosis First 176 months 14.67 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 12/23/08 2008 0 0 Yes NA CCI NOD/SCID and NSG (ABR) NOD/SCID and NSG intravenous, either lateral tail vein Unknown Yes (SNP) 84 Not yet passaged 2
yes yes yes yes yes PPTC-AF0X-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0X-XTP1-A-1-0-D yes PPTC-AF0X-XTP1-A-1-0-D-human.bam NA PPTC-AF0X-XTP1-A-1-0-D-human.bam f1ec9a9a6f248547526689740bbcc74c PPTC-AF0X-XTP1-A-1-0-D-mouse.bam PPTC-AF0X-XTP1-A-1-0-R.human.bam eec7619343f3b6f09943590af5b2261c PPTC-AF0X-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0X-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF0X-XTP1-A-1-0-D.PDX.bam PPTC-AF0X-XTP1-A-1-0-R.PDX.bam PPTC-AF0X-XTP1-A-1-0-D-human PPTC-AF0X-XTP1-A-1-0-D PPTC-AF0X-XTP1-A-1-0-R PDX P0045 ALL-75 BCP-ALL PPTCAF0XXTP1A10 10-PPTCAF0XXTP1A10 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-AF0X-XTP1-A-1-0 PPTC-AF0X-XTP1-A-1-0-D PPTC-AF0X-XTP1-A-1-0-R No No Yes No No No No NA Female Relapse Relapse Second 11 months 0.92 Unknown European Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA Unknown Unknown Unknown Unknown Unknown Yes NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 40 in queue 40 64 2
yes yes yes yes yes PPTC-AF0Y-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0Y-XTP1-A-1-0-D yes PPTC-AF0Y-XTP1-A-1-0-D-human.bam NA PPTC-AF0Y-XTP1-A-1-0-D-human.bam 41ec29f6355e230e4cf1a8eae67df3b7 PPTC-AF0Y-XTP1-A-1-0-D-mouse.bam PPTC-AF0Y-XTP1-A-1-0-R.human.bam 8a26021c93311daaac2f67652dbd790a PPTC-AF0Y-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0Y-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF0Y-XTP1-A-1-0-D.PDX.bam PPTC-AF0Y-XTP1-A-1-0-R.PDX.bam PPTC-AF0Y-XTP1-A-1-0-D-human PPTC-AF0Y-XTP1-A-1-0-D PPTC-AF0Y-XTP1-A-1-0-R PDX P0046 ALL-80 T-ALL PPTCAF0YXTP1A10 10-PPTCAF0YXTP1A10 NA ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-AF0Y-XTP1-A-1-0 PPTC-AF0Y-XTP1-A-1-0-D PPTC-AF0Y-XTP1-A-1-0-R No No Yes No No No No NA Male Diagnosis Diagnosis First 55 months 4.58 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 4/22/13 2013 565 411 0 Yes Same patient as ALL-81 (rel) NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 49 Yes (SNP) 104 18.5 3
yes yes yes yes yes PPTC-AF0Z-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF0Z-XTP1-A-1-0-D yes PPTC-AF0Z-XTP1-A-1-0-D-human.bam NA PPTC-AF0Z-XTP1-A-1-0-D-human.bam ec983f358be028b2ea24db1a21c4904f PPTC-AF0Z-XTP1-A-1-0-D-mouse.bam PPTC-AF0Z-XTP1-A-1-0-R.human.bam 76c37fe2e8c80ab50e2d3a4679f6a729 PPTC-AF0Z-XTP1-A-1-0-R.mouse.bam yes PPTC-AF0Z-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF0Z-XTP1-A-1-0-D.PDX.bam PPTC-AF0Z-XTP1-A-1-0-R.PDX.bam PPTC-AF0Z-XTP1-A-1-0-D-human PPTC-AF0Z-XTP1-A-1-0-D PPTC-AF0Z-XTP1-A-1-0-R PDX P0046 ALL-81 T-ALL PPTCAF0ZXTP1A10 10-PPTCAF0ZXTP1A10 NA ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-AF0Z-XTP1-A-1-0 PPTC-AF0Z-XTP1-A-1-0-D PPTC-AF0Z-XTP1-A-1-0-R No No Yes No No No No NA Male Relapse Relapse Second 55 months 4.58 Unknown European Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 4/22/13 2013 565 411 411 Yes Same patient as ALL-80 (dx) NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 72 Yes (SNP) 42 30 3
yes yes yes yes yes PPTC-ALL-82-D.SNPFinalReports.txt PPTC-ALL-82-D yes PPTCALL82-D-human.bam FALSE PPTC-ALL-82-D-human.bam 68b2b03e683e3ea12cbe499882c23489 PPTC-ALL-82-D-mouse.bam PPTC-ALL-82-R-human.bam cbb4cff93f023a444f14bcf9699f2fee PPTC-ALL-82-R-mouse.bam yes PPTC-ALL-82-R.human.genes.fpkm_tracking PPTCALL82-D-PDX.bam f1eda4fa8535c806da107ec47ff3ce80 PPTCALL82-R-PDX.bam c543b7492e858f8d84ed6ea3e1498b02 PPTC-ALL-82-D-human PPTC-ALL-82-D PPTC-ALL-82-R PDX P0047 ALL-82 BCP-ALL PPTCALL82 10-PPTCALL82 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-ALL-82 PPTC-ALL-82-D PPTC-ALL-82-R Yes No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 62 months 5.17 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 7/10/08 2008 1067 892 0 Yes Same patient as ALL-83 (rel) NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 200 Yes (SNP) 107 102 3
yes yes yes yes yes PPTC-ALL-83-D.SNPFinalReports.txt PPTC-ALL-83-D yes PPTCALL83-D-human.bam FALSE PPTC-ALL-83-D-human.bam ef1b6af7ebf4a069e255f2b5ab5d2271 PPTC-ALL-83-D-mouse.bam PPTC-ALL-83-R-human.bam 4d61815284dca22179d2a5d7873f2bf6 PPTC-ALL-83-R-mouse.bam yes PPTC-ALL-83-R.human.genes.fpkm_tracking PPTCALL83-D-PDX.bam a67fd2cd115e53dfeea682c85f64dd8c PPTCALL83-R-PDX.bam ebf300bb4fe4808ab1afb5c82f08234a PPTC-ALL-83-D-human PPTC-ALL-83-D PPTC-ALL-83-R PDX P0047 ALL-83 BCP-ALL PPTCALL83 10-PPTCALL83 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-ALL-83 PPTC-ALL-83-D PPTC-ALL-83-R Yes No No No Yes Yes Yes NA Female Relapse Relapse Second 62 months 5.17 Unknown European Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 7/10/08 2008 1067 892 893 Yes Same patient as ALL-82 (dx) NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 104 Yes (SNP) 117 Not yet passaged 2
yes yes yes yes yes PPTC-ALL-84-D.SNPFinalReports.txt PPTC-ALL-84-D yes PPTCALL84-D-human.bam FALSE PPTC-ALL-84-D-human.bam 7ef69c447bf6d459c459fbaaabd4061d PPTC-ALL-84-D-mouse.bam PPTC-ALL-84-R-human.bam 364b18202bc1bf7df3a0a19a84848bf3 PPTC-ALL-84-R-mouse.bam yes PPTC-ALL-84-R.human.genes.fpkm_tracking PPTCALL84-D-PDX.bam 8982a02c8d422fef64409aabdd46243c PPTCALL84-R-PDX.bam db6f93423e1489346684bd5e0ef4228d PPTC-ALL-84-D-human PPTC-ALL-84-D PPTC-ALL-84-R PDX P0048 ALL-84 BCP-ALL PPTCALL84 10-PPTCALL84 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-ALL-84 PPTC-ALL-84-D PPTC-ALL-84-R Yes No No No Yes Yes Yes NA Male Relapse Relapse Second 174 months 14.50 Unknown European Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 11/28/08 2008 917 914 914 Yes NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 145 Yes (SNP) - ref is PDX 1o 74 69 3
yes yes yes yes yes PPTC-ALL-85-D.SNPFinalReports.txt PPTC-ALL-85-D yes PPTCALL85-D-human.bam FALSE PPTC-ALL-85-D-human.bam b361cffc47bed612c924a2abe0a705fe PPTC-ALL-85-D-mouse.bam PPTC-ALL-85-R-human.bam e36b1022a69c685a1ad425d71118f5c7 PPTC-ALL-85-R-mouse.bam yes PPTC-ALL-85-R.human.genes.fpkm_tracking PPTCALL85-D-PDX.bam 7500a109f95fc54c880c7b25601caf6a PPTCALL85-R-PDX.bam 5ead6631e73936d4b2bf41c840cc06a0 PPTC-ALL-85-D-human PPTC-ALL-85-D PPTC-ALL-85-R PDX P0049 ALL-85 T-ALL PPTCALL85 10-PPTCALL85 NA ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-ALL-85 PPTC-ALL-85-D PPTC-ALL-85-R Yes No No No Yes Yes Yes NA Male Relapse Relapse Second 138 months 11.50 Unknown European Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 3/8/11 2011 350 350 350 Yes NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 41 Yes (SNP) 17 20 3
yes yes yes yes yes PPTC-AF10-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF10-XTP1-A-1-0-D yes PPTC-AF10-XTP1-A-1-0-D-human.bam NA PPTC-AF10-XTP1-A-1-0-D-human.bam dafb99b3cf1a68f45e48a2918ca18f40 PPTC-AF10-XTP1-A-1-0-D-mouse.bam PPTC-AF10-XTP1-A-1-0-R.human.bam 043d301151c407b6904fd021d1b70670 PPTC-AF10-XTP1-A-1-0-R.mouse.bam yes PPTC-AF10-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF10-XTP1-A-1-0-D.PDX.bam PPTC-AF10-XTP1-A-1-0-R.PDX.bam PPTC-AF10-XTP1-A-1-0-D-human PPTC-AF10-XTP1-A-1-0-D PPTC-AF10-XTP1-A-1-0-R PDX P0050 ALL-87 BCP-ALL PPTCAF10XTP1A10 10-PPTCAF10XTP1A10 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-AF10-XTP1-A-1-0 PPTC-AF10-XTP1-A-1-0-D PPTC-AF10-XTP1-A-1-0-R No No Yes No No No No NA Male Relapse Relapse Second 28 months 2.33 Unknown European Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 1/29/12 2012 1012 945 951 Yes NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 145 Yes (SNP) - ref is PDX 1o Not yet passaged Not yet passaged 1
yes yes yes yes yes PPTC-ALL-88-D.SNPFinalReports.txt PPTC-ALL-88-D yes PPTCALL88-D-human.bam FALSE PPTC-ALL-88-D-human.bam 5a1cdf24891ffdd7debcf4a3b3ad494c PPTC-ALL-88-D-mouse.bam PPTC-ALL-88-R-human.bam 8d6c577e8f0281b7559b4491bc78777f PPTC-ALL-88-R-mouse.bam yes PPTC-ALL-88-R.human.genes.fpkm_tracking PPTCALL88-D-PDX.bam 45b9a33fc725ebaf0bad5020699216c3 PPTCALL88-R-PDX.bam 09d453dc6b2dca7be90d7c0d7949245c PPTC-ALL-88-D-human PPTC-ALL-88-D PPTC-ALL-88-R PDX P0051 ALL-88 BCP-ALL PPTCALL88 10-PPTCALL88 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-ALL-88 PPTC-ALL-88-D PPTC-ALL-88-R Yes No No No Yes Yes Yes NA Male Relapse Relapse Second 128 months 10.67 Unknown European Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 11/8/07 2007 701 372 372 Yes NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 70 Yes (SNP) - ref is PDX 1o 54 54 3
yes yes yes yes yes PPTC-AF11-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF11-XTP1-A-1-0-D yes PPTC-AF11-XTP1-A-1-0-D-human.bam NA PPTC-AF11-XTP1-A-1-0-D-human.bam 76ef84e5aa867a95ed9c084b978961be PPTC-AF11-XTP1-A-1-0-D-mouse.bam PPTC-AF11-XTP1-A-1-0-R.human.bam 5d2b798eed3ccbb40b643a4b30f7fee6 PPTC-AF11-XTP1-A-1-0-R.mouse.bam yes PPTC-AF11-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF11-XTP1-A-1-0-D.PDX.bam PPTC-AF11-XTP1-A-1-0-R.PDX.bam PPTC-AF11-XTP1-A-1-0-D-human PPTC-AF11-XTP1-A-1-0-D PPTC-AF11-XTP1-A-1-0-R PDX P0028 ALL-90 T-ALL PPTCAF11XTP1A10 10-PPTCAF11XTP1A10 NA ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-AF11-XTP1-A-1-0 PPTC-AF11-XTP1-A-1-0-D PPTC-AF11-XTP1-A-1-0-R No No Yes No No No No NA Male Relapse Relapse Second 133 months 11.08 Unknown European Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 7/9/08 2008 449 294 294 Yes Same patient as ALL-32 (rel) NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 52 Yes (SNP) - ref is PDX 1o 39 Not yet passaged 2
yes yes yes yes yes PPTC-ALL-91-D.SNPFinalReports.txt PPTC-ALL-91-D yes PPTCALL91-D-human.bam FALSE PPTC-ALL-91-D-human.bam 336f2cb83bfe665a789c4dc6bc9b7fba PPTC-ALL-91-D-mouse.bam PPTC-ALL-91-R-human.bam 25bdc0dd863db7f72a25e9c1fdda1aa6 PPTC-ALL-91-R-mouse.bam yes PPTC-ALL-91-R.human.genes.fpkm_tracking PPTCALL91-D-PDX.bam 77fe66b7487f959a05b452cc8ddb392e PPTCALL91-R-PDX.bam 41abe0f13c041b264b8b96aea60850b5 PPTC-ALL-91-D-human PPTC-ALL-91-D PPTC-ALL-91-R PDX P0052 ALL-91 BCP-ALL PPTCALL91 10-PPTCALL91 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-ALL-91 PPTC-ALL-91-D PPTC-ALL-91-R Yes No No No Yes Yes Yes NA Male Relapse Relapse Second 32 months 2.67 Unknown European Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 6/24/12 2012 2404 1022 1022 Yes NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 258 Yes (SNP) 176 Not yet passaged 2
yes yes yes yes yes PPTC-ALL-93-D.SNPFinalReports.txt PPTC-ALL-93-D yes PPTCALL93-D-human.bam FALSE PPTC-ALL-93-D-human.bam e7ba91a46e89a73fb87a1ebadea0ec13 PPTC-ALL-93-D-mouse.bam PPTC-ALL-93-R-human.bam f4712937f9f29e0766be832b8ce4836b PPTC-ALL-93-R-mouse.bam yes PPTC-ALL-93-R.human.genes.fpkm_tracking PPTCALL93-D-PDX.bam 676bd83af2ac9c979bb9d68d07bfb5b8 PPTCALL93-R-PDX.bam 0bc606bbcb8369d65f72053bd9928afb PPTC-ALL-93-D-human PPTC-ALL-93-D PPTC-ALL-93-R PDX P0053 ALL-93 BCP-ALL PPTCALL93 10-PPTCALL93 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-ALL-93 PPTC-ALL-93-D PPTC-ALL-93-R Yes No No No Yes Yes Yes NA Male Relapse Relapse Second 144 months 12.00 Unknown European Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 6/21/11 2011 1393 1183 1183 Yes NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 82 Yes (SNP) - ref is PDX 1o - samples in queue 67 54 4
yes yes yes yes yes PPTC-AF12-XTP1-B-1-0-D-1.SNPFinalReports.txt PPTC-AF12-XTP1-B-1-0-D yes PPTC-AF12-XTP1-B-1-0-D-human.bam NA PPTC-AF12-XTP1-B-1-0-D-human.bam 701e05e0b736610b585af92786d9b095 PPTC-AF12-XTP1-B-1-0-D-mouse.bam PPTC-AF12-XTP1-B-1-0-R.human.bam 93e8c576eda07b6d189f5144f6efd66b PPTC-AF12-XTP1-B-1-0-R.mouse.bam yes PPTC-AF12-XTP1-B-1-0-R.human.genes.fpkm_tracking PPTC-AF12-XTP1-B-1-0-D.PDX.bam PPTC-AF12-XTP1-B-1-0-R.PDX.bam PPTC-AF12-XTP1-B-1-0-D-human PPTC-AF12-XTP1-B-1-0-D PPTC-AF12-XTP1-B-1-0-R PDX P0054 ALL-94 BCP-ALL PPTCAF12XTP1B10 10-PPTCAF12XTP1B10 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-AF12-XTP1-B-1-0 PPTC-AF12-XTP1-B-1-0-D PPTC-AF12-XTP1-B-1-0-R No No Yes No No No No NA Male Relapse Relapse Second 28 months 2.33 Unknown EastAsian Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 11/2/09 2009 1019 895 895 Yes NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 278 Yes (SNP) 153 Not yet passaged 2
yes yes yes yes yes PPTC-AF13-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF13-XTP1-A-1-0-D yes PPTC-AF13-XTP1-A-1-0-D-human.bam NA PPTC-AF13-XTP1-A-1-0-D-human.bam d1d454a626e10fc897b14106e53e3cd3 PPTC-AF13-XTP1-A-1-0-D-mouse.bam PPTC-AF13-XTP1-A-1-0-R.human.bam 46d53ab636a382300ad884951703b54c PPTC-AF13-XTP1-A-1-0-R.mouse.bam yes PPTC-AF13-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF13-XTP1-A-1-0-D.PDX.bam PPTC-AF13-XTP1-A-1-0-R.PDX.bam PPTC-AF13-XTP1-A-1-0-D-human PPTC-AF13-XTP1-A-1-0-D PPTC-AF13-XTP1-A-1-0-R PDX P0055 ALL-95 BCP-ALL PPTCAF13XTP1A10 10-PPTCAF13XTP1A10 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-AF13-XTP1-A-1-0 PPTC-AF13-XTP1-A-1-0-D PPTC-AF13-XTP1-A-1-0-R No No Yes No No No No NA Male Relapse Relapse Second 19 months 1.58 Unknown European Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 11/22/12 2012 1052 860 860 Yes NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 71 Yes (SNP) - ref is PDX 1o 75 Not yet passaged 2
yes yes yes yes yes PPTC-AF14-XTP1-A-1-0-D-1.SNPFinalReports.txt PPTC-AF14-XTP1-A-1-0-D yes PPTC-AF14-XTP1-A-1-0-D-human.bam NA PPTC-AF14-XTP1-A-1-0-D-human.bam a65cd1aec8d4caf22ece6890b9818c4d PPTC-AF14-XTP1-A-1-0-D-mouse.bam PPTC-AF14-XTP1-A-1-0-R.human.bam 9197fdcb9a40c63d0d5d015db293d9c0 PPTC-AF14-XTP1-A-1-0-R.mouse.bam yes PPTC-AF14-XTP1-A-1-0-R.human.genes.fpkm_tracking PPTC-AF14-XTP1-A-1-0-D.PDX.bam PPTC-AF14-XTP1-A-1-0-R.PDX.bam PPTC-AF14-XTP1-A-1-0-D-human PPTC-AF14-XTP1-A-1-0-D PPTC-AF14-XTP1-A-1-0-R PDX P0056 ALL-97 T-ALL PPTCAF14XTP1A10 10-PPTCAF14XTP1A10 NA ALL T-ALL T-ALL T-ALL NA TLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-AF14-XTP1-A-1-0 PPTC-AF14-XTP1-A-1-0-D PPTC-AF14-XTP1-A-1-0-R No No Yes No No No No NA Male Relapse Relapse Second 34 months 2.83 Unknown Mixed_or_Unknown Unknown Bone marrow Not noted Unknown Unknown Prior Chemotherapy NA NA 6/2/10 2010 796 609 601 Yes NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 64 Yes (SNP) 53 Not yet passaged 2
yes yes yes yes yes PPTC-ASPS-KY-D.SNPFinalReports.txt PPTC-ASPS-KY-D yes PPTC-ASPS-KY-D-human.bam NA PPTC-ASPS-KY-D-human.bam ce6c31b6fb1c2548a60306027c760665 PPTC-ASPS-KY-D-mouse.bam PPTC-ASPS-KY-R-human.bam fd5823831a573f2d0a8ab325a89e4f21 PPTC-ASPS-KY-R-mouse.bam yes PPTC-ASPS-KY-R.human.genes.fpkm_tracking PPTCASPSKY-D-PDX.bam 3eea1dfa0e25376c58d0b8f23e341468 PPTCASPSKY-R-PDX.bam 1ff0a5a1a467e42497c93621ed3d4125 PPTC-ASPS-KY-D-human PPTC-ASPS-KY-D PPTC-ASPS-KY-R XG P0057 ASPS-KY Alveolar Soft Part Sarcoma PPTCASPSKY 81-PPTCASPSKY NA ASPS ASPS ASPS ASPS NA ASPS Soft sarcoma Other Sarcoma Soft sarcoma rare rare solid Houghton PPTC-ASPS-KY PPTC-ASPS-KY-D PPTC-ASPS-KY-R No No No No Yes Yes Yes NA Unknown Unknown Unknown Third Unknown Unknown NA Unknown EastAsian Unknown Unknown Not noted Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-BT-27-D-1.SNPFinalReport.txt PPTC-BT-27-D yes TARGET-65-PPT033-60A-01D-human.bam NA TARGET-65-PPT033-60A-01D-human.bam 0ac8c26cf90e6c5118c01f3902a1bb83 TARGET-65-PPT033-60A-01D-mouse.bam PPTC-BT-27-R-human.bam 0895b5954cf528bf6db13dd414c26f45 PPTC-BT-27-R-mouse.bam yes PPTC-BT-27-R.human.genes.fpkm_tracking TARGET-65-PPT033-60A-01D.PDX.bam PPTCBT27-R-PDX.bam 42697a95d09307747d2a27fc498cba97 TARGET-65-PPT033-60A-01D-human TARGET-65-PPT033-60A-01D TARGET-65-PPT033-60A-01R XG P0058 BT-27 PNET PPTCBT27 65-PPTCBT27 TARGET-65-PPT033 PNET CNS embryonal NOS Other CNS Embryonal CNS embryonal NOS CNS embryonal NOS EMBT CNS embryonal tumor embryonal embryonal brain embryonal brain Houghton PPTC-BT-27 PPTC-BT-27-D PPTC-BT-27-R No Yes No No Yes Yes No Unknown Unknown Unknown Third Unknown Unknown NA Unknown European Unknown Unknown Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes C13 NCH n/a NA
yes yes yes yes yes PPTC-BT-29-D-1.SNPFinalReport.txt PPTC-BT-29-D yes TARGET-62-PPT001-60A-01D-human.bam NA TARGET-62-PPT001-60A-01D-human.bam 032630a18ba5a0c4604502986109a77a TARGET-62-PPT001-60A-01D-mouse.bam PPTC-BT-29-R-human.bam a8dc72ab8247d10fbc234eb60ca0e4ac PPTC-BT-29-R-mouse.bam yes PPTC-BT-29-R.human.genes.fpkm_tracking TARGET-62-PPT001-60A-01D.PDX.bam PPTCBT29-R-PDX.bam 569f7a3b278c6ae303a903418de9169e TARGET-62-PPT001-60A-01D-human TARGET-62-PPT001-60A-01D TARGET-62-PPT001-60A-01R XG P0059 BT-29 Rhabdoid tumor PPTCBT29 62-PPTCBT29 TARGET-62-PPT001 ATRT ATRT ATRT ATRT-MYC MYC ATRT CNS embryonal tumor ATRT embryonal brain rhabdoid brain Houghton PPTC-BT-29 PPTC-BT-29-D PPTC-BT-29-R No Yes Yes No Yes Yes No Kidney/Rhabdoid Male Diagnosis Diagnosis First 2 Unknown NA European European Frontal Lobe Frontal Lobe MYC by RNA Unknown Unknown No Prior Tx WT NA NA Unknown Unknown Unknown Unknown Unknown Yes A1 NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-CHLA258-D-1.SNPFinalReports.txt PPTC-CHLA258-D yes TARGET-41-PPT039-61A-01D-human.bam NA TARGET-41-PPT039-61A-01D-human.bam TARGET-41-PPT039-61A-01D-mouse.bam PPTC-CHLA258-R-human.bam 9ed04f1c480928fadf5f336a7b8da7d7 PPTC-CHLA258-R-mouse.bam yes PPTC-CHLA258-R.human.genes.fpkm_tracking TARGET-41-PPT039-61A-01D.PDX.bam PPTCCHLA258-R-PDX.bam 8f1eac9780c780e895b20807d4bd688e TARGET-41-PPT039-61A-01D-human TARGET-41-PPT039-61A-01D TARGET-41-PPT039-61A-01R XG P0060 CHLA-258 Ewing, PNET Ewings PPTCCHLA258 41-PPTCCHLA258 TARGET-41-PPT039 Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma NA ES Bone sarcoma Ewing Sarcoma bone sarcoma sarcoma ewing solid Houghton PPTC-CHLA258 PPTC-CHLA258-D PPTC-CHLA258-R No Yes Yes No Yes Yes No Sarcoma Female Relapse Relapse Second 14 years 14 Hispanic or Latino SouthAsianOrHispanic Unknown Lung EWS/FLI-1 translocation Unknown Unknown Vinc+Dox+ cyclo, VP16+ifos; Ifos+CBDCA +ETOP NA NA Unknown Unknown Unknown Unknown Unknown Yes B12, H10 NCH, UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-CHLA79-D-1.SNPFinalReports.txt PPTC-CHLA79-D yes TARGET-30-PPT063-61A-01D.hybrid_hg19.realigned.recal.bam NA TARGET-30-PPT063-61A-01D.hybrid_hg19.realigned.recal.bam TARGET-30-PPT063-61A-01D.hybrid_mm10.realigned.recal.bam PPTC-CHLA79-R-human.bam fd1d728ef0bd55816e5fed26bfc774c1 PPTC-CHLA79-R-mouse.bam yes PPTC-CHLA79-R.human.genes.fpkm_tracking TARGET-30-PPT063-61A-01D.PDX.bam PPTCCHLA79-R-PDX.bam de780909d6f4c5029d7afb566e08060f TARGET-30-PPT063-61A-01D-human TARGET-30-PPT063-61A-01D TARGET-30-PPT063-61A-01R XG P0061 CHLA-79 Neuroblastoma PPTCCHLA79 30-PPTCCHLANBL79 TARGET-30-PPT063 Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-CHLA79 PPTC-CHLA79-D PPTC-CHLA79-R No Yes Yes No Yes Yes No Neuroblastoma Female Progressing Disease Relapse Third 24 months 2 Unknown European Unknown Unknown Non-MYCN Amp Stage 4 High Unknown Cisplatin, cyclophosphamide, doxorubicin, etoposide, melphalan, total body irradiation WT non-amp WT NA Unknown Unknown Unknown Unknown Unknown Yes E5 CHOP NSG CB17-SCID subcutaneous; left flank Negative CRL Negative 2 < 3 cm^3 23 Unknown 12 yes
yes yes yes yes yes PPTC-COG-N-415x-D.SNPFinalReports.txt PPTC-COG-N-415x-D yes PPTCCOGN415x-D-human.bam FALSE PPTC-COG-N-415x-D-human.bam 100ced833168760b947628ec0354fb71 PPTC-COG-N-415x-D-mouse.bam PPTC-COG-N-415x-R-human.bam 6639000beb07d4004ca4202c9e3934e2 PPTC-COG-N-415x-R-mouse.bam yes PPTC-COG-N-415x-R.human.genes.fpkm_tracking PPTCCOGN415x-D-PDX.bam ef8f814070125f5726247d8c3ac90fbf PPTCCOGN415x-R-PDX.bam fafb98352f1da0e801a9401ad2cd0636 PPTC-COG-N-415x-D-human PPTC-COG-N-415x-D PPTC-COG-N-415x-R PDX P0062 COG-N-415x Neuroblastoma PPTCCOGN415x 30-PPTCCOGNBL415x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-415x PPTC-COG-N-415x-D PPTC-COG-N-415x-R Yes No No No Yes Yes Yes NA Female Progressing Disease Relapse Third 24 months 1.4 Unknown European Adrenal gland, NOS Suprarenal gland Adrenal, NOS post mortem blood MYCN Amp Stage 4 High ANBL00B1 (20090825), ANBL0532 (20090828) Unknown Non-functional amp F1174L NA 4/22/10 2010 242 226 242 Yes NA TTHSC NSG CB17-SCID subcutaneous 136 no Negative CRL Negative 6 < 3 cm^3 Unknown Unknown 5 yes
yes yes yes yes yes PPTC-COG-N-421x-D.SNPFinalReports.txt PPTC-COG-N-421x-D yes PPTCCOGN421x-D-human.bam FALSE PPTC-COG-N-421x-D-human.bam 0974f726a02c65eeb0d6921ade152afc PPTC-COG-N-421x-D-mouse.bam PPTC-COG-N-421x-R-human.bam 3da667993c6ba2f9c79e8bcabb5dc2ec PPTC-COG-N-421x-R-mouse.bam yes PPTC-COG-N-421x-R.human.genes.fpkm_tracking PPTCCOGN421x-D-PDX.bam 4900c253c55a6aa2a81d18680885caae PPTCCOGN421x-R-PDX.bam 0a81a838d8970486e12d402bbf93fe62 PPTC-COG-N-421x-D-human PPTC-COG-N-421x-D PPTC-COG-N-421x-R PDX P0063 COG-N-421x Neuroblastoma PPTCCOGN421x 30-PPTCCOGNBL421x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-421x PPTC-COG-N-421x-D PPTC-COG-N-421x-R Yes No No No Yes Yes Yes NA Male Relapse Relapse Second Unknown Unknown 2.73 Unknown European Adrenal gland, NOS Suprarenal gland Adrenal, NOS post mortem blood MYCN Amp Stage 4 AB9804 (20040323), ANBL00B1 (20040326), B947 (20040329) Unknown WT amp WT NA 5/18/11 2011 2619 2078 2619 Yes NA TTHSC NSG CB17-SCID subcutaneous 97 no Negative CRL Negative <2 cm^3 Unknown Unknown 7 yes
yes yes yes yes yes PPTC-COG-N-424x-D.SNPFinalReports.txt PPTC-COG-N-424x-D yes PPTCCOGN424x-D-human.bam FALSE PPTC-COG-N-424x-D-human.bam 43c6e1d9b4ceabadc1f4ddfa7bc9712d PPTC-COG-N-424x-D-mouse.bam PPTC-COG-N-424x-R-human.bam 4e91980259cd713a0591e9631fcb11cd PPTC-COG-N-424x-R-mouse.bam yes PPTC-COG-N-424x-R.human.genes.fpkm_tracking PPTCCOGN424x-D-PDX.bam 96de6758ed032c9a5433413ce75d75d9 PPTCCOGN424x-R-PDX.bam 744a4a9f767021ecf6a200d1ba23996a PPTC-COG-N-424x-D-human PPTC-COG-N-424x-D PPTC-COG-N-424x-R PDX P0064 COG-N-424x Neuroblastoma PPTCCOGN424x 30-PPTCCOGNBL424x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-424x PPTC-COG-N-424x-D PPTC-COG-N-424x-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First Unknown Unknown 0.5 Unknown European Adrenal gland, NOS Suprarenal gland Adrenal, NOS tumor MYCN Amp Stage 4 ANBL00B1 (20110624), ANBL0032 (20120511) No Prior Tx WT amp WT NA Unknown Unknown 1989 1989 1 Yes NA TTHSC NSG CB17-SCID subcutaneous 105 yes Negative CRL Negative 2 < 3 cm^3 Unknown Unknown 8 no
yes yes yes yes yes PPTC-COG-N-426x-Felix-PDX-D.SNPFinalReports.txt PPTC-COG-N-426x-Felix-PDX-D yes PPTCCOGN426xFelixPDX-D-human.bam FALSE PPTC-COG-N-426x-Felix-PDX-D-human.bam d1a70ee6630276ca90b17adcbbcccb76 PPTC-COG-N-426x-Felix-PDX-D-mouse.bam PPTC-COG-N-426x-Felix-PDX-R-human.bam f4c12b7a380bbb3a4883341bf55c66c2 PPTC-COG-N-426x-Felix-PDX-R-mouse.bam yes PPTC-COG-N-426x-Felix-PDX-R.human.genes.fpkm_tracking PPTCCOGN426xFelixPDX-D-PDX.bam b0a4195c054c4fd24a0413ff39eebc2b PPTCCOGN426xFelixPDX-R-PDX.bam 48a1f65026c01fad965cc1d39b857ad0 PPTC-COG-N-426x-Felix-PDX-D-human PPTC-COG-N-426x-Felix-PDX-D PPTC-COG-N-426x-Felix-PDX-R PDX P0065 COG-N-426x-Felix-PDX Neuroblastoma PPTCCOGN426xFelixPDX 30-PPTCCOGNBL426xFelixPDX NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-426x-Felix-PDX PPTC-COG-N-426x-Felix-PDX-D PPTC-COG-N-426x-Felix-PDX-R Yes No No No Yes Yes Yes NA Male Relapse Relapse Second Unknown Unknown 4 Unknown European Unknown post mortem blood Non-MYCN Amp Stage 4 ADVL0921 multiple rounds of chemotherapy, radiation, MIBG, immunotherapy; MLN-8237, irinotecan, temozolomide WT non-amp F1245C NA 8/23/11 2011 Unknown Unknown Unknown Yes NA TTHSC NSG CB17-SCID subcutaneous 122 no Negative CRL Negative 9 < 3 cm^3 21 Unknown 3 yes
yes yes yes yes yes PPTC-COG-N-440x-D.SNPFinalReports.txt PPTC-COG-N-440x-D yes PPTCCOGN440x-D-human.bam FALSE PPTC-COG-N-440x-D-human.bam 23d7162bd5619c61d4af70ae2201c39f PPTC-COG-N-440x-D-mouse.bam PPTC-COG-N-440x-R-human.bam 35d75956c782e64156bb6f4873b791e3 PPTC-COG-N-440x-R-mouse.bam yes PPTC-COG-N-440x-R.human.genes.fpkm_tracking PPTCCOGN440x-D-PDX.bam 1d8d6da56b65cc020f48924a05d2d2a8 PPTCCOGN440x-R-PDX.bam bed67107d39e1c45c3a66a0ebd89439d PPTC-COG-N-440x-D-human PPTC-COG-N-440x-D PPTC-COG-N-440x-R PDX P0066 COG-N-440x Neuroblastoma PPTCCOGN440x 30-PPTCCOGNBL440x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-440x PPTC-COG-N-440x-D PPTC-COG-N-440x-R Yes No No No Yes Yes Yes NA Female Relapse Relapse Second Unknown Unknown 0.93 Unknown European Adrenal gland, NOS Suprarenal gland Adrenal, NOS post mortem blood MYCN Amp Stage 4 ANBL0531 (20110509), ANBL00B1 (20110509), ANBL0532 (20110526) Unknown WT amp WT NA 12/13/11 2011 222 172 222 Yes NA TTHSC NSG CB17-SCID subcutaneous or intravenous tail vein 62 or 145 no Negative CRL Negative < 2.0 cm^3 Unknown Unknown 4 yes
yes yes yes yes yes PPTC-COG-N-452x-D.SNPFinalReports.txt PPTC-COG-N-452x-D yes PPTCCOGN452x-D-human.bam FALSE PPTC-COG-N-452x-D-human.bam cfc2407dcf9cba10814f7e5fcb2aa7ce PPTC-COG-N-452x-D-mouse.bam PPTC-COG-N-452x-R-human.bam ef67ad46d822f27f3f2472f7104fb179 PPTC-COG-N-452x-R-mouse.bam yes PPTC-COG-N-452x-R.human.genes.fpkm_tracking PPTCCOGN452x-D-PDX.bam a7fb7c3cb1784ab105c0bfa1cbdb539c PPTCCOGN452x-R-PDX.bam f5efa76c61661c8ad8f84d6a04bc0031 PPTC-COG-N-452x-D-human PPTC-COG-N-452x-D PPTC-COG-N-452x-R PDX P0067 COG-N-452x Neuroblastoma PPTCCOGN452x 30-PPTCCOGNBL452x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-452x PPTC-COG-N-452x-D PPTC-COG-N-452x-R Yes No No No Yes Yes Yes NA Male Relapse Relapse Second Unknown Unknown 1.4 Unknown European Adrenal gland, NOS Suprarenal gland Adrenal, NOS post mortem blood MYCN Amp Stage 4 ANBL00B1 (20080703), ACCL05C1 (20080813) Unknown WT amp F1174L NA 3/12/12 2012 1350 444 1350 Yes same patient as COG-N-453x NA TTHSC NSG CB17-SCID subcutaneous 100 yes Negative CRL Negative 1.5 - 3.0 cm^3 42 (from cryoslice) Unknown 9 yes
yes yes yes yes yes PPTC-COG-N-453x-D.SNPFinalReports.txt PPTC-COG-N-453x-D yes PPTCCOGN453x-D-human.bam FALSE PPTC-COG-N-453x-D-human.bam c28e2ef754dc1ac0963c1d8c5e100f1f PPTC-COG-N-453x-D-mouse.bam PPTC-COG-N-453x-R-human.bam 2b522c99bc971a50f1585904a4f01aca PPTC-COG-N-453x-R-mouse.bam yes PPTC-COG-N-453x-R.human.genes.fpkm_tracking PPTCCOGN453x-D-PDX.bam 2b5264dacc26979acd55ca10fb48c6cd PPTCCOGN453x-R-PDX.bam bb5774beaf6c953877e2dfc38b959478 PPTC-COG-N-453x-D-human PPTC-COG-N-453x-D PPTC-COG-N-453x-R PDX P0067 COG-N-453x Neuroblastoma PPTCCOGN453x 30-PPTCCOGNBL453x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-453x PPTC-COG-N-453x-D PPTC-COG-N-453x-R Yes No No No Yes Yes Yes NA Male Relapse Relapse Second Unknown Unknown 1.4 Unknown European Adrenal gland, NOS Suprarenal gland Adrenal, NOS post mortem liver tumor MYCN Amp Stage 4 ANBL00B1 (20080703), ACCL05C1 (20080813) Unknown WT amp F1174L NA 3/12/12 2012 1350 444 1350 Yes same patient as COG-N-452x NA TTHSC NSG CB17-SCID subcutaneous 98 no Negative CRL Negative 5 < 3 cm^3 Unknown 63 3 yes
yes yes yes yes yes PPTC-COG-N-471x-D.SNPFinalReports.txt PPTC-COG-N-471x-D yes PPTCCOGN471x-D-human.bam FALSE PPTC-COG-N-471x-D-human.bam 35f40a0fce7031b5f6169ccba238540b PPTC-COG-N-471x-D-mouse.bam PPTC-COG-N-471x-R-human.bam 8b3daa051e20ae330d50c7d9d00a654a PPTC-COG-N-471x-R-mouse.bam yes PPTC-COG-N-471x-R.human.genes.fpkm_tracking PPTCCOGN471x-D-PDX.bam 7f6973daaad2d9f91edc9e8bb5a25ddd PPTCCOGN471x-R-PDX.bam a4f22e8f119428aa3d92e1cddf16c38a PPTC-COG-N-471x-D-human PPTC-COG-N-471x-D PPTC-COG-N-471x-R PDX P0068 COG-N-471x Neuroblastoma PPTCCOGN471x 30-PPTCCOGNBL471x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-471x PPTC-COG-N-471x-D PPTC-COG-N-471x-R Yes No No No Yes Yes Yes NA Female Relapse Relapse Second Unknown Unknown 2.58 Unknown SouthAsianOrHispanic Adrenal gland, NOS Suprarenal gland Adrenal, NOS post mortem blood MYCN Amp by pathology & RNA, not by CN Stage 4 ANBL00B1 (20110916), ANBL0532 (20110921), ACCL0934 (20120426) Unknown WT amp WT NA 8/8/12 2012 327 312 327 Yes NA TTHSC NSG CB17-SCID subcutaneous 131 no Negative CRL Negative 2 < 3 cm^3 Unknown Unknown 5 yes
yes yes yes yes yes PPTC-COG-N-480x-D.SNPFinalReports.txt PPTC-COG-N-480x-D yes PPTCCOGN480x-D-human.bam FALSE PPTC-COG-N-480x-D-human.bam 24e7f848a68adb7a2307fe10ecc41fd7 PPTC-COG-N-480x-D-mouse.bam PPTC-COG-N-480x-R-human.bam 5f3a986e4f8a567e17eb6abee905ff8b PPTC-COG-N-480x-R-mouse.bam yes PPTC-COG-N-480x-R.human.genes.fpkm_tracking PPTCCOGN480x-D-PDX.bam 4eaba586152862d058d627c38d0ebdad PPTCCOGN480x-R-PDX.bam abc28a48cf8c44d9cc3e305e592f1e41 PPTC-COG-N-480x-D-human PPTC-COG-N-480x-D PPTC-COG-N-480x-R PDX P0069 COG-N-480x Neuroblastoma PPTCCOGN480x 30-PPTCCOGNBL480x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-480x PPTC-COG-N-480x-D PPTC-COG-N-480x-R Yes No No No Yes Yes Yes NA Male Diagnosis Diagnosis First Unknown Unknown 0.95 Unknown European Adrenal gland, NOS Suprarenal gland Adrenal, NOS bone marrow MYCN Amp Stage 4 ANBL00B1 (20130424), ANBL0032 (20131205) No Prior Tx WT amp WT NA 5/23/14 2014 394 394 1 Yes NA TTHSC NSG CB17-SCID subcutaneous (originally intravenous tail vein) 161 yes Negative CRL Negative 1.3 - 1.5cm^3 Unknown Unknown 3 yes
yes yes yes yes yes PPTC-COG-N-496x-D.SNPFinalReports.txt PPTC-COG-N-496x-D yes PPTCCOGN496x-D-human.bam FALSE PPTC-COG-N-496x-D-human.bam a31e889da128260a78b7c4d543f36d03 PPTC-COG-N-496x-D-mouse.bam PPTC-COG-N-496x-R-human.bam b128e065301cafc8bffd46a4dc3caf62 PPTC-COG-N-496x-R-mouse.bam yes PPTC-COG-N-496x-R.human.genes.fpkm_tracking PPTCCOGN496x-D-PDX.bam d166242bba33f76c1d8046be8d3f32b8 PPTCCOGN496x-R-PDX.bam 245cb79795934af665f428247bed963f PPTC-COG-N-496x-D-human PPTC-COG-N-496x-D PPTC-COG-N-496x-R PDX P0070 COG-N-496x Neuroblastoma PPTCCOGN496x 30-PPTCCOGNBL496x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-496x PPTC-COG-N-496x-D PPTC-COG-N-496x-R Yes No No No Yes Yes Yes NA Female Diagnosis Diagnosis First Unknown Unknown 3.2 Unknown European Unknown bone marrow MYCN Amp Stage 4 Unknown No Prior Tx R342* amp WT NA Unknown Unknown Unknown Unknown 1 Yes NA TTHSC NSG CB17-SCID subcutaneous 41 yes Negative CRL Negative 1.5 - 2.0 cm^3 Unknown Unknown 3 yes
yes yes yes yes yes PPTC-COG-N-519x-D.SNPFinalReports.txt PPTC-COG-N-519x-D yes PPTCCOGN519x-D-human.bam FALSE PPTC-COG-N-519x-D-human.bam e2b5446aeb2db501cb6d083f0a023b15 PPTC-COG-N-519x-D-mouse.bam PPTC-COG-N-519x-R-human.bam 292eef546a0052a0063f064b6b6d2f58 PPTC-COG-N-519x-R-mouse.bam yes PPTC-COG-N-519x-R.human.genes.fpkm_tracking PPTCCOGN519x-D-PDX.bam 9f7c63f28a27bad99b7109c18812d58b PPTCCOGN519x-R-PDX.bam 32ebfa85fcb921d3d997e36a03792e31 PPTC-COG-N-519x-D-human PPTC-COG-N-519x-D PPTC-COG-N-519x-R PDX P0071 COG-N-519x Neuroblastoma PPTCCOGN519x 30-PPTCCOGNBL519x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-519x PPTC-COG-N-519x-D PPTC-COG-N-519x-R Yes No No No Yes Yes Yes NA Male Relapse Relapse Second Unknown Unknown 2 Unknown European C74.9: Adrenal gland, NOS post mortem blood MYCN Amp Stage 4 ANBL00B1 Unknown G245S amp WT NA 1/8/14 2014 996 Unknown 996 Yes NA TTHSC NSG CB17-SCID subcutaneous 62 yes Negative CRL Negative >1.5 cm^3 Unknown 42 5 yes
yes yes yes yes yes PPTC-COG-N-549x-D.SNPFinalReports.txt PPTC-COG-N-549x-D yes PPTCCOGN549x-D-human.bam FALSE PPTC-COG-N-549x-D-human.bam af6ad75440a7ceacf07377a18f310f51 PPTC-COG-N-549x-D-mouse.bam PPTC-COG-N-549x-R-human.bam e8ede67bfd67d6e691fa665596ebed26 PPTC-COG-N-549x-R-mouse.bam yes PPTC-COG-N-549x-R.human.genes.fpkm_tracking PPTCCOGN549x-D-PDX.bam 5c0d560f57d98de6456ab5a3ace0687f PPTCCOGN549x-R-PDX.bam 164e4b9a9c4e3c2420596343315fe845 PPTC-COG-N-549x-D-human PPTC-COG-N-549x-D PPTC-COG-N-549x-R PDX P0072 COG-N-549x Neuroblastoma PPTCCOGN549x 30-PPTCCOGNBL549x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-549x PPTC-COG-N-549x-D PPTC-COG-N-549x-R Yes No No No Yes Yes Yes NA Male Progressing Disease Relapse Third Unknown Unknown 1.2 Unknown European Abdomen, NOS Abdominal wall, NOS Intra-abdominal site, NOS tumor Non-MYCN Amp Stage 4 ANBL00B1 (20140401), ANBL09P1 (20140411) Unknown WT non-amp F1174L NA 4/19/15 2015 383 242 241 Yes NA TTHSC NSG CB17-SCID subcutaneous 69 yes Negative CRL Negative 0.7-1.8 cm^3 Unknown Unknown 3 yes
yes yes yes yes yes PPTC-COG-N-557x-D.SNPFinalReports.txt PPTC-COG-N-557x-D yes PPTCCOGN557x-D-human.bam FALSE PPTC-COG-N-557x-D-human.bam c2ce2a2c77235456822af087594caca1 PPTC-COG-N-557x-D-mouse.bam PPTC-COG-N-557x-R-human.bam 2516faf7724cce808b25a59145f9f214 PPTC-COG-N-557x-R-mouse.bam yes PPTC-COG-N-557x-R.human.genes.fpkm_tracking PPTCCOGN557x-D-PDX.bam b074ce954d85f15dcee49fdf0c1310a8 PPTCCOGN557x-R-PDX.bam 2e5597533ce2d981346bce538b519329 PPTC-COG-N-557x-D-human PPTC-COG-N-557x-D PPTC-COG-N-557x-R PDX P0073 COG-N-557x Neuroblastoma PPTCCOGN557x 30-PPTCCOGNBL557x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-557x PPTC-COG-N-557x-D PPTC-COG-N-557x-R Yes No No No Yes Yes Yes NA Male Diagnosis Diagnosis First Unknown Unknown 2.68 Unknown Mixed_or_Unknown Abdomen, NOS Abdominal wall, NOS Intra-abdominal site, NOS tumor MYCN Amp by pathology & RNA, not by CN Stage 4 ANBL00B1 (20141230) No Prior Tx WT amp F1245L NA 9/6/16 2016 617 418 1 Yes NA TTHSC NSG CB17-SCID subcutaneous 84 yes Negative CRL Negative 1.5 cm^3 Unknown Unknown 3 yes
yes yes yes yes yes PPTC-COG-N-560x-D.SNPFinalReports.txt PPTC-COG-N-560x-D yes PPTCCOGN560x-D-human.bam FALSE PPTC-COG-N-560x-D-human.bam c71cffcdc3b286cc2cb11b3ece682ba3 PPTC-COG-N-560x-D-mouse.bam PPTC-COG-N-560x-R-human.bam c376f7263f4837966e1cbe3940dda4e3 PPTC-COG-N-560x-R-mouse.bam yes PPTC-COG-N-560x-R.human.genes.fpkm_tracking PPTCCOGN560x-D-PDX.bam e5fe04d4c6410ef76254e1b73fa623cf PPTCCOGN560x-R-PDX.bam e7d1c5caea30d99e77d9dbfb921e5b52 PPTC-COG-N-560x-D-human PPTC-COG-N-560x-D PPTC-COG-N-560x-R PDX P0074 COG-N-560x Neuroblastoma PPTCCOGN560x 30-PPTCCOGNBL560x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-560x PPTC-COG-N-560x-D PPTC-COG-N-560x-R No No No No Yes Yes Yes NA Female Diagnosis Diagnosis First Unknown Unknown 1 Unknown European Abdomen, NOS Abdominal wall, NOS Intra-abdominal site, NOS tumor MYCN Amp Stage 4 ANBL00B1 (20141030) No Prior Tx WT amp WT NA 7/25/15 2015 268 Unknown 1 Yes NA TTHSC NSG CB17-SCID subcutaneous 123 no Negative CRL Negative 1.5 cm^3 56 Unknown 2 no
yes yes yes yes yes PPTC-COG-N-561x-D.SNPFinalReports.txt PPTC-COG-N-561x-D yes PPTCCOGN561x-D-human.bam FALSE PPTC-COG-N-561x-D-human.bam f3cdb59d4f2c6dc2e5e6f650142c777a PPTC-COG-N-561x-D-mouse.bam PPTC-COG-N-561x-R-human.bam 47a7c753a44f4584e382c55ad831e2c9 PPTC-COG-N-561x-R-mouse.bam yes PPTC-COG-N-561x-R.human.genes.fpkm_tracking PPTCCOGN561x-D-PDX.bam 8258e3dfc299ee71b1185951527f4590 PPTCCOGN561x-R-PDX.bam b594dc076e698ef3669f74a092542bca PPTC-COG-N-561x-D-human PPTC-COG-N-561x-D PPTC-COG-N-561x-R PDX P0075 COG-N-561x Neuroblastoma PPTCCOGN561x 30-PPTCCOGNBL561x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-561x PPTC-COG-N-561x-D PPTC-COG-N-561x-R Yes No No No Yes Yes Yes NA Female Relapse Relapse Second Unknown Unknown 1.6 Unknown European C48.0 Retroperitoneum post mortem blood MYCN Amp Stage 4 ANBL00B1 Unknown WT amp F1245I NA 2/7/15 2015 406 Unknown 406 Yes NA TTHSC NSG CB17-SCID subcutaneous 65 yes Negative CRL Negative 1.5-2.0 cm^3 Unknown Unknown 4 yes
yes yes yes yes yes PPTC-COG-N-564x-D.SNPFinalReports.txt PPTC-COG-N-564x-D yes PPTCCOGN564x-D-human.bam FALSE PPTC-COG-N-564x-D-human.bam 96b275496bf637a79e330cae52e4f78b PPTC-COG-N-564x-D-mouse.bam PPTC-COG-N-564x-R-human.bam 9987ec254615df5228ac60709f83bf72 PPTC-COG-N-564x-R-mouse.bam yes PPTC-COG-N-564x-R.human.genes.fpkm_tracking PPTCCOGN564x-D-PDX.bam 32e0af5e91e443f9faaf11c0820321c2 PPTCCOGN564x-R-PDX.bam aa7d6aa5b28622aefced172ad8ca118d PPTC-COG-N-564x-D-human PPTC-COG-N-564x-D PPTC-COG-N-564x-R PDX P0076 COG-N-564x Neuroblastoma PPTCCOGN564x 30-PPTCCOGNBL564x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-564x PPTC-COG-N-564x-D PPTC-COG-N-564x-R Yes No No No Yes Yes Yes NA Female Relapse Relapse Second Unknown Unknown NA Unknown European Unknown post mortem blood MYCN Amp Stage 4 Unknown Unknown WT amp WT NA 6/19/15 2015 Unknown Unknown Unknown Yes NA TTHSC NSG CB17-SCID subcutaneous 53 yes Negative CRL Negative 1.4-2.5 cm^3 Unknown Unknown 5 yes
yes yes yes yes yes COG-N-589x-D1.SNPFinalReports.txt COG-N-589x-D1 yes COG-N-589x-D1-human.bam TRUE COG-N-589x-D1-human.bam 489d492e4f1cc6a0a58d8437d9c5d787 COG-N-589x-D1-mouse.bam PPTC-COG-N-589x-R-human.bam e66db032b9e35421409edaa7c68120ee PPTC-COG-N-589x-R-mouse.bam yes PPTC-COG-N-589x-R.human.genes.fpkm_tracking PPTCCOGN589x-D-PDX.bam b702aa29911ff557e251c0d51c5616f0 COG-N-589x-R.PDX.bam COG-N-589x-D1-human COG-N-589x-D1 COG-N-589x-R PDX P0077 COG-N-589x Neuroblastoma PPTCCOGN589x 30-PPTCCOGNBL589x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-589x PPTC-COG-N-589x-D PPTC-COG-N-589x-R No No No No No No Yes NA Female Diagnosis Diagnosis First Unknown Unknown 4.94 Unknown African Retroperitoneum Periadrenal tissue Perinephric tissue Per tumor Non-MYCN Amp Stage 4 ANBL00B1 (20150814) No Prior Tx WT amp WT NA 3/5/16 2016 204 204 1 Yes NA TTHSC NSG CB17-SCID subcutaneous 152 yes Negative CRL Negative RNA - p3 DNA - p2 1.5cm^3 1.4-2.5 cm^4 3 no
yes yes yes yes yes COG-N-590x-D.SNPFinalReports.txt COG-N-590x-D yes PPTCCOGN590x-D-human.bam FALSE COG-N-590x-D-human.bam 7cbd37c2aeadbd08f4300bde1895059c COG-N-590x-D-mouse.bam PPTC-COG-N-590x-R-human.bam 87a31cca351bc19f4f1db645b0a530c4 PPTC-COG-N-590x-R-mouse.bam yes PPTC-COG-N-590x-R.human.genes.fpkm_tracking PPTCCOGN590x-D-PDX.bam be85c3dec8ba274ec3c9e209ba1399d4 PPTCCOGN590x-R-PDX.bam PPTC-COG-N-590x-D-human PPTC-COG-N-590x-D PPTC-COG-N-590x-R PDX P0078 COG-N-590x Neuroblastoma PPTCCOGN590x 30-PPTCCOGNBL590x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-590x PPTC-COG-N-590x-D PPTC-COG-N-590x-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First Unknown Unknown 4.63 Unknown European Cortex of adrenal gland tumor MYCN Amp Stage 4 ANBL00B1 (20151013) No Prior Tx WT amp WT NA 9/5/16 2016 329 329 1 Yes NA TTHSC NSG CB17-SCID subcutaneous 89 no Negative CRL Negative RNA/DNA - p2 >1.5cm^3 1.5-2.5 cm^3 2 yes
yes yes yes yes yes COG-N-603x-D.SNPFinalReports.txt COG-N-603x-D yes PPTCCOGN603x-D-human.bam FALSE COG-N-603x-D-human.bam 7ffa5a8429bbfc8237c406cd5b669f8b COG-N-603x-D-mouse.bam PPTC-COG-N-603x-R-human.bam e670452c939c5036d79262e087c4f353 PPTC-COG-N-603x-R-mouse.bam yes PPTC-COG-N-603x-R.human.genes.fpkm_tracking PPTCCOGN603x-D-PDX.bam 5623571bdec9a3704f8b3f2eb8ac3d98 PPTCCOGN603x-R-PDX.bam PPTC-COG-N-603x-D-human PPTC-COG-N-603x-D PPTC-COG-N-603x-R PDX P0079 COG-N-603x Neuroblastoma PPTCCOGN603x 30-PPTCCOGNBL603x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-603x PPTC-COG-N-603x-D PPTC-COG-N-603x-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First Unknown Unknown 0.72 Unknown European Adrenal gland, NOS tumor MYCN Amp Stage 4 ANBL00B1 (20151221), ANBL1221 (20161024) No Prior Tx WT amp WT NA 2/9/17 2017 419 292 1 Yes same patient as COG-N-623x (rel) NA TTHSC NSG CB17-SCID subcutaneous 49 yes Negative CRL Negative RNA/DNA - p2 2.2-2.58cm^3 2.0-3.0 cm^3 5 yes
yes no yes yes yes COG-N-618x-D1.SNPFinalReports.txt COG-N-618x-D1 yes PPTCCOGN618x-D-human.bam FALSE COG-N-618x-D1-human.bam 17879722b795b6027ba32c32c649df80 COG-N-618x-D1-mouse.bam NA NA NA no NA PPTCCOGN618x-D-PDX.bam 1a9db9738a89a1688eee11f363060983 NA NA PPTC-COG-N-618x-D1-human PPTC-COG-N-618x-D1 NA PDX P0080 COG-N-618x Neuroblastoma PPTCCOGN618x 30-PPTCCOGNBL618x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-618x PPTC-COG-N-618x-D NA No No No No No No Yes NA Male Progressing Disease Relapse Third Unknown Unknown 2.7 Unknown SouthAsianOrHispanic Suprarenal gland Left Bone marrow Non-MYCN Amp Stage 4 ANBL00B1 (20150616) Unknown WT non-amp WT NA 4/19/16 2016 309 309 256 Yes same patient as COG-N-619x NA TTHSC NSG CB17-SCID subcutaneous 95 yes Negative CRL Negative DNA - p2 2.0cm^3 0.75-2.0 cm^3 2 yes
yes yes yes yes yes COG-N-619x-D1.SNPFinalReports.txt COG-N-619x-D1 yes PPTCCOGN619x-D-human.bam FALSE COG-N-619x-D1-human.bam 0b271855fb975fe53dfc092444e4de57 COG-N-619x-D1-mouse.bam PPTC-COG-N-619x-R-human.bam e0e8ed53ca30224d75039ce1bd1ea337 PPTC-COG-N-619x-R-mouse.bam yes PPTC-COG-N-619x-R.human.genes.fpkm_tracking PPTCCOGN619x-D-PDX.bam 25331f88a52695deb6e493a32850bc04 PPTCCOGN619x-R-PDX.bam 0d3ae6f5823a70c679325b78eb6a9a1e COG-N-619x-D1-human COG-N-619x-D1 COG-N-619x-R1 PDX P0080 COG-N-619x Neuroblastoma PPTCCOGN619x 30-PPTCCOGNBL619x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-619x PPTC-COG-N-619x-D PPTC-COG-N-619x-R No No No No Yes Yes Yes NA Male Progressing Disease Relapse Third Unknown Unknown 2.7 Unknown SouthAsianOrHispanic Suprarenal gland Right Bone marrow Non-MYCN Amp Stage 4 ANBL00B1 (20150616) Unknown WT non-amp WT NA 4/19/16 2016 309 309 256 Yes same patient as COG-N-618x NA TTHSC NSG CB17-SCID subcutaneous 95 yes Negative CRL Negative RNA/DNA - p1 575mm^3 and 690mm^3 0.575-1.5 cm^3 2 yes
yes yes yes yes yes COG-N-620x-D.SNPFinalReports.txt COG-N-620x-D yes PPTCCOGN620x-D-human.bam FALSE COG-N-620x-D-human.bam 38799b705cde5acfb80654f6e013ac4e COG-N-620x-D-mouse.bam PPTC-COG-N-620x-R-human.bam 9435707796c4ea49ed81a89faad8a6cc PPTC-COG-N-620x-R-mouse.bam yes PPTC-COG-N-620x-R.human.genes.fpkm_tracking PPTCCOGN620x-D-PDX.bam ae92c647ecd557fdf3f4e3db1056f914 PPTCCOGN620x-R-PDX.bam 971597a307537884006a6c22ec2bee65 PPTC-COG-N-620x-D-human PPTC-COG-N-620x-D PPTC-COG-N-620x-R PDX P0081 COG-N-620x Neuroblastoma PPTCCOGN620x 30-PPTCCOGNBL620x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-620x PPTC-COG-N-620x-D PPTC-COG-N-620x-R No No No No Yes Yes Yes NA Male Progressing Disease Relapse Third Unknown Unknown 5.36 Unknown African Abdomen, NOS Abdominal wall, NOS Intra-abdominal site, NOS Unknown Non-MYCN Amp Stage 4 ANBL00B1 (20121116), ANBL0032 (20131114) Unknown WT non-amp WT NA Unknown Unknown 1412 1021 1021 Yes NA TTHSC NSG CB17-SCID subcutaneous 237 yes Negative CRL Negative RNA/DNA - p1 1.0-1.142cm^3 0.65-1.5 cm^3 3 no
yes yes yes yes yes COG-N-623x-D.SNPFinalReports.txt COG-N-623x-D yes PPTCCOGN623x-D-human.bam FALSE COG-N-623x-D-human.bam 85aa5f5ee2591c8f8b88c26f8d143464 COG-N-623x-D-mouse.bam PPTC-COG-N-623x-R-human.bam 4ecd7e0716b8ee47af5423e42881f721 PPTC-COG-N-623x-R-mouse.bam yes PPTC-COG-N-623x-R.human.genes.fpkm_tracking PPTCCOGN623x-D-PDX.bam 48402832471fd1fb389a8e5333c4e071 PPTCCOGN623x-R-PDX.bam 5884f442b9f8dbd6caf712b375711eec PPTC-COG-N-623x-D-human PPTC-COG-N-623x-D PPTC-COG-N-623x-R PDX P0079 COG-N-623x Neuroblastoma PPTCCOGN623x 30-PPTCCOGNBL623x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-623x PPTC-COG-N-623x-D PPTC-COG-N-623x-R No No No No Yes Yes Yes NA Male Progressing Disease Relapse Third Unknown Unknown 0.72 Unknown European Adrenal gland, NOS tumor MYCN Amp Stage 4 ANBL00B1 (20151221), ANBL1221 (20161024) Unknown WT amp WT NA 2/9/17 2017 419 292 292 Yes same patient as COG-N-603x (dx) NA TTHSC NSG CB17-SCID subcutaneous 62 yes Negative CRL Negative RNA/DNA - p2 2.1cm^3 1.1-2.0 cm^3 4 yes
yes yes yes yes yes COG-N-624x-D.SNPFinalReports.txt COG-N-624x-D yes PPTCCOGN624x-D-human.bam FALSE COG-N-624x-D-human.bam 4b540bea62cd2a5e98dbcaea922086c6 COG-N-624x-D-mouse.bam PPTC-COG-N-624x-R-human.bam 48a143b6d8bf06cb6aebd916772df2b2 PPTC-COG-N-624x-R-mouse.bam yes PPTC-COG-N-624x-R.human.genes.fpkm_tracking PPTCCOGN624x-D-PDX.bam 3d0926b48eb46dd4fa96a9538c79f130 PPTCCOGN624x-R-PDX.bam 0ad083e411eb17b786dfcaa7c0e29fca PPTC-COG-N-624x-D-human PPTC-COG-N-624x-D PPTC-COG-N-624x-R PDX P0082 COG-N-624x Neuroblastoma PPTCCOGN624x 30-PPTCCOGNBL624x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-624x PPTC-COG-N-624x-D PPTC-COG-N-624x-R No No No No Yes Yes Yes NA Female Progressing Disease Relapse Third Unknown Unknown 2.5 Unknown European Posterior mediastinum Unknown Non-MYCN Amp Stage 4 ANBL00B1 (20150209) Unknown WT non-amp R1275Q NA 5/6/16 2016 452 353 353 Yes NA TTHSC NSG CB17-SCID subcutaneous 110 yes Negative CRL Negative RNA/DNA - p1 >1.5cm^3 1.0-2.0 cm^3 2 no
yes yes yes yes yes COG-N-625x-D.SNPFinalReports.txt COG-N-625x-D yes PPTCCOGN625x-D-human.bam FALSE COG-N-625x-D-human.bam a9b356ad16b54b47942311daee418c1e COG-N-625x-D-mouse.bam PPTC-COG-N-625x-R-human.bam eef21fa6b9d6a71b20f43863969040b4 PPTC-COG-N-625x-R-mouse.bam yes PPTC-COG-N-625x-R.human.genes.fpkm_tracking PPTCCOGN625x-D-PDX.bam 19a0c288b5bd0145bdc2a12ae4f2a1b1 PPTCCOGN625x-R-PDX.bam d920089810967b4621b23923462ec0af PPTC-COG-N-625x-D-human PPTC-COG-N-625x-D PPTC-COG-N-625x-R PDX P0083 COG-N-625x Neuroblastoma PPTCCOGN625x 30-PPTCCOGNBL625x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-625x PPTC-COG-N-625x-D PPTC-COG-N-625x-R No No No No Yes Yes Yes NA Male Progressing Disease Relapse Third Unknown Unknown 4.98 Unknown European Adrenal gland, NOS Suprarenal gland Adrenal, NOS Unknown Non-MYCN Amp Stage 4 ANBL00B1 (20121126), ACCL1031 (20130612), ACCL0934 (20130613), AEPI07N1 (20130723) Unknown WT non-amp WT NA Unknown Unknown 1473 1473 236 Yes NA TTHSC NSG CB17-SCID subcutaneous 111 yes Negative CRL Negative RNA/RNA - p1 3.0cm^3 1.5-2.0 cm^3 3 yes
yes no yes yes yes COG-N-628x-D.SNPFinalReports.txt COG-N-628x-D yes PPTCCOGN628x-D-human.bam FALSE COG-N-628x-D-human.bam ec33ce80239c6937c0c7857202ca3d8e COG-N-628x-D-mouse.bam NA NA NA no NA PPTCCOGN628x-D-PDX.bam 1cdbb593b2c8e9e206389c6680eeed83 NA NA PPTC-COG-N-628x-D-human PPTC-COG-N-628x-D NA PDX P0084 COG-N-628x Neuroblastoma PPTCCOGN628x 30-PPTCCOGNBL628x NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-COG-N-628x PPTC-COG-N-628x-D NA No No No No No No Yes NA Female Diagnosis Diagnosis First Unknown Unknown 2.4 Unknown EastAsian Kidney, NOS bone marrow MYCN Amp Stage 4 ANBL00B1 (20160510) No Prior Tx WT amp WT NA Unknown Unknown Unknown Unknown 1 Yes NA TTHSC NSG CB17-SCID subcutaneous 76 yes Negative CRL Negative DNA - p1 1.53cm^3 1.4-2.0 cm^3 2 yes
yes yes yes yes yes PPTC-ES-1-D.SNPFinalReports.txt PPTC-ES-1-D yes PPTCES1-D-human.bam FALSE PPTC-ES-1-D-human.bam 946563c08b9a44267f4b1cb7d00ad916 PPTC-ES-1-D-mouse.bam PPTC-ES-1-R-human.bam 925266ad6a5ef73638effa4fc7da6ff1 PPTC-ES-1-R-mouse.bam yes PPTC-ES-1-R.human.genes.fpkm_tracking PPTCES1-D-PDX.bam 3587922eac2f6240a07e13965c64226d PPTCES1-R-PDX.bam d567121e95d21f22799c32c44892864e PPTC-ES-1-D-human PPTC-ES-1-D PPTC-ES-1-R XG P0085 ES-1 Ewing Sarcoma PPTCES1 41-PPTCES1 NA Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma NA ES Bone sarcoma Ewing Sarcoma bone sarcoma sarcoma ewing solid Houghton PPTC-ES-1 PPTC-ES-1-D PPTC-ES-1-R No No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 45 years 45 Unknown European Left thigh Left thigh EWS/FLI-1 translocation Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes Adult NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous;left flank NA
yes yes yes yes yes PPTC-ES-4-D-1.SNPFinalReports.txt PPTC-ES-4-D yes TARGET-41-PPT040-61A-01D-human.bam NA TARGET-41-PPT040-61A-01D-human.bam TARGET-41-PPT040-61A-01D-mouse.bam PPTC-ES-4-R-human.bam 08665493650a56cc845f4c614af3960a PPTC-ES-4-R-mouse.bam yes PPTC-ES-4-R.human.genes.fpkm_tracking TARGET-41-PPT040-61A-01D.PDX.bam PPTCES4-R-PDX.bam d7a9a905aa2d08906e741ab791a7ce85 TARGET-41-PPT040-61A-01D-human TARGET-41-PPT040-61A-01D TARGET-41-PPT040-61A-01R XG P0086 ES-4 Ewing Sarcoma PPTCES4 41-PPTCES4 TARGET-41-PPT040 Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma NA ES Bone sarcoma Ewing Sarcoma bone sarcoma sarcoma ewing solid Houghton PPTC-ES-4 PPTC-ES-4-D PPTC-ES-4-R No Yes No No Yes Yes No Sarcoma Male Relapse Relapse Second 18 years 18 Unknown European 8th rib Lung/pleura EWS/FLI-1 translocation Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes B16 NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-ES-6-D-1.SNPFinalReports.txt PPTC-ES-6-D yes TARGET-41-PPT041-61A-01D-human.bam NA TARGET-41-PPT041-61A-01D-human.bam TARGET-41-PPT041-61A-01D-mouse.bam PPTC-ES-6-R-human.bam 832b1ac0d258977f8cd4269117efcece PPTC-ES-6-R-mouse.bam yes PPTC-ES-6-R.human.genes.fpkm_tracking TARGET-41-PPT041-61A-01D.PDX.bam PPTCES6-R-PDX.bam 82cb0fb005f63a0d7c231f4219c4d9da TARGET-41-PPT041-61A-01D-human TARGET-41-PPT041-61A-01D TARGET-41-PPT041-61A-01R XG P0087 ES-6 Ewing Sarcoma PPTCES6 41-PPTCES6 TARGET-41-PPT041 Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma NA ES Bone sarcoma Ewing Sarcoma bone sarcoma sarcoma ewing solid Houghton PPTC-ES-6 PPTC-ES-6-D PPTC-ES-6-R No Yes No No Yes Yes No Sarcoma Male Relapse Relapse Second 17 years 17 Unknown European R. Proximal Tibia R. femur/rib/verebra EWS/FLI-1 translocation Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes B15 NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-ES-8-D.SNPFinalReports.txt PPTC-ES-8-D yes PPTC-ES-8-D-human.bam TRUE PPTC-ES-8-D-human.bam 8879605e46128dc01d2ea843e6222082 PPTC-ES-8-D-mouse.bam PPTC-ES-8-R-human.bam 0c0f7851e3d8becd3dcdff288e12b73d PPTC-ES-8-R-mouse.bam yes PPTC-ES-8-R.human.genes.fpkm_tracking PPTCES8-D-PDX.bam 9e9b95b6fc14f4e761d6743b2d27cf2a PPTCES8-R-PDX.bam ea58baa5a64be244fe9ffe51cbd56f22 PPTC-ES-8-D-human PPTC-ES-8-D PPTC-ES-8-R XG P0088 ES-8 Ewing Sarcoma PPTCES8 41-PPTCES8 NA Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma NA ES Bone sarcoma Ewing Sarcoma bone sarcoma sarcoma ewing solid Houghton PPTC-ES-8 PPTC-ES-8-D PPTC-ES-8-R No No No No Yes Yes Yes NA Male Relapse Relapse Second 10 years 10 Unknown European L. Proximal humerus/bone marrow Femur EWS/FLI-1 translocation Unknown Unknown Unknown (24 days post DX) NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-ETP-1-D.SNPFinalReports.txt PPTC-ETP-1-D yes PPTCETP1-D-human.bam FALSE PPTC-ETP-1-D-human.bam 987227afa6ccec1a867f078dbb01338f PPTC-ETP-1-D-mouse.bam PPTC-ETP-1-R-human.bam 37ca8335e08ced696b66c114c48860ba PPTC-ETP-1-R-mouse.bam yes PPTC-ETP-1-R.human.genes.fpkm_tracking PPTCETP1-D-PDX.bam 0c4d81eac1cba0e8f5c9b2b732420b4f PPTCETP1-R-PDX.bam ce7ca29f87c8d405d1d37641860cf07c PPTC-ETP-1-D-human PPTC-ETP-1-D PPTC-ETP-1-R PDX P0089 ETP-1 ETP-ALL PPTCETP1 10-PPTCETP1 NA ALL ETP-ALL ETP-ALL ETP-ALL NA ETPLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-ETP-1 PPTC-ETP-1-D PPTC-ETP-1-R Yes No Yes No Yes Yes Yes NA Male Diagnosis Diagnosis First 192 months 16.00 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 1997 1997 35 0 0 Yes SJTALL165 NA CCI NOD/SCID and NSG (ABR) NOD/SCID and NSG intravenous, either lateral tail vein 119 (NSG) 145 (NOD/SCID) Yes (SNP) - ref is PDX 1o 81 49 4
yes yes yes yes yes PPTC-ETP-2-D.SNPFinalReports.txt PPTC-ETP-2-D yes PPTCETP2-D-human.bam FALSE PPTC-ETP-2-D-human.bam 701f89d68631ff2e2acfd172a35b77b2 PPTC-ETP-2-D-mouse.bam PPTC-ETP-2-R-human.bam bd8d48e309fca221aa3f68b7c53f61fb PPTC-ETP-2-R-mouse.bam yes PPTC-ETP-2-R.human.genes.fpkm_tracking PPTCETP2-D-PDX.bam 018c9e67a5244983f5c0de1bd06bd520 PPTCETP2-R-PDX.bam bfae0611d2293af682cd6420e5350f50 PPTC-ETP-2-D-human PPTC-ETP-2-D PPTC-ETP-2-R PDX P0090 ETP-2 ETP-ALL PPTCETP2 10-PPTCETP2 NA ALL ETP-ALL ETP-ALL ETP-ALL NA ETPLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-ETP-2 PPTC-ETP-2-D PPTC-ETP-2-R Yes No Yes No Yes Yes Yes NA Male Diagnosis Diagnosis First 36 months 3.00 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 2018 2018 6003 0 0 Yes SJTALL004 NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 110 Yes (SNP) - ref is PDX 1o Negative 67 61 4
yes yes yes yes yes PPTC-ETP-3-D.SNPFinalReports.txt PPTC-ETP-3-D yes PPTCETP3-D-human.bam FALSE PPTC-ETP-3-D-human.bam d0eee1ef4f0d95b7716479afa7fc2173 PPTC-ETP-3-D-mouse.bam PPTC-ETP-3-R-human.bam 9e8e790dff757ed44bd47b376f72a24d PPTC-ETP-3-R-mouse.bam yes PPTC-ETP-3-R.human.genes.fpkm_tracking PPTCETP3-D-PDX.bam eaf06e872c4d7b08974ef166801df59c PPTCETP3-R-PDX.bam 7c4f488b458d9a0fa515e0b428ded379 PPTC-ETP-3-D-human PPTC-ETP-3-D PPTC-ETP-3-R PDX P0091 ETP-3 ETP-ALL PPTCETP3 10-PPTCETP3 NA ALL ETP-ALL ETP-ALL ETP-ALL NA ETPLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-ETP-3 PPTC-ETP-3-D PPTC-ETP-3-R Yes No Yes No Yes Yes Yes NA Male Diagnosis Diagnosis First 168 months 14.00 Unknown African Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 2008 2008 378 375 0 Yes SJTALL010 NA CCI NSG (ABR) NOD/SCID and NSG intravenous, either lateral tail vein 200 Yes (SNP) - ref is PDX 1o 124 110 4
yes yes yes yes yes PPTC-ETP-4-D.SNPFinalReports.txt PPTC-ETP-4-D yes PPTCETP4-D-human.bam FALSE PPTC-ETP-4-D-human.bam 9351c60b45b40742f4adb4df7d7c6d52 PPTC-ETP-4-D-mouse.bam PPTC-ETP-4-R-human.bam 022cd2462049237d15768acbc12f1948 PPTC-ETP-4-R-mouse.bam yes PPTC-ETP-4-R.human.genes.fpkm_tracking PPTCETP4-D-PDX.bam 89c33070b78992ab8013ae9634a88697 PPTCETP4-R-PDX.bam 4fa69c0a568d9943b1094a7b914c62f4 PPTC-ETP-4-D-human PPTC-ETP-4-D PPTC-ETP-4-R PDX P0092 ETP-4 ETP-ALL PPTCETP4 10-PPTCETP4 NA ALL ETP-ALL ETP-ALL ETP-ALL NA ETPLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-ETP-4 PPTC-ETP-4-D PPTC-ETP-4-R Yes No Yes No Yes Yes Yes NA Male Diagnosis Diagnosis First 107 months 8.92 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 2014 2014 2464 N/A 0 Yes PARIKN NA CCI NSG NSG intravenous, either lateral tail vein Unknown Yes (SNP) - ref is PDX 2o 78 82 4
yes yes yes yes yes PPTC-ETP-5-D.SNPFinalReports.txt PPTC-ETP-5-D yes PPTCETP5-D-human.bam FALSE PPTC-ETP-5-D-human.bam f2ee7b0402647141023427f2435d280b PPTC-ETP-5-D-mouse.bam PPTC-ETP-5-R-human.bam c4dfce56499268d571f758053b00e11f PPTC-ETP-5-R-mouse.bam yes PPTC-ETP-5-R.human.genes.fpkm_tracking PPTCETP5-D-PDX.bam b8b828605cf1c357e501cc6b4f6e0269 PPTCETP5-R-PDX.bam d173bec221858f0c7fd01a6dbb3281a2 PPTC-ETP-5-D-human PPTC-ETP-5-D PPTC-ETP-5-R PDX P0093 ETP-5 ETP-ALL PPTCETP5 10-PPTCETP5 NA ALL ETP-ALL ETP-ALL ETP-ALL NA ETPLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-ETP-5 PPTC-ETP-5-D PPTC-ETP-5-R Yes No Yes No Yes Yes Yes NA Male Diagnosis Diagnosis First 191 months 15.92 Unknown European Unknown Bone marrow Has MLL-MLLT4 fusion, but confirmed ETP by D. Teachy Unknown Unknown No Prior Tx NA NA 2009 2009 466 349 0 Yes PARXNE NA CCI NSG NSG intravenous, either lateral tail vein Unknown Yes (SNP) 110 75 4
yes yes yes yes yes PPTC-ETP-6-D.SNPFinalReports.txt PPTC-ETP-6-D yes PPTCETP6-D-human.bam FALSE PPTC-ETP-6-D-human.bam 046c90bb7b5fb09445218a0266bb4178 PPTC-ETP-6-D-mouse.bam PPTC-ETP-6-R-human.bam 928aba1c91510693539e90167b6900a3 PPTC-ETP-6-R-mouse.bam yes PPTC-ETP-6-R.human.genes.fpkm_tracking PPTCETP6-D-PDX.bam 93b50057696cc56e0bdef48fe27a21d7 PPTCETP6-R-PDX.bam b57b41a851e8311069132374fe920839 PPTC-ETP-6-D-human PPTC-ETP-6-D PPTC-ETP-6-R PDX P0094 ETP-6 ETP-ALL PPTCETP6 10-PPTCETP6 NA ALL ETP-ALL ETP-ALL ETP-ALL NA ETPLL ALL ALL leukemia leukemia T-ALL or ETP-ALL leukemia Lock PPTC-ETP-6 PPTC-ETP-6-D PPTC-ETP-6-R Yes No Yes No Yes Yes Yes NA Female Diagnosis Diagnosis First 234 months 19.50 Unknown African Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 2009 2009 308 286 0 Yes PASKMG NA CCI NSG NSG intravenous, either lateral tail vein Unknown Yes (SNP) - ref is PDX 2o 90 73 4
yes yes yes yes yes PPTC-EW-5-D-1.SNPFinalReports.txt PPTC-EW-5-D yes TARGET-41-PPT035-60A-01D-human.bam NA TARGET-41-PPT035-60A-01D-human.bam TARGET-41-PPT035-60A-01D-mouse.bam PPTC-EW-5-R-human.bam 661199b5773d9ae61c2189c26a19e920 PPTC-EW-5-R-mouse.bam yes PPTC-EW-5-R.human.genes.fpkm_tracking TARGET-41-PPT035-60A-01D.PDX.bam PPTCEW5-R-PDX.bam f16fda16cc55ed84cfe8b549a22101e6 TARGET-41-PPT035-60A-01D-human TARGET-41-PPT035-60A-01D TARGET-41-PPT035-60A-01R XG P0095 EW-5 Ewing, Ewings PPTCEW5 41-PPTCEW5 TARGET-41-PPT035 Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma NA ES Bone sarcoma Ewing Sarcoma bone sarcoma sarcoma ewing solid Houghton PPTC-EW-5 PPTC-EW-5-D PPTC-EW-5-R No Yes Yes No Yes Yes No Sarcoma Male Diagnosis Diagnosis First 201 months 16.75 European European Paraspinal mass Paraspinal mass EWS/FLI-1 translocation Unknown Unknown Prior Chemotherapy Mutant C to T @ 1260 causing an Arg to Cys AA change @ 337. NA NA Unknown Unknown Unknown Unknown Unknown Yes B2 NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-EW-8-D-1.SNPFinalReports.txt PPTC-EW-8-D yes TARGET-41-PPT036-60A-01D-human.bam NA TARGET-41-PPT036-60A-01D-human.bam TARGET-41-PPT036-60A-01D-mouse.bam PPTC-EW-8-R-human.bam 1a16e11a828ddc2d69ecf76ab901bfdf PPTC-EW-8-R-mouse.bam yes PPTC-EW-8-R.human.genes.fpkm_tracking TARGET-41-PPT036-60A-01D.PDX.bam PPTCEW8-R-PDX.bam 252c97ff67cfe74297f36972145378b0 TARGET-41-PPT036-60A-01D-human TARGET-41-PPT036-60A-01D TARGET-41-PPT036-60A-01R XG P0096 EW-8 Ewing, Ewings PPTCEW8 41-PPTCEW8 TARGET-41-PPT036 Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma NA ES Bone sarcoma Ewing Sarcoma bone sarcoma sarcoma ewing solid Houghton PPTC-EW-8 PPTC-EW-8-D PPTC-EW-8-R No Yes Yes No Yes Yes No Sarcoma Male Diagnosis Diagnosis First 18 years 18 European European Abdominal mass Abdominal mass EWS/FLI-1 translocation Unknown Unknown No Prior Tx Mutant 220 Tyr-Cys NA NA Unknown Unknown Unknown Unknown Unknown Yes originally diagnosed ERMS B3 NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-G401-D-1.SNPFinal PPTC-G401-D yes PPTCG401-D-human.bam FALSE PPTC-G401-D-human.bam a9b6b66e3904d6d9e18148bac97c9f38 PPTC-G401-D-mouse.bam PPTC-G401-R-human.bam 42abaebf75c39e7f529b4d669b47697c PPTC-G401-R-mouse.bam yes PPTC-G401-R.human.genes.fpkm_tracking PPTCG401-D-PDX.bam 9b12e544147c3f8b993f24220cfd3396 PPTCG401-R-PDX.bam 675b636607ff2d18639c822fbb38dc53 PPTC-G401-D-human PPTC-G401-D PPTC-G401-R XG P0097 G401 ATRT PPTCG401 62-PPTCG401 NA Extracranial Rhabdoid Extracranial Rhabdoid Extracranial Rhabdoid Extracranial Rhabdoid NA ATRT CNS embryonal tumor Extracranial Rhabdoid embryonal brain rhabdoid brain Houghton PPTC-G401 PPTC-G401-D PPTC-G401-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 3 months 0.25 European European Kidney Kidney Not noted Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-IBs-2373PNET-D.SNPFinalReports.txt PPTC-IBs-2373PNET-D yes PPTC-IBs-2373PNET-D-human.bam NA PPTC-IBs-2373PNET-D-human.bam 049b0337782b20df82b46020e8d1df22 PPTC-IBs-2373PNET-D-mouse.bam PPTC-IBs-2373PNET-R-human.bam b899a29ee56a4de2f5400eb6643275b2 PPTC-IBs-2373PNET-R-mouse.bam yes PPTC-IBs-2373PNET-R.human.genes.fpkm_tracking PPTCIBs2373PNET-D-PDX.bam 041d30c0274e27fd35230b10ce732f11 PPTCIBs2373PNET-R-PDX.bam 608565001eec6d65a928f2588e1fa952 PPTC-IBs-2373PNET-D-human PPTC-IBs-2373PNET-D PPTC-IBs-2373PNET-R PDOX P0098 IBs-2373PNET Primitive Neuronectomal tumors (PNET) PPTCIBs2373PNET 65-PPTCIBs2373PNET NA ETMR ETMR Other CNS Embryonal ETMR ETMR ETANTR CNS embryonal tumor embryonal embryonal brain embryonal brain Li, XN PPTC-IBs-2373PNET PPTC-IBs-2373PNET-D PPTC-IBs-2373PNET-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 3 years 3 Hispanic or Latino SouthAsianOrHispanic Brain stem Brain stem GFAP+, SYN+,P53+,Ki67+, Myc-, PTEN loss sPNET, GFAP+, SYN+,P53+,Ki67+, Myc-, PTEN loss, C19MC amplification by genetics, ETMR by genetics Unknown Unknown XRT, cytox,CDDP,VCR,VP-16,Carbo,TT NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J Brain Stem NA
yes yes yes yes yes PPTC-IBs-P1215DIPG-D-1.SNPFinalReport.txt PPTC-IBs-P1215DIPG-D no NA NA NA NA PPTC-IBs-P1215DIPG-R-human.bam 20e07518072443977abeac0aa8454bc4 PPTC-IBs-P1215DIPG-R-mouse.bam yes PPTC-IBs-P1215DIPG-R.human.genes.fpkm_tracking NA NA PPTCIBsP1215DIPG-R-PDX.bam 0d16b3d1f047b825f67079f7e62dabc7 NA NA NA PDOX P0099 IBs-P1215DIPG DIPG PPTCIBsP1215DIPG 65-PPTCIBsP1215DIPG NA DIPG DIPG Astrocytoma DIPG IDH/H3 WT DIPG CNS astrocytic tumor Other Brain astrocytic brain other brain Li, XN PPTC-IBs-P1215DIPG NA PPTC-IBs-P1215DIPG-R Yes Yes Yes No Yes Yes No NA Male Relapse Relapse Second Unknown Unknown NA Unknown European Brain stem Brain stem Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested to not sequence NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J Brain Stem NA
yes yes yes yes yes PPTC-IBs-W0128DIPG-D-2.SNPFinalReport.txt PPTC-IBs-W0128DIPG-D no NA NA NA NA PPTC-IBs-W0128DIPG-R-human.bam fd75c11eaf03348ba17477575be39ddd PPTC-IBs-W0128DIPG-R-mouse.bam yes PPTC-IBs-W0128DIPG-R.human.genes.fpkm_tracking NA NA PPTCIBsW0128DIPG-R-PDX.bam c1037848930acad6c23917271675f71b NA NA NA PDOX P0100 IBs-W0128DIPG DIPG PPTCIBsW0128DIPG 65-PPTCIBsW0128DIPG NA DIPG DIPG Astrocytoma DIPG IDH/H3 WT DIPG CNS astrocytic tumor Other Brain astrocytic brain other brain Li, XN PPTC-IBs-W0128DIPG NA PPTC-IBs-W0128DIPG-R Yes Yes Yes No Yes Yes No NA Male Relapse Relapse Second Unknown Unknown NA Unknown European Brain stem Brain stem Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested to not sequence NA TCCRC RAG2 Brain Stem NA
yes yes yes yes yes PPTCIC1128GBM-1.SNPFinalReports.txt PPTCIC1128GBM no NA NA NA NA PPTC-IC-1128GBM-R-human.bam 5fae2a7c16b65329f3d0b6e2da6be1ea PPTC-IC-1128GBM-R-mouse.bam yes PPTC-IC-1128GBM-R.human.genes.fpkm_tracking NA NA PPTCIC1128GBM-R-PDX.bam 159ca30d3e3a50e7dfbda9cc3327c85c NA NA NA PDOX P0101 IC-1128GBM Glioblastoma PPTCIC1128GBM 61-PPTCIC1128GBM NA Glioblastoma Glioblastoma Astrocytoma Glioblastoma IDH/H3 WT GB CNS astrocytic tumor Glioblastoma astrocytic brain astrocytic brain Li, XN PPTC-IC-1128GBM NA PPTC-IC-1128GBM-R Yes Yes Yes No Yes Yes No NA Male Unknown Unknown Third Unknown Unknown 8.5 Hispanic or Latino European Cerebrum Cerebrum Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested to not sequence NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
no yes yes yes no NA no NA NA NA NA PPTC-IC-1425EPN-R-human.bam 1df0349a1651b2be83d9c9d35f8fc940 PPTC-IC-1425EPN-R-mouse.bam yes PPTC-IC-1425EPN-R.human.genes.fpkm_tracking NA NA PPTCIC1425EPN-R-PDX.bam 280238219859e0601492d94840234c3f NA NA NA PDOX P0102 IC-1425EPN Ependymoma PPTCIC1425EPN 60-PPTCIC1425EPN NA Ependymoma Ependymoma Ependymoma ST-EPN-RELA ST-EPN-RELA EPM CNS ependymal tumor Ependymoma other brain other brain Li, XN PPTC-IC-1425EPN NA PPTC-IC-1425EPN-R Yes Yes Yes No Yes Yes No NA Male Relapse Relapse Second Unknown Unknown 9.8 Non-Hispanic NA Cerebrum Cerebrum Aplastic; supratentorial; C11ORF95-RELA positive Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested to not sequence NA TCCRC RAG2 R. Cerebrum NA
yes yes yes yes yes PPTC-IC-1499EPB-D-1.SNPFinalReport.txt PPTC-IC-1499EPB-D yes PPTC-IC-1499EPB-D-human.bam NA PPTC-IC-1499EPB-D-human.bam 4efd2f49d7aec55cc10947de5684fd85 PPTC-IC-1499EPB-D-mouse.bam PPTC-IC-1499EPB-R-human.bam b2cb1dfeb8b52fcca448858331674728 PPTC-IC-1499EPB-R-mouse.bam yes PPTC-IC-1499EPB-R.human.genes.fpkm_tracking PPTC-IC-1499EPB-D.PDX.bam PPTCIC1499EPB-R-PDX.bam 11dbf51620bbef276d306b079d102e6e PPTC-IC-1499EPB-D-human PPTC-IC-1499EPB-D PPTC-IC-1499EPB-R PDOX P0103 IC-1499EPB Ependymoblastoma PPTCIC1499EPB 65-PPTCIC1499EPB NA Ependymoblastoma Ependymoblastoma Other CNS Embryonal Ependymoblastoma Ependymoblastoma EMBT CNS embryonal tumor PNET embryonal brain embryonal brain Li, XN PPTC-IC-1499EPB PPTC-IC-1499EPB-D PPTC-IC-1499EPB-R No No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 26 months 2.17 Hispanic or Latino SouthAsianOrHispanic Cerebrum Cerebrum Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-IC-1621GBM-D.SNPFinalReports.txt PPTC-IC-1621GBM-D yes PPTC-IC-1621GBM-D-human.bam NA PPTC-IC-1621GBM-D-human.bam 18955792850acd964ba8f26c4d6baf50 PPTC-IC-1621GBM-D-mouse.bam PPTC-IC-1621GBM-IV-R-human.bam ff51e46a886d0a6e1155e853dcd60532 PPTC-IC-1621GBM-IV-R-mouse.bam yes PPTC-IC-1621GBM-IV-R.human.genes.fpkm_tracking PPTCIC1621GBM-D-PDX.bam 517d7692fe67a138dcac29fdb98b1849 PPTCIC1621GBM-R-PDX.bam 35991619d2ede87be7f398d57ae53142 PPTC-IC-1621GBM-D-human PPTC-IC-1621GBM-D PPTC-IC-1621GBM-R PDOX P0104 IC-1621GBM Glioblastoma PPTCIC1621GBM 61-PPTCIC1621GBM NA Glioblastoma Glioblastoma Astrocytoma Glioblastoma IDH/H3 WT GB CNS astrocytic tumor Glioblastoma astrocytic brain astrocytic brain Li, XN PPTC-IC-1621GBM PPTC-IC-1621GBM-D PPTC-IC-1621GBM-R Yes No Yes No Yes Yes Yes NA Male Diagnosis Diagnosis First 6 years 6 Non-Hispanic SouthAsianOrHispanic Cerebrum Cerebrum GFAP+, P53+, KI67+ GFAP+, P53+, KI67+ Stage 4 Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-IC-22909PNET-rIII-D.SNPFinalReports.txt PPTC-IC-22909PNET-rIII-D yes PPTC-IC-22909PNET-rIII-D-human.bam NA PPTC-IC-22909PNET-rIII-D-human.bam 74fe2cdd7c4dd40492e9810d0292c0ca PPTC-IC-22909PNET-rIII-D-mouse.bam PPTC-IC-22909PNET-R-human.bam 4ed977091ef3722323ad60fec190d278 PPTC-IC-22909PNET-R-mouse.bam yes PPTC-IC-22909PNET-R.human.genes.fpkm_tracking PPTCIC22909PNET-D-PDX.bam fb3e3407dba2e04c3f522e08752a92c3 PPTCIC22909PNET-R-PDX.bam 1558073a180f058654976a196fa30c27 PPTC-IC-22909PNET-rIII-D-human PPTC-IC-22909PNET-rIII-D PPTC-IC-22909PNET-rIII-R PDOX P0105 IC-22909PNET-rIII PNET PPTCIC22909PNET 65-PPTCIC22909PNET NA PNET CNS EFT-CIC Other CNS Embryonal CNS EFT-CIC CNS EFT-CIC EMBT CNS embryonal tumor embryonal embryonal brain embryonal brain Li, XN PPTC-IC-22909PNET-rIII PPTC-IC-22909PNET-rIII-D PPTC-IC-22909PNET-rIII-R No No No No Yes Yes Yes NA Female Relapse Relapse Second 3 years 3 Hispanic or Latino SouthAsianOrHispanic Cerebrum Cerebrum GFAP-,SYN+,MAP++,P53, Ki67+++ sPNET, GFAP-,SYN+,MAP++,P53, Ki67+++; SMARCB1 hemizygous loss; SMARCB1 RNA expressed; CNS EFT-CIC by genetics Unknown Unknown cytox,CDDP,VCR,VP-16,Carbo,TT NA NA Unknown Unknown Unknown Unknown Unknown Yes Same patient as 9850PNET; recurrent NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes no yes yes yes PPTC-IC-2305GBM.SNPFinalReports.txt PPTCIC2305GBM no NA NA NA NA NA NA NA no NA NA NA NA NA NA NA NA PDOX P0106 IC-2305GBM Glioblastoma PPTCIC2305GBM 61-PPTCIC2305GBM NA Glioblastoma Glioblastoma Astrocytoma Glioblastoma IDH/H3 WT GB CNS astrocytic tumor Glioblastoma astrocytic brain astrocytic brain Li, XN PPTC-IC-2305GBM NA NA Yes Yes Yes No No No No NA Male Diagnosis Diagnosis First Unknown Unknown 9 Hispanic or Latino SouthAsianOrHispanic Cerebrum Cerebrum Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested to not sequence NA TCCRC RAG2 R. Cerebrum NA
yes yes yes yes yes PPTC-IC-2264PNET-D.SNPFinalReports.txt PPTC-IC-2264PNET-D yes PPTC-IC-2264PNET-D-human.bam NA PPTC-IC-2264PNET-D-human.bam 181545ff7e3379101844f55b10028e1c PPTC-IC-2264PNET-D-mouse.bam PPTC-IC-2264PNET-R-human.bam d3195f5dd65b6e7703db11a6be87a922 PPTC-IC-2264PNET-R-mouse.bam yes PPTC-IC-2264PNET-R.human.genes.fpkm_tracking PPTCIC2664PNET-D-PDX.bam ac45db9810f68e3c742987688025c5ec PPTCIC2664PNET-R-PDX.bam 4c9fcb4e4f1c21a3472419f7c5a858b1 PPTC-IC-2264PNET-D-human PPTC-IC-2264PNET-D PPTC-IC-2264PNET-R PDOX P0107 IC-2664PNET PNET PPTCIC2664PNET 65-PPTCIC2664PNET NA High-grade glioma Astrocytoma Astrocytoma Astrocytoma MYCN ASTR CNS astrocytic tumor Astrocytoma astrocytic brain astrocytic brain Li, XN PPTC-IC-2664PNET PPTC-IC-2664PNET-D PPTC-IC-2664PNET-R No No Yes No No No No NA Female Diagnosis Diagnosis First 13 years 13 Unknown SouthAsianOrHispanic Cerebrum Cerebrum sPNET; MYCN amp Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-IC-3635PXA-D-2.SNPFinalReport.txt PPTC-IC-3635PXA-D yes PPTC-IC-3635PXA-D-human.bam NA PPTC-IC-3635PXA-D-human.bam e454ac91b51f1ee0f6350ef2d2d74e37 PPTC-IC-3635PXA-D-mouse.bam PPTC-IC-3635PXA-R-human.bam bf84c08e7b21a5c2e686bf293cdab0e9 PPTC-IC-3635PXA-R-mouse.bam yes PPTC-IC-3635PXA-R.human.genes.fpkm_tracking PPTCIC3635PXA-D-PDX.bam a04f6e5c02c6b54333d6e9503f1d64d9 PPTCIC3635PXA-R-PDX.bam 2b76ca080ff7f9460f74e9cc8cc9eefa PPTC-IC-3635PXA-D-human PPTC-IC-3635PXA-D PPTC-IC-3635PXA-R PDOX P0108 IC-3635PXA Pleomorphic Xanthoastrocytoma PPTCIC3635PXA 65-PPTCIC3635PXA NA Pleomorphic Xanthoastrocytoma Astrocytoma Astrocytoma Astrocytoma PXA ASTR CNS astrocytic tumor Other Brain astrocytic brain astrocytic brain Li, XN PPTC-IC-3635PXA PPTC-IC-3635PXA-D PPTC-IC-3635PXA-R No No No No Yes Yes Yes NA Female Unknown Unknown Third 10 years 10 Unknown European Cerebrum Cerebrum GFAP+,KI67+,VIM+ GFAP+,KI67+,VIM+; BRAF V600E mutation, CDKN2A deletion Stage 2/3 Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes no yes yes no NA yes PPTC-IC-3704GBM-D-human.bam NA PPTC-IC-3704GBM-D-human.bam 582511f3817636ad9c7558dfc91245d8 PPTC-IC-3704GBM-D-mouse.bam NA NA NA no NA PPTCIC3704GBM-D-PDX.bam 361ddc789e6b2c16523bdae64ac052d9 NA NA PPTC-IC-3704GBM-D-human PPTC-IC-3704GBM-D NA PDOX P0109 IC-3704GBM Glioblastoma PPTCIC3704GBM 61-PPTCIC3704GBM NA Glioblastoma Glioblastoma Astrocytoma Glioblastoma IDH/H3 WT GB CNS astrocytic tumor Glioblastoma astrocytic brain astrocytic brain Li, XN PPTC-IC-3704GBM PPTC-IC-3704GBM-D NA Yes No Yes No No No Yes NA Male Diagnosis Diagnosis First 12 years 12 Hispanic or Latino NA Cerebrum Cerebrum GFAP+, P53+, KI67+, EGFR+ GFAP+, P53+, KI67+, EGFR+ Stage 4 Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-IC-3752GBM-TC-D-1.SNPFinalReports.txt PPTC-IC-3752GBM-TC-D no NA NA NA NA PPTC-IC-3752GBM-TC-R-human.bam ca1bc6a713d5ffbd04f3f7b58e38dfa5 PPTC-IC-3752GBM-TC-R-mouse.bam yes PPTC-IC-3752GBM-TC-R.human.genes.fpkm_tracking NA NA PPTCIC3752GBM-R-PDX.bam bdd6b19d6342acbf487a3abf892a74ae NA NA PPTCIC3752GBM-R PDOX P0110 IC-3752GBM Glioblastoma PPTCIC3752GBM 61-PPTCIC3752GBM NA Glioblastoma Glioblastoma Astrocytoma Glioblastoma IDH/H3 WT GB CNS astrocytic tumor Glioblastoma astrocytic brain astrocytic brain Li, XN PPTC-IC-3752GBM-TC NA PPTC-IC-3752GBM-TC-R Yes Yes Yes No Yes Yes No NA Female Relapse Relapse Second Unknown Unknown 5 Non-Hispanic European Cerebrum Cerebrum Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested not to sequence NA TCCRC RAG2 R. Cerebrum NA
yes yes yes yes yes PPTC-IC-6634GBM-TC-D.SNPFinalReports.txt PPTC-IC-6634GBM-TC-D yes PPTC-IC-6634GBM-TC-D-human.bam NA PPTC-IC-6634GBM-TC-D-human.bam d77b644a36b86dedb1a128a698dbdf13 PPTC-IC-6634GBM-TC-D-mouse.bam PPTC-IC-6634GBM-TC-R-human.bam 6f2fe67585e6826172ca72285b9b05da PPTC-IC-6634GBM-TC-R-mouse.bam yes PPTC-IC-6634GBM-TC-R.human.genes.fpkm_tracking PPTCIC6634GBM-D-PDX.bam 67970551cd8047467d6d28cb5505fb88 PPTCIC6634GBM-R-PDX.bam f29c271e56158890513738400d8a4d51 PPTC-IC-6634GBM-TC-D-human PPTC-IC-6634GBM-TC-D PPTC-IC-6634GBM-TC-R PDOX P0111 IC-6634GBM Glioblastoma PPTCIC6634GBM 61-PPTCIC6634GBM NA Glioblastoma Glioblastoma Astrocytoma Glioblastoma MYCN GB CNS astrocytic tumor Glioblastoma astrocytic brain astrocytic brain Li, XN PPTC-IC-6634GBM-TC PPTC-IC-6634GBM-TC-D PPTC-IC-6634GBM-TC-R Yes No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 17 years 17 Hispanic or Latino European Cerebrum Cerebrum GFAP+, PTEN+ GFAP+, PTEN+ Stage 4 Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-IC-9320GCT-D-1.SNPFinalReport.txt PPTC-IC-9320GCT-D no NA NA NA NA PPTC-IC-9320GCT-R-human.bam 27e6e531b475d7b1a1d06246027b62e1 PPTC-IC-9320GCT-R-mouse.bam yes PPTC-IC-9320GCT-R.human.genes.fpkm_tracking NA NA PPTCIC9320GCT-R-PDX.bam 321358a741cfb42c0b5462edc93cf559 NA NA PPTCIC9320GCT-R PDOX P0112 IC-9320GCT CNS germinoma PPTCIC9320GCT 65-PPTCIC9320GCT NA CNS germinoma CNS germinoma CNS germinoma CNS germinoma GMN Other brain Other Brain other brain other brain Li, XN PPTC-IC-9320GCT NA PPTC-IC-9320GCT-R No Yes No No Yes Yes No NA Female Diagnosis Diagnosis First Unknown Unknown NA Unknown Mixed_or_Unknown Cerebrum Cerebrum Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested not to sequence NA TCCRC RAG1tmiMom/J R. Cerebrum NA
yes yes yes yes yes PPTC-IC-9635EPN-D-1.SNPFinal PPTC-IC-9635EPN-D yes PPTC-IC-9635EPN-D-human.bam NA PPTC-IC-9635EPN-D-human.bam 8e62796f6167525fde8dbeba1f2967c2 PPTC-IC-9635EPN-D-mouse.bam PPTC-IC-9635EPN-R-human.bam f67956cfc99109d82138eb95bbdb967e PPTC-IC-9635EPN-R-mouse.bam yes PPTC-IC-9635EPN-R.human.genes.fpkm_tracking PPTCIC9635EPN-D-PDX.bam c45e440a3338ec3e4530481e1163f1d2 PPTCIC9635EPN-R-PDX.bam e968d162c71c924175c9f9f8a6e1d1c2 PPTC-IC-9635EPN-D-human PPTC-IC-9635EPN-D PPTC-IC-9635EPN-R PDOX P0113 IC-9635EPN Ependymoma PPTCIC9635EPN 60-PPTCIC9635EPN NA Ependymoma Ependymoma Ependymoma ST-EPN-YAP1 ST-EPN-YAP1 EPM CNS ependymal tumor Ependymoma other brain other brain Li, XN PPTC-IC-9635EPN PPTC-IC-9635EPN-D PPTC-IC-9635EPN-R No No No No Yes Yes Yes NA Female Relapse Relapse Second 19 19 Non-Hispanic African Cerebrum Cerebrum supratentorial; YAP1-C11ORF70 positive Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-IC-9811EPN-D-1.SNPFinal PPTC-IC-9811EPN-D yes PPTC-IC-9811EPN-D-human.bam NA PPTC-IC-9811EPN-D-human.bam aa99a1c202c517a59014112f756705f0 PPTC-IC-9811EPN-D-mouse.bam PPTC-IC-9811EPN-R-human.bam eee212747d94b7f0f4f3af3c052088b4 PPTC-IC-9811EPN-mouse.bam yes PPTC-IC-9811EPN.human.genes.fpkm_tracking PPTCIC9811EPN-D-PDX.bam c46e96593abca24fea647d0dc68e6601 PPTCIC9811EPN-R-PDX.bam 2d9a295632699f349ed3e8fbdf36db90 PPTC-IC-9811EPN-D-human PPTC-IC-9811EPN-D PPTC-IC-9811EPN-R PDOX P0114 IC-9811EPN Ependymoma PPTCIC9811EPN 60-PPTCIC9811EPN NA Ependymoma Ependymoma Ependymoma ST-EPN-RELA ST-EPN-RELA EPM CNS ependymal tumor Ependymoma other brain other brain Li, XN PPTC-IC-9811EPN PPTC-IC-9811EPN-D PPTC-IC-9811EPN-R No No No No Yes Yes Yes NA Male Relapse Relapse Second 3 years 3 Hispanic or Latino SouthAsianOrHispanic Cerebrum Cerebrum supratentorial; C11ORF95-RELA positive Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes, new DNA NA TCCRC RAG2 R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-10593ATRT-D-1.SNPFinal PPTC-ICb-10593ATRT-D yes PPTC-ICb-10593ATRT-D-human.bam NA PPTC-ICb-10593ATRT-D-human.bam ca3314f8d74a6800faf90383d3e4d4fe PPTC-ICb-10593ATRT-D-mouse.bam PPTC-ICb-10593ATRT-R-human.bam 13af3ec9f8b7a3dd0c4b686844466798 PPTC-ICb-10593ATRT-R-mouse.bam yes PPTC-ICb-10593ATRT-R.human.genes.fpkm_tracking PPTCICb10593ATRT-D-PDX.bam e2a7786ddb40d1ae90487fafd267a24f PPTCICb10593ATRT-R-PDX.bam b7a0e9b4c799899cae8565c62f9ce036 PPTC-ICb-10593ATRT-D-human PPTC-ICb-10593ATRT-D PPTC-ICb-10593ATRT-R PDOX P0115 ICb-10593ATRT ATRT PPTCICb10593ATRT 62-PPTCICb10593ATRT NA ATRT ATRT ATRT ATRT-SHH SHH ATRT CNS embryonal tumor ATRT embryonal brain rhabdoid brain Li, XN PPTC-ICb-10593ATRT PPTC-ICb-10593ATRT-D PPTC-ICb-10593ATRT-R No No No No Yes Yes Yes NA Male Relapse Relapse Second 6 months 0.5 Non-Hispanic African Cerebellum Cerebellum Ki67++, MGMT deleted, EMA+,INI-1+ SHH by pathology, Ki67++, EMA+,INI-1+, MGMT deleted Stage 4 Unknown Unknown SHH NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC RAG1tmiMom/J R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-0614EPN-D-1.SNPFinal PPTC-ICb-0614EPN-D yes PPTC-ICb-0614EPN-D-human.bam NA PPTC-ICb-0614EPN-D-human.bam b1b699976464cce0ddd587d507eaf79e PPTC-ICb-0614EPN-D-mouse.bam PPTC-ICb-0614EPN-R-human.bam 2affad65be0ad01ed825bb3d5ec4ef38 PPTC-ICb-0614EPN-R-mouse.bam yes PPTC-ICb-0614EPN-R.human.genes.fpkm_tracking PPTCICb0614EPN-D-PDX.bam 79884d4cfb730847a452e788b7fd7ab8 PPTCICb0614EPN-R-PDX.bam 0c8b58583e1da7a2ab8b422754e4f928 PPTC-ICb-0614EPN-D-human PPTC-ICb-0614EPN-D PPTC-ICb-0614EPN-R PDOX P0116 ICb-10614EPN Ependymoma PPTCICb0614EPN 60-PPTCICb0614EPN NA Ependymoma Ependymoma Ependymoma ST-EPN-YAP1 ST-EPN-YAP1 EPM CNS ependymal tumor Ependymoma other brain other brain Li, XN PPTC-ICb-0614EPN PPTC-ICb-0614EPN-D PPTC-ICb-0614EPN-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 5 years 5 Non-Hispanic European Cerebellum Cerebellum YAP1-C11ORF70 positive Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Name change requested from 0614 to 101614 NA TCCRC RAG2 R. Cerebrum NA
yes yes yes yes yes PPTC-IC-1078MB-D-1.SNPFinalReports.txt PPTC-IC-1078MB-D no NA NA NA NA PPTC-ICb-1078MB-R-human.bam 89734a1db6b62a3f4a930c31b84a4e9b PPTC-ICb-1078MB-R-mouse.bam yes PPTC-ICb-1078MB-R.human.genes.fpkm_tracking NA NA PPTCICb1078MB-R-PDX.bam ec6f444c67755d995c5d877dc32ef7f3 NA NA NA PDOX P0117 ICb-1078MB Medulloblastoma PPTCICb1078MB 64-PPTCICb1078MB NA Medulloblastoma Medulloblastoma Medulloblastoma MB-SHH SHH MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-ICb-1078MB NA PPTC-ICb-1078MB-R Yes Yes Yes No Yes Yes No NA Male Diagnosis Diagnosis First Unknown Unknown 11.8 Non-Hispanic European Cerebellum Cerebellum Aplastic, MYCN amplified, SHH by genetics/classifier Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested not to sequence NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-1140MB-D-2.SNPFinalReports.txt PPTC-ICb-1140MB-D no NA NA NA NA PPTC-ICb-1140MB-R-human.bam a77c64f9c20c672206b5d165bb5aaf43 PPTC-ICb-1140MB-R-mouse.bam yes PPTC-ICb-1140MB-R.human.genes.fpkm_tracking NA NA PPTCICb1140MB-R-PDX.bam 3b7e7196af1defd9f3b9fc8e7a772cc6 NA NA NA PDOX P0118 ICb-1140MB Medulloblastoma PPTCICb1140MB 64-PPTCICb1140MB NA Medulloblastoma Medulloblastoma Medulloblastoma MB-WNT WNT MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-ICb-1140MB NA PPTC-ICb-1140MB-R Yes Yes Yes No Yes Yes No NA Male Diagnosis Diagnosis First Unknown Unknown 6 Hispanic or Latino European Cerebellum Cerebellum Aplastic; WNT by classifier Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested not to sequence NA TCCRC nOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-1197MB-D-2.SNPFinalReports.txt PPTC-ICb-1197MB-D no NA NA NA NA PPTC-ICb-1197MB-R-human.bam 2a9e7c82c029ee0de1b85d289bb63dcf PPTC-ICb-1197MB-R-mouse.bam yes PPTC-ICb-1197MB-R.human.genes.fpkm_tracking NA NA PPTCICb1197MB-R-PDX.bam 638bdd45c684e068888227dcca694f7b NA NA NA PDOX P0119 ICb-1197MB Medulloblastoma PPTCICb1197MB 64-PPTCICb1197MB NA Medulloblastoma Medulloblastoma Medulloblastoma MB-Group3 Group3 MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-ICb-1197MB NA PPTC-ICb-1197MB-R Yes Yes Yes No Yes Yes No NA Male Diagnosis Diagnosis First Unknown Unknown 5 Non-Hispanic European Cerebellum Cerebellum Nodular, SHH by pathology, Group3 by classifier Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested not to sequence NA TCCRC RAG2 R. Cerebrum NA
yes no yes yes yes PPTC-ICb-1218ATRT-D-1.SNPFinal PPTC-ICb-1218ATRT-D yes PPTC-ICb-1218ATRT-D-human.bam NA PPTC-ICb-1218ATRT-D-human.bam 6b4bc1f7801acf0c011572d015efe70f PPTC-ICb-1218ATRT-D-mouse.bam NA NA NA no NA PPTCICb1218ATRT-D-PDX.bam 1e2ff94f56e2a8b347011b54203939a4 NA NA PPTC-ICb-1218ATRT-D-human PPTC-ICb-1218ATRT-D PPTC-ICb-1218ATRT-R PDOX P0120 ICb-1218ATRT ATRT PPTCICb1218ATRT 62-PPTCICb1218ATRT NA ATRT ATRT ATRT ATRT NA ATRT CNS embryonal tumor ATRT embryonal brain rhabdoid brain Li, XN PPTC-ICb-1218ATRT PPTC-ICb-1218ATRT-D NA No No No No No No Yes NA Female Diagnosis Diagnosis First 37 months 3.08 Non-Hispanic European Cerebellum Cerebellum Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes, new DNA NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes no NA yes PPTC-ICb-1338MB-D-human.bam NA PPTC-ICb-1338MB-D-human.bam b6e46b424d120e5f918dea2cde55520e PPTC-ICb-1338MB-D-mouse.bam PPTC-ICb-1338MB-R-human.bam 4305e6bfed40b702d59b7e656e5f94f0 PPTC-ICb-1338MB-R-mouse.bam yes PPTC-ICb-1338MB-R.human.genes.fpkm_tracking PPTCICb1338MB-D-PDX.bam c3af024757def98f4c8dec7dae6d690e PPTCICb1338MB-R-PDX.bam a3f71070a8c641bb9d2d2eb58540e4fb PPTC-ICb-1338MB-D-human PPTC-ICb-1338MB-D PPTC-ICb-1338MB-R PDOX P0121 ICb-1338MB Medulloblastoma PPTCICb1338MB 64-PPTCICb1338MB NA Medulloblastoma Medulloblastoma Medulloblastoma MB-SHH SHH MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-ICb-1338MB PPTC-ICb-1338MB-D PPTC-ICb-1338MB-R No No Yes No Yes Yes Yes NA Male Diagnosis Diagnosis First 6 months 0.5 Non-Hispanic NA Cerebellum Cerebellum GFAP+, KI67+ Nodular, SHH by pathology/genetics/classifier, GFAP+, KI67+, GAB1 mRNA upregulation by genetics Stage 4 Unknown Unknown SHH NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC RAG2 R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-1343ENB-D-1.SNPFinalReport.txt PPTC-ICb-1343ENB-D yes PPTC-ICb-1343ENB-D-human.bam NA PPTC-ICb-1343ENB-D-human.bam dbcf7d98465ed03c44b6fe95e2a516bf PPTC-ICb-1343ENB-D-mouse.bam PPTC-ICb-1343ENB-R-human.bam 98609f6f03275931c305c4ef41efd6de PPTC-ICb-1343ENB-R-mouse.bam yes PPTC-ICb-1343ENB-R.human.genes.fpkm_tracking PPTCICb1343ENB-D-PDX.bam 4128d44bd0beb4815d168115deead280 PPTCICb1343ENB-R-PDX.bam 6cc284df552d36325b8a737ed92b74e1 PPTC-ICb-1343ENB-D-human PPTC-ICb-1343ENB-D PPTC-ICb-1343ENB-R PDOX P0122 ICb-1343ENB Ependymoblastoma PPTCICb1343ENB 65-PPTCICb1343ENB NA ETMR ETMR Other CNS Embryonal ETMR ETMR ETANTR CNS embryonal tumor embryonal embryonal brain embryonal brain Li, XN PPTC-ICb-1343ENB PPTC-ICb-1343ENB-D PPTC-ICb-1343ENB-R No No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 7 months 0.58 Unknown SouthAsianOrHispanic Cerebellum Cerebellum C19MC amplification by genetics Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC RAG2 R. Cerebrum NA
yes no yes yes yes PPTCICb1487MB-1.SNPFinalReports.txt PPTCICb1487MB no NA NA NA NA NA NA NA yes PPTC-ICb-1487MB-R.human.genes.fpkm_tracking NA NA NA NA NA NA NA PDOX P0123 ICb-1487MB Medulloblastoma PPTCICb1487MB 64-PPTCICb1487MB NA Medulloblastoma Medulloblastoma Medulloblastoma MB-Group4 Group4 MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-ICb-1487MB NA NA Yes Yes Yes No Yes Yes No NA Male Diagnosis Diagnosis First Unknown Unknown 6.9 Non-Hispanic European Cerebellum Cerebellum Classic, CDK6 amplified, Group 4 by genetics Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested not to sequence NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-1494MB-D-1.SNPFinalReports.txt PPTC-ICb-1494MB-D no NA NA NA NA PPTC-ICb-1494MB-R-human.bam 7e8148dc64fe93f9c2e9bdc65aced6ca PPTC-ICb-1494MB-R-mouse.bam yes PPTC-ICb-1494MB-R.human.genes.fpkm_tracking NA 8b52d30b6ae9a7c1db5fb621d59d4943 PPTCICb1494MB-R-PDX.bam 818f3bb3ae6152cb4bacdab9e7b19313 NA NA NA PDOX P0124 ICb-1494MB Medulloblastoma PPTCICb1494MB 64-PPTCICb1494MB NA Medulloblastoma Medulloblastoma Medulloblastoma MB-Group3 Group3 MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-ICb-1494MB NA PPTC-ICb-1494MB-R Yes Yes Yes No Yes Yes No NA Female Diagnosis Diagnosis First Unknown Unknown 5.2 Unknown SouthAsianOrHispanic Cerebellum Cerebellum Aplastic, MYC amplified, Group 3 by genetics/classifier Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested not to sequence NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes no yes yes yes PPTCICb1572MB-1.SNPFinalReports.txt PPTCICb1572MB no NA NA NA NA NA NA NA yes PPTC-ICb-1572MB-R.human.genes.fpkm_tracking NA NA NA NA NA NA NA PDOX P0125 ICb-1572MB Medulloblastoma PPTCICb1572MB 64-PPTCICb1572MB NA Medulloblastoma Medulloblastoma Medulloblastoma Medulloblastoma NA MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-ICb-1572MB NA NA Yes Yes Yes No Yes Yes No NA Male Diagnosis Diagnosis First Unknown Unknown 14.8 Non-Hispanic European Cerebellum Cerebellum Large Cell; Unclassified Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested not to sequence NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-IC-1595MB-D-1.SNPFinalReport.txt PPTC-IC-1595MB-D no NA NA NA NA PPTC-ICb-1595MB-R-human.bam e7784f5b43a2f7518b478da646a553cb PPTC-ICb-1595MB-R-mouse.bam yes PPTC-ICb-1595MB-R.human.genes.fpkm_tracking NA NA PPTCICb1595MB-R-PDX.bam 64faf25f89f11dad95df9b2d47115cd6 NA NA NA PDOX P0126 ICb-1595MB Medulloblastoma PPTCICb1595MB 64-PPTCICb1595MB NA Medulloblastoma Medulloblastoma Medulloblastoma MB-Group3 Group3 MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-IC-1595MB NA PPTC-IC-1595MB-R Yes Yes No No Yes Yes No NA Male Diagnosis Diagnosis First Unknown Unknown 1.3 Hispanic or Latino SouthAsianOrHispanic Cerebellum Cerebellum Aplastic, MYC amplified, Group 3 by genetics/classifier Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested not to sequence NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-ICB-1744MB-D-1.SNPFinalReport.txt PPTC-ICB-1744MB-D yes PPTC-ICB-1744MB-D-human.bam NA PPTC-ICB-1744MB-D-human.bam a8096a8e31556d512a7d1c0972de60f1 PPTC-ICB-1744MB-D-mouse.bam PPTC-ICb-1744MB-R-human.bam f4a462f9f355dc050c6744073e0d25f0 PPTC-ICb-1744MB-R-mouse.bam yes PPTC-ICb-1744MB-R.human.genes.fpkm_tracking PPTCICB1744MB-D-PDX.bam df77a6ded90a413f58b321c067bd49b2 PPTCICB1744MB-R-PDX.bam 4fee14c699388744e98510a8370fa770 PPTC-ICB-1744MB-D-human PPTC-ICB-1744MB-D PPTC-ICB-1744MB-R PDOX P0127 ICB-1744MB Medulloblastoma PPTCICB1744MB 64-PPTCICB1744MB NA Medulloblastoma Medulloblastoma Medulloblastoma MB-Group3 Group3 MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-ICB-1744MB PPTC-ICB-1744MB-D PPTC-ICB-1744MB-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 3 years 3 Unknown European Cerebellum Cerebellum Unclassified, Grooup 3 by classifier Unknown Unknown Unknown G3 NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-2002EPN-D-2.SNPFinal PPTC-ICb-2002EPN-D yes PPTC-ICb-2002EPN-D-human.bam NA PPTC-ICb-2002EPN-D-human.bam 7a1b38e5c97431f389f90d6e770b6e94 PPTC-ICb-2002EPN-D-mouse.bam PPTC-ICb-2002EPN-R-human.bam 58e7704d2038a258a0efbcabb3608cc9 PPTC-ICb-2002EPN-R-mouse.bam yes PPTC-ICb-2002EPN-R.human.genes.fpkm_tracking PPTCICb2002EPN-D-PDX.bam 489ad038c882b9aa42ce982aab212e17 PPTCICb2002EPN-R-PDX.bam 3aeeb182bfe9f655258854658e54a675 PPTC-ICb-2002EPN-D-human PPTC-ICb-2002EPN-D PPTC-ICb-2002EPN-R PDOX P0128 ICb-2002EPN Ependymoma PPTCICb2002EPN 60-PPTCICb2002EPN NA Ependymoma Ependymoma Ependymoma PF-EPN-B PF-EPN-B EPM CNS ependymal tumor Ependymoma other brain other brain Li, XN PPTC-ICb-2002EPN PPTC-ICb-2002EPN-D PPTC-ICb-2002EPN-R Yes No No No Yes Yes Yes NA Male Relapse Relapse Second 14 years 14 Hispanic or Latino SouthAsianOrHispanic Cerebellum Cerebellum Aplastic Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes no NA yes PPTC-ICb-2123MB-D-human.bam NA PPTC-ICb-2123MB-D-human.bam 8769577bcdb48125c0953f5bdb77f5da PPTC-ICb-2123MB-D-mouse.bam PPTC-ICb-2123MB-R-human.bam b1ef7b908cfc55951a9297403b77dc46 PPTC-ICb-2123MB-R-mouse.bam yes PPTC-ICb-2123MB-R.human.genes.fpkm_tracking PPTCICb2123MB-D-PDX.bam fdec9d23ca68e110b32372d28dc5beae PPTCICb2123MB-R-PDX.bam d48847716ad541bc2a543bb8f2dcfb59 PPTC-ICb-2123MB-D-human PPTC-ICb-2123MB-D PPTC-ICb-2123MB-R PDOX P0129 ICb-2123MB Medulloblastoma PPTCICb2123MB 64-PPTCICb2123MB NA Medulloblastoma Medulloblastoma Medulloblastoma MB-SHH SHH MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-ICb-2123MB PPTC-ICb-2123MB-D PPTC-ICb-2123MB-R Yes No Yes No Yes Yes Yes NA Female Diagnosis Diagnosis First 6 months 0.5 Hispanic or Latino NA Cerebellum Cerebellum Nodular, SHH by pathology/classifier, MYCN non-amplified Unknown Unknown Unknown Not mutated SHH non-amp NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC RAG2 R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-2164MB-D-1.SNPFinalReport.txt PPTC-ICb-2164MB-D no NA NA NA NA PPTC-ICb-2164MB-R-human.bam 433b0b161cf2a9b5f2b787d504d3dd81 PPTC-ICb-2164MB-R-mouse.bam yes PPTC-ICb-2164MB-R.human.genes.fpkm_tracking NA NA PPTCICb2164MB-R-PDX.bam cade0191c6cdbb67f03c6164f31e5ecd NA NA NA PDOX P0130 ICb-2164MB Medulloblastoma PPTCICb2164MB 64-PPTCICb2164MB NA Medulloblastoma Medulloblastoma Medulloblastoma MB-Group3 Group3 MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-ICb-2164MB NA PPTC-ICb-2164MB-R Yes Yes No No Yes Yes No NA Male Diagnosis Diagnosis First Unknown Unknown 5 Unknown European Cerebellum Cerebellum Aplastic; Unclassified, Group 3 by classifier Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested not to sequence NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-2555MB-D-1.SNPFinalReport.txt PPTC-ICb-2555MB-D yes PPTC-ICb-2555MB-D-human.bam NA PPTC-ICb-2555MB-D-human.bam e9f115d9a9a21f4a54b80525bafef714 PPTC-ICb-2555MB-D-mouse.bam PPTC-ICb-2555MB-R-human.bam ce5c1242b1146ca0d1007b20d74bfc30 PPTC-ICb-2555MB-R-mouse.bam yes PPTC-ICb-2555MB-R.human.genes.fpkm_tracking PPTCICb2555MB-D-PDX.bam ae1fa38d41794c38c02adf29e14d4c0f PPTCICb2555MB-R-PDX.bam 6c91f26c2f3fee3efa12bf8fa1d0c537 PPTC-ICb-2555MB-D-human PPTC-ICb-2555MB-D PPTC-ICb-2555MB-R PDOX P0131 ICb-2555MB Medulloblastoma PPTCICb2555MB 64-PPTCICb2555MB NA Medulloblastoma Medulloblastoma Medulloblastoma MB-Group3 Group3 MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-ICb-2555MB PPTC-ICb-2555MB-D PPTC-ICb-2555MB-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 5 years 5 Hispanic or Latino SouthAsianOrHispanic Cerebellum Cerebellum GFAP+, P53+, KI67+ G3, GFAP+, P53+, KI67+; Group 3 by classifier Stage 4 Unknown Unknown G3 non-amp NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-3130MB-D-1.SNPFinalReport.txt PPTC-ICb-3130MB-D yes PPTC-ICb-3130MB-D-human.bam NA PPTC-ICb-3130MB-D-human.bam f815c8f3a5f406842138ce62c23449e0 PPTC-ICb-3130MB-D-mouse.bam PPTC-ICb-3130MB-R-human.bam 3f7548f8051e25044303f7426de391e9 PPTC-ICb-3130MB-R-mouse.bam yes PPTC-ICb-3130MB-R.human.genes.fpkm_tracking PPTCICb3130MB-D-PDX.bam 7a45f4ee75db27053826588ca56cfe18 PPTCICb3130MB-R-PDX.bam c0ce65e78caf3feb1bbe9c40085da193 PPTC-ICb-3130MB-D-human PPTC-ICb-3130MB-D PPTC-ICb-3130MB-R PDOX P0132 ICb-3130MB Medulloblastoma PPTCICb3130MB 64-PPTCICb3130MB NA Medulloblastoma Medulloblastoma Medulloblastoma MB-Group3 Group3 MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-ICb-3130MB PPTC-ICb-3130MB-D PPTC-ICb-3130MB-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 12 years 12 Non-Hispanic European Cerebellum Cerebellum P53+ G3, P53+; Group 3 by classifier Stage 4 Unknown Unknown G3 NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-3400MB-D-1.SNPFinalReports.txt PPTC-ICb-3400MB-D no NA NA NA NA PPTC-ICb-3400MB-R-human.bam 3e51d6f962ca0e58bcd08a292c9896e6 PPTC-ICb-3400MB-R-mouse.bam yes PPTC-ICb-3400MB-R.human.genes.fpkm_tracking NA NA PPTCICb3400MB-R-PDX.bam 9006ee9b6b41f281e7f7b59320d09b7c NA NA NA PDOX P0133 ICb-3400MB Medulloblastoma PPTCICb3400MB 64-PPTCICb3400MB NA Medulloblastoma Medulloblastoma Medulloblastoma MB-SHH SHH MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-ICb-3400MB NA PPTC-ICb-3400MB-R Yes Yes Yes No Yes Yes No NA Male Relapse Relapse Second Unknown Unknown 15 Hispanic or Latino SouthAsianOrHispanic Cerebellum Cerebellum Aplastic; SHH by classifier Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested not to sequence NA TCCRC RAG2 R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-5108ATRT-D-1.SNPFinal PPTC-ICb-5108ATRT-D yes PPTC-ICb-5108ATRT-D-human.bam NA PPTC-ICb-5108ATRT-D-human.bam dff67aa8925bd51d1e9bc15370b3ab4c PPTC-ICb-5108ATRT-D-mouse.bam PPTC-ICb-5108ATRT-R-human.bam 1ff7eabc805728dafccae9a3f9ae56ef PPTC-ICb-5108ATRT-R-mouse.bam yes PPTC-ICb-5108ATRT-R.human.genes.fpkm_tracking PPTCICb5108ATRT-D-PDX.bam f0c53dfb98df21fe07e144e2825ac119 PPTCICb5108ATRT-R-PDX.bam 0d5e79a6a7cb4ec9fcb51df5f186e00c PPTC-ICb-5108ATRT-D-human PPTC-ICb-5108ATRT-D PPTC-ICb-5108ATRT-R PDOX P0134 ICb-5108ATRT ATRT PPTCICb5108ATRT 62-PPTCICb5108ATRT NA ATRT ATRT ATRT ATRT-MYC MYC ATRT CNS embryonal tumor ATRT embryonal brain rhabdoid brain Li, XN PPTC-ICb-5108ATRT PPTC-ICb-5108ATRT-D PPTC-ICb-5108ATRT-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 1 years 1 Unknown African Cerebellum Cerebellum MYC by pathology and RNA Stage 4 Unknown Unknown MYC NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-5323EPN-D-2.SNPFinal PPTC-ICb-5323EPN-D yes PPTC-ICb-5323EPN-D-human.bam NA PPTC-ICb-5323EPN-D-human.bam 032236fc229d8609b17a4d0db2d4c1a7 PPTC-ICb-5323EPN-D-mouse.bam PPTC-ICb-5323EPN-R-human.bam ad1adc13fbc0ae043f9c2338d5333711 PPTC-ICb-5323EPN-R-mouse.bam yes PPTC-ICb-5323EPN-R.human.genes.fpkm_tracking PPTCICb5323EPN-D-PDX.bam 6f09385f7fffd3d98c3735056a55d44b PPTCICb5323EPN-R-PDX.bam 7e850ee4cf79fb32c7c9722bab46fcbc PPTC-ICb-5323EPN-D-human PPTC-ICb-5323EPN-D PPTC-ICb-5323EPN-R PDOX P0135 ICb-5323EPN Ependymoma PPTCICb5323EPN 60-PPTCICb5323EPN NA Ependymoma Ependymoma Ependymoma PF-EPN-A PF-EPN-A EPM CNS ependymal tumor Ependymoma other brain other brain Li, XN PPTC-ICb-5323EPN PPTC-ICb-5323EPN-D PPTC-ICb-5323EPN-R No No No No Yes Yes Yes NA Female Relapse Relapse Second 5 years 5 Non-Hispanic SouthAsianOrHispanic Cerebellum Cerebellum Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-5610MB-Cb-Cb-D-2.SNPFinalReport.txt PPTC-ICb-5610MB-Cb-Cb-D yes PPTC-ICb-5610MB-Cb-Cb-D-human.bam NA PPTC-ICb-5610MB-Cb-Cb-D-human.bam 1111c0fbf858e35d9710d5fb68566169 PPTC-ICb-5610MB-Cb-Cb-D-mouse.bam PPTC-ICb-5610MB-Cb-Cb-R-human.bam 905d1758f0632b6b398a8ac9230a964d PPTC-ICb-5610MB-Cb-Cb-R-mouse.bam yes PPTC-ICb-5610MB-Cb-Cb-R.human.genes.fpkm_tracking PPTCICb5610MB-D-PDX.bam 0df40921b607af838c63baee8570970e PPTCICb5610MB-R-PDX.bam f91e2204706730119aefb4efee1c0b44 PPTC-ICb-5610MB-Cb-Cb-D-human PPTC-ICb-5610MB-Cb-Cb-D PPTC-ICb-5610MB-Cb-Cb-R PDOX P0136 ICb-5610MB Medulloblastoma PPTCICb5610MB 64-PPTCICb5610MB NA Medulloblastoma Medulloblastoma Medulloblastoma MB-SHH SHH MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-ICb-5610MB-Cb-Cb PPTC-ICb-5610MB-Cb-Cb-D PPTC-ICb-5610MB-Cb-Cb-R No No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 13 years 13 Non-Hispanic European Cerebellum Cerebellum GFAP-, Large Cell, SHH by pathology/genetics/classifier, GFAP-, MYCN amplified by pathology, MYCN gain by genetics Unknown Unknown Unknown mutated SHH amp NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC RAG1tm1Mom/J R. Cerebrum NA
yes no yes yes yes PPTC-ICb-6753ATRT-D-1.SNPFinal PPTC-ICb-6753ATRT-D yes PPTC-ICb-6753ATRT-D-human.bam NA PPTC-ICb-6753ATRT-D-human.bam df9564c31049f56571385deaaf321932 PPTC-ICb-6753ATRT-D-mouse.bam NA NA NA no NA PPTCICb6753ATRT-D-PDX.bam d9e2b7ab596c62bcb3fb6180bd508ad5 NA NA PPTC-ICb-6753ATRT-D-human PPTC-ICb-6753ATRT-D PPTC-ICb-6753ATRT-R PDOX P0137 ICb-6753ATRT ATRT PPTCICb6753ATRT 62-PPTCICb6753ATRT NA ATRT ATRT ATRT ATRT-SHH SHH ATRT CNS embryonal tumor ATRT embryonal brain rhabdoid brain Li, XN PPTC-ICb-6753ATRT PPTC-ICb-6753ATRT-D NA No No No No No No Yes NA Female Diagnosis Diagnosis Third 1.5 years 1.5 Non-Hispanic European Cerebellum Cerebellum SHH by pathology Stage 4 Unknown Unknown SHH NA NA Unknown Unknown Unknown Unknown Unknown Yes, Partial, then new DNA NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-8008MB-D-1.SNPFinalReports.txt PPTC-ICb-8008MB-D no NA NA NA NA PPTC-ICb-8008MB-R-human.bam 867d2b0762b685d677b71a9403c8aaa1 PPTC-ICb-8008MB-R-mouse.bam yes PPTC-ICb-8008MB-R.human.genes.fpkm_tracking NA NA PPTCICb8008MB-R-PDX.bam 030621a90bd706dfbbcd53120540c6ff NA NA PPTCICb8008MB-R PDOX P0138 ICb-8008MB Medulloblastoma PPTCICb8008MB 64-PPTCICb8008MB NA Medulloblastoma Medulloblastoma Medulloblastoma MB-Group4 Group4 MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-ICb-8008MB NA PPTC-ICb-8008MB-R Yes Yes No No Yes Yes No NA Male Diagnosis Diagnosis First Unknown Unknown 10 Hispanic or Latino SouthAsianOrHispanic Cerebellum Cerebellum Aplastic; Group 4 by classifier Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested not to sequence NA TCCRC RAG2 R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-9508MB-D-1.SNPFinalReport.txt PPTC-ICb-9508MB-D yes PPTC-ICb-9508MB-D-human.bam NA PPTC-ICb-9508MB-D-human.bam 29359e6ba10bcc791614372c87761ccd PPTC-ICb-9508MB-D-mouse.bam PPTC-ICb-9508MB-R-human.bam fca71080b1a28c292e76dc01a9016e94 PPTC-ICb-9508MB-R-mouse.bam yes PPTC-ICb-9508MB-R.human.genes.fpkm_tracking PPTCICb9508MB-D-PDX.bam 53eb56e6eff7386c67094b94286106b9 PPTCICb9508MB-R-PDX.bam 108bb0e8018779eae56ca515fbc7513b PPTC-ICb-9508MB-D-human PPTC-ICb-9508MB-D PPTC-ICb-9508MB-R PDOX P0139 ICb-9508MB Medulloblastoma PPTCICb9508MB 64-PPTCICb9508MB NA Medulloblastoma Medulloblastoma Medulloblastoma MB-SHH SHH MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-ICb-9508MB PPTC-ICb-9508MB-D PPTC-ICb-9508MB-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First Unknown Unknown 0.9 Hispanic or Latino Mixed_or_Unknown Cerebellum Cerebellum SHH by classifier Stage 4 Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTCICb984MB-1.SNPFinalReports.txt PPTCICb984MB no NA NA NA NA PPTC-IC-984MB-R-human.bam 1bf988f5932fa0846cedb8aebfcefec2 PPTC-IC-984MB-R-mouse.bam yes PPTC-IC-984MB-R.human.genes.fpkm_tracking NA NA PPTCICb984MB-R-PDX.bam 1cef476a671e8263b6ec75008a27311e NA NA PPTCICb984MB-R PDOX P0140 ICb-984MB Medulloblastoma PPTCICb984MB 64-PPTCICb984MB NA Medulloblastoma Medulloblastoma Medulloblastoma MB-SHH SHH MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-IC-984MB NA PPTC-IC-984MB-R Yes Yes Yes No Yes Yes No NA Female Diagnosis Diagnosis First Unknown Unknown 7.8 Unknown European Cerebellum Cerebellum Aplastic, MYCN amplified, GLI2 amplified, SHH by genetics/classifier Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested not to sequence NA TCCRC RAG2 R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-9850PNET-D-1.SNPFinalReport.txt PPTC-ICb-9850PNET-D yes PPTC-ICb-9850PNET-D-human.bam NA PPTC-ICb-9850PNET-D-human.bam 4ab25b0ea0475c30f8de3cd0dc635732 PPTC-ICb-9850PNET-D-mouse.bam PPTC-ICb-9850PNET-R-human.bam b164969d8db6767ff57d3ef18c676c79 PPTC-ICb-9850PNET-R-mouse.bam yes PPTC-ICb-9850PNET-R.human.genes.fpkm_tracking PPTCICb9850PNET-D-PDX.bam f623482e21b125f326cba70e5fe8bd6c PPTCICb9850PNET-R-PDX.bam 7bbefd99a2132238a0026b58ef4fc731 PPTC-ICb-9850PNET-D-human PPTC-ICb-9850PNET-D PPTC-ICb-9850PNET-R PDOX P0105 ICb-9850PNET Primitive Neuronectomal tumors (PNET) PPTCICb9850PNET 65-PPTCICb9850PNET NA PNET CNS EFT-CIC Other CNS Embryonal CNS EFT-CIC CNS EFT-CIC EMBT CNS embryonal tumor embryonal embryonal brain embryonal brain Li, XN PPTC-ICb-9850PNET PPTC-ICb-9850PNET-D PPTC-ICb-9850PNET-R No No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 2 years 2 Hispanic or Latino SouthAsianOrHispanic Cerebellum Cerebellum SYN+,MAP+, P53+++,Ki67+, INI-1+ sPNET, SYN+,MAP+, P53+++,Ki67+, INI-1+; SMARCB1 hemizygous loss; SMARCB1 RNA expressed; CNS EFT-CIC Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Same patient as 22909PNET; primary NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-J1017MB-D-1.SNPFinalReport.txt PPTC-ICb-J1017MB-D no NA NA NA NA PPTC-ICb-J1017MB-R-human.bam 497dcefe65a2457b1d9da40f97dc3573 PPTC-ICb-J1017MB-R-mouse.bam yes PPTC-ICb-J1017MB-R.human.genes.fpkm_tracking NA NA PPTCICbJ1017MB-R-PDX.bam 87f4a3c190936c43eeded3a093d907dc NA NA PPTCICbJ1017MB-R PDOX P0141 ICb-J1017MB Medulloblastoma PPTCICbJ1017MB 64-PPTCICbJ1017MB NA Medulloblastoma Medulloblastoma Medulloblastoma MB-Group4 Group4 MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Li, XN PPTC-ICb-J1017MB NA PPTC-ICb-J1017MB-R Yes Yes Yes No Yes Yes No NA Male Relapse Relapse Second Unknown Unknown NA Unknown European Cerebellum Cerebellum Aplastic; Group 4 by classifier Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Requested not to sequence NA TCCRC RAG2 R. Cerebrum NA
yes yes yes yes yes PPTC-ICb-L1115ATRT-D-1.SNPFinal PPTC-ICb-L1115ATRT-D yes PPTC-ICb-L1115ATRT-D-human.bam NA PPTC-ICb-L1115ATRT-D-human.bam 812b1e48f517531179072bd5652f53e8 PPTC-ICb-L1115ATRT-D-mouse.bam PPTC-ICb-L1115ATRT-R-human.bam a66a566137fdb3a82dfa4690880b6e2a PPTC-ICb-L1115ATRT-R-mouse.bam yes PPTC-ICb-L1115ATRT-R.human.genes.fpkm_tracking PPTCICbL1115ATRT-D-PDX.bam 4174c5478a3316502bc0796022b70467 PPTCICbL1115ATRT-R-PDX.bam ca8c0e4b19560d03b7c6b045f14eeee2 PPTC-ICb-L1115ATRT-D-human PPTC-ICb-L1115ATRT-D PPTC-ICb-L1115ATRT-R PDOX P0142 ICb-L1115ATRT ATRT PPTCICbL1115ATRT 62-PPTCICbL1115ATRT NA ATRT ATRT ATRT ATRT-SHH SHH ATRT CNS embryonal tumor ATRT embryonal brain rhabdoid brain Li, XN PPTC-ICb-L1115ATRT PPTC-ICb-L1115ATRT-D PPTC-ICb-L1115ATRT-R No No No No Yes Yes Yes NA Male Unknown Unknown Third 3 months 0.25 Unknown European Cerebellum Cerebellum SHH by pathology Stage 4 Unknown Unknown SHH NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC NOD.129S7(B6)-Rag1tm1Mom/J R. Cerebrum NA
yes yes yes yes no NA yes PPTC-ICb-S1129MB-D-human.bam NA PPTC-ICb-S1129MB-D-human.bam 0ccc16fd593b9c2499b39869c40bc034 PPTC-ICb-S1129MB-D-mouse.bam PPTC-ICb-S1129MB-R-human.bam 30cd0f833c730c04d6e06d5d6f240348 PPTC-ICb-S1129MB-R-mouse.bam yes PPTC-ICb-S1129MB-R.human.genes.fpkm_tracking PPTCICbS1129MB-D-PDX.bam cac2bd4a4bdff005eb914a583cd27cca PPTCICbS1129MB-R-PDX.bam 4a5b012910abd76cd7f8ed8a0e1172cc PPTC-ICb-S1129MB-D-human PPTC-ICb-S1129MB-D PPTC-ICb-S1129MB-R PDOX P0143 ICb-S1129MB ETMR PPTCICbS1129MB 64-PPTCICbS1129MB NA ETMR ETMR Other CNS Embryonal ETMR ETMR ETANTR CNS embryonal tumor embryonal embryonal brain embryonal brain Li, XN PPTC-ICb-S1129MB PPTC-ICb-S1129MB-D PPTC-ICb-S1129MB-R No No No No Yes Yes No NA Female Relapse Relapse Second 17 months 1.42 Unknown NA Cerebellum Cerebellum Anaplastic, LIN28A upregulation by genetics, ETMR by genetics Stage 4 Unknown Unknown ETMR NA NA Unknown Unknown Unknown Unknown Unknown Yes NA TCCRC RAG2 R. Cerebrum NA
yes yes yes yes yes PPTC-IRS56-D-1.SNPFinalReports.txt PPTC-IRS56-D yes PPTC-IRS56-D-human.bam NA PPTC-IRS56-D-human.bam 49e63f486d82ad5fb1b6643dd52bf406 PPTC-IRS56-D-mouse.bam PPTC-IRS56-R-human.bam f1f7ce8b43f86a1542a0ac7321ec55d7 PPTC-IRS56-R-mouse.bam yes PPTC-IRS56-R.human.genes.fpkm_tracking PPTC-IRS56-D.PDX.bam PPTCIRS56-R-PDX.bam f10948e744f3bbeeb7e1b2b76adc207a PPTC-IRS56-D-human PPTC-IRS56-D PPTC-IRS56-R XG P0144 IRS-56 ERMS PPTCIRS56 80-PPTCIRS56 TARGET-80-PPT053 Rhabdomyosarcoma Fusion- RMS Fusion- RMS Fusion- RMS NA ERMS Soft sarcoma Rhabdomyosarcoma Soft sarcoma sarcoma erms solid Houghton PPTC-IRS56 PPTC-IRS56-D PPTC-IRS56-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 3 years 3 Unknown African R. Buttock R. Buttock Embryonal Unknown TARGET-80-PPT053-60A resequenced Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes B14 NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-IRS-68-D-1.SNPFinalReports.txt PPTC-IRS-68-D yes TARGET-80-PPT056-60A-01D-human.bam NA TARGET-80-PPT056-60A-01D-human.bam 4d5658b4178e9c1998e3b164029d3074 TARGET-80-PPT056-60A-01D-mouse.bam PPTC-IRS-68-R-human.bam 32c0c1ff1ea28b18d8bf2a6ababc9114 PPTC-IRS-68-R-mouse.bam yes PPTC-IRS-68-R.human.genes.fpkm_tracking TARGET-80-PPT056-60A-01D.PDX.bam PPTCIRS68-R-PDX.bam baa914ae998212b301d6fabc1ccdea1d TARGET-80-PPT056-60A-01D-human TARGET-80-PPT056-60A-01D TARGET-80-PPT056-60A-01R XG P0145 IRS-68 ERMS PPTCIRS68 80-PPTCIRS68 TARGET-80-PPT056 Rhabdomyosarcoma Fusion- RMS Fusion- RMS Fusion- RMS NA ERMS Soft sarcoma Rhabdomyosarcoma Soft sarcoma sarcoma erms solid Houghton PPTC-IRS-68 PPTC-IRS-68-D PPTC-IRS-68-R No Yes No No Yes Yes No No info Male Diagnosis Diagnosis First 13 years 13 Unknown European Shoulder Shoulder Embryonal Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes B21 NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-KT-10-D-1.SNPFinalReports.txt PPTC-KT-10-D yes TARGET-50-PPT025-60A-01D-human.bam NA TARGET-50-PPT025-60A-01D-human.bam fd6d66125088981056ca6e2a72c0e35e TARGET-50-PPT025-60A-01D-mouse.bam PPTC-KT-10-R-human.bam 0bc3b177608d0fd9d99c7ad442d1b84c PPTC-KT-10-R-mouse.bam yes PPTC-KT-10-R.human.genes.fpkm_tracking TARGET-50-PPT025-60A-01D.PDX.bam PPTCKT10-R-PDX.bam 5d6436181c1948a92879a8a1ffee5aed TARGET-50-PPT025-60A-01D-human TARGET-50-PPT025-60A-01D TARGET-50-PPT025-60A-01R XG P0146 KT-10 Wilms tumor PPTCKT10 50-PPTCKT10 TARGET-50-PPT025 Wilms Wilms Wilms Wilms NA WT Renal tumor Wilms Renal renal renal solid Houghton PPTC-KT-10 PPTC-KT-10-D PPTC-KT-10-R No Yes Yes No Yes Yes No Kidney/Rhabdoid Male Diagnosis Diagnosis First 81 months 6.75 African American African L. Kidney L. Kidney FH Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes A2 NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-KT-11-D-1.SNPFinalReports.txt PPTC-KT-11-D yes TARGET-50-PPT026-60A-01D-human.bam NA TARGET-50-PPT026-60A-01D-human.bam c91cece24ec9080fbdea7c8fba74a279 TARGET-50-PPT026-60A-01D-mouse.bam PPTC-KT-11-R-human.bam 8ffc5870ec3ccf1e224666d47817235e PPTC-KT-11-R-mouse.bam yes PPTC-KT-11-R.human.genes.fpkm_tracking TARGET-50-PPT026-60A-01D.PDX.bam PPTCKT11-R-PDX.bam 875f755b8201a2e01de9da10462f8f9b TARGET-50-PPT026-60A-01D-human TARGET-50-PPT026-60A-01D TARGET-50-PPT026-60A-01R XG P0147 KT-11 Wilms tumor PPTCKT11 50-PPTCKT11 TARGET-50-PPT026 Wilms Wilms Wilms Wilms NA WT Renal tumor Wilms Renal renal renal solid Houghton PPTC-KT-11 PPTC-KT-11-D PPTC-KT-11-R No Yes Yes No Yes Yes No Kidney/Rhabdoid Female Diagnosis Diagnosis First 58 months 4.83 African American African R. Kidney R. Kidney FH Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes A3 NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-KT-12-D-1.SNPFinalReports.txt PPTC-KT-12-D yes TARGET-52-PPT002-60A-01D-human.bam NA TARGET-52-PPT002-60A-01D-human.bam 0240df0479e99fb4a284e39a15cca95d TARGET-52-PPT002-60A-01D-mouse.bam PPTC-KT-12-R-human.bam cc7699e4ee94fa2d386ffd417a32752c PPTC-KT-12-R-mouse.bam yes PPTC-KT-12-R.human.genes.fpkm_tracking TARGET-52-PPT002-60A-01D.PDX.bam PPTCKT12-R-PDX.bam 91e7884ec61ed769d3de1551fc0e1004 TARGET-52-PPT002-60A-01D-human TARGET-52-PPT002-60A-01D TARGET-52-PPT002-60A-01R XG P0148 KT-12 Rhabdoid tumor PPTCKT12 52-PPTCKT12 TARGET-52-PPT002 ATRT ATRT ATRT ATRT-MYC MYC ATRT CNS embryonal tumor ATRT embryonal brain rhabdoid brain Houghton PPTC-KT-12 PPTC-KT-12-D PPTC-KT-12-R No Yes Yes No Yes Yes No Kidney/Rhabdoid Male Diagnosis Diagnosis First 6 months 0.5 European European Ventricular mass Ventricular mass MYC by RNA Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes A7 NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-KT-13-D-1.SNPFinalReports.txt PPTC-KT-13-D yes TARGET-50-PPT027-60A-01D-human.bam NA TARGET-50-PPT027-60A-01D-human.bam 349ce331715b245cf58e203e84675cb5 TARGET-50-PPT027-60A-01D-mouse.bam PPTC-KT-13-R-human.bam 642d1a6b12fac6ec8ae8f4b237f96643 PPTC-KT-13-R-mouse.bam yes PPTC-KT-13-R.human.genes.fpkm_tracking TARGET-50-PPT027-60A-01D.PDX.bam PPTCKT13-R-PDX.bam ab558a3953ef7541b9972c2ddef56db8 TARGET-50-PPT027-60A-01D-human TARGET-50-PPT027-60A-01D TARGET-50-PPT027-60A-01R XG P0149 KT-13 Wilms tumor PPTCKT13 50-PPTCKT13 TARGET-50-PPT027 Wilms Wilms Wilms Wilms NA WT Renal tumor Wilms Renal renal renal solid Houghton PPTC-KT-13 PPTC-KT-13-D PPTC-KT-13-R No Yes Yes No Yes Yes No Kidney/Rhabdoid Female Diagnosis Diagnosis First 3 years 3 European European R. Kidney R. Kidney Diffuse Anaplasia Diffuse Anaplasia Unknown Unknown No Prior Tx Mutant G to A transition @778 causing a Cys to Tyr AA change @ 176 NA NA Unknown Unknown Unknown Unknown Unknown Yes A4 NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-KT-14-D-1.SNPFinalReports.txt PPTC-KT-14-D yes TARGET-52-PPT003-60A-01D-human.bam NA TARGET-52-PPT003-60A-01D-human.bam a182aafee851376c2e4353e798a68147 TARGET-52-PPT003-60A-01D-mouse.bam PPTC-KT-14-R-human.bam b7f68a07f19b1dd281aea891e84dd94a PPTC-KT-14-R-mouse.bam yes PPTC-KT-14-R.human.genes.fpkm_tracking TARGET-52-PPT003-60A-01D.PDX.bam PPTCKT14-R-PDX.bam b2fc4d71416d9161062db3f9cba0074e TARGET-52-PPT003-60A-01D-human TARGET-52-PPT003-60A-01D TARGET-52-PPT003-60A-01R XG P0150 KT-14 Rhabdoid tumor PPTCKT14 52-PPTCKT14 TARGET-52-PPT003 Extracranial Rhabdoid Extracranial Rhabdoid Extracranial Rhabdoid Extracranial Rhabdoid NA ATRT CNS embryonal tumor Extracranial Rhabdoid embryonal brain rhabdoid brain Houghton PPTC-KT-14 PPTC-KT-14-D PPTC-KT-14-R No Yes Yes No Yes Yes No Kidney/Rhabdoid Male Relapse Relapse Second 202 months 16.83 Unknown European Unknown Kidney Not noted Unknown Unknown Unknown Wild-type Polymorphism @466 [C]. NA NA Unknown Unknown Unknown Unknown Unknown Yes A8 NCH NA
yes yes yes yes yes PPTC-KT-18-D.SNPFinalReports.txt PPTC-KT-18-D yes PPTCKT18-D-human.bam FALSE PPTC-KT-18-D-human.bam 90de31fd1787d4ac3f02271f530060ad PPTC-KT-18-D-mouse.bam PPTC-KT-18-R-human.bam 89372a368920fb10ee7429c71eb4c7d2 PPTC-KT-18-R-mouse.bam yes PPTC-KT-18-R.human.genes.fpkm_tracking PPTCKT18-D-PDX.bam 2a1dc5ae3c67be6ae0b809883d35ff91 PPTCKT18-R-PDX.bam 862de79c93803035bc28535a48deb103 PPTC-KT-18-D-human PPTC-KT-18-D PPTC-KT-18-R PDX P0151 KT-18 Wilms tumor PPTCKT18 50-PPTCKT18 NA Wilms Wilms Wilms Wilms NA WT Renal tumor Wilms Renal renal renal solid Houghton PPTC-KT-18 PPTC-KT-18-D PPTC-KT-18-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 5 years 5 Unknown European R. Kidney R. Kidney Diffuse Anaplasia Diffuse Anaplasia Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC NA
yes no yes yes no NA yes TARGET-50-PPT024-60A-01D-human.bam NA TARGET-50-PPT024-60A-01D-human.bam 987406092c75f8ba65c7aa0ea7f1cd3b TARGET-50-PPT024-60A-01D-mouse.bam NA NA NA no NA TARGET-50-PPT024-60A-01D.PDX.bam NA NA TARGET-50-PPT024-60A-01D-human TARGET-50-PPT024-60A-01D NA XG P0152 KT-5 Wilms tumor PPTCKT5 50-PPTCKT5 TARGET-50-PPT024 Wilms Wilms Wilms Wilms NA WT Renal tumor Wilms Renal renal renal solid Houghton PPTC-KT-5 PPTC-KT-5-D NA No Yes Yes No No No No Kidney/Rhabdoid Male Diagnosis Diagnosis First 6 years 6 European NA Kidney Kidney Nuclear unrest Stage 3 Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes A9 NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-KT-6-D.SNPFinalReports.txt PPTC-KT-6-D yes PPTC-KT-6-D-human.bam NA PPTC-KT-6-D-human.bam 4bf1264a7615a004da638803e03f0495 PPTC-KT-6-D-mouse.bam PPTC-KT-6-R-human.bam 279b7aec030d6e78d5074c2a1940341b PPTC-KT-6-R-mouse.bam yes PPTC-KT-6-R.human.genes.fpkm_tracking PPTC-KT-6-D.PDX.bam PPTCKT6-R-PDX.bam fe29542870a29c1f12f21b3f3c825406 PPTC-KT-6-D-human PPTC-KT-6-D PPTC-KT-6-R PDX P0153 KT-6 Wilms tumor PPTCKT6 50-PPTCKT6 NA Wilms Wilms Wilms Wilms NA WT Renal tumor Wilms Renal renal renal solid Houghton PPTC-KT-6 PPTC-KT-6-D PPTC-KT-6-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First Unknown Unknown NA Unknown African Kidney Kidney Not noted Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-KT-8-D-1.SNPFinalReports.txt PPTC-KT-8-D yes TARGET-52-PPT028-60A-01D-human.bam NA TARGET-52-PPT028-60A-01D-human.bam 110f49c6f15f26f34080cf29a3918f07 TARGET-52-PPT028-60A-01D-mouse.bam PPTC-KT-8-R-human.bam 494a06376cc0cac5553dc48f5fbdd569 PPTC-KT-8-R-mouse.bam yes PPTC-KT-8-R.human.genes.fpkm_tracking TARGET-52-PPT028-60A-01D.PDX.bam PPTCKT8-R-PDX.bam 1de1cf7ddacb1f96a96595f49d337685 TARGET-52-PPT028-60A-01D-human TARGET-52-PPT028-60A-01D TARGET-52-PPT028-60A-01R XG P0154 KT-8 Wilms tumor PPTCKT8 50-PPTCKT8 TARGET-52-PPT028 Wilms Wilms Wilms Wilms NA WT Renal tumor Wilms Renal renal renal solid Houghton PPTC-KT-8 PPTC-KT-8-D PPTC-KT-8-R No Yes No No Yes Yes No NA Male Diagnosis Diagnosis First Unknown Unknown NA Unknown European L. Kidney L. Kidney Not noted Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes TB00-1006 NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-KT-9-D.SNPFinalReports.txt PPTC-KT-9-D yes PPTCKT9-D-human.bam FALSE PPTC-KT-9-D-human.bam a74d618bb542438bc13306f4da835972 PPTC-KT-9-D-mouse.bam PPTC-KT-9-R-human.bam 85af1a3e05aaa2aaa50d6ad0d6fc4fa7 PPTC-KT-9-R-mouse.bam yes PPTC-KT-9-R.human.genes.fpkm_tracking PPTCKT9-D-PDX.bam 54744df6793610c2c0f0734edb954527 PPTCKT9-R-PDX.bam e19f58b8aa9744e9aa4a8e270d52bb1c PPTC-KT-9-D-human PPTC-KT-9-D PPTC-KT-9-R PDX P0155 KT-9 Wilms tumor PPTCKT9 50-PPTCKT9 NA Wilms Wilms Wilms Wilms NA WT Renal tumor Wilms Renal renal renal solid Houghton PPTC-KT-9 PPTC-KT-9-D PPTC-KT-9-R No No No No Yes Yes Yes NA Male Post-treatment Post-treatment Third 9 years 9 Unknown African Unknown Bilateral Diffuse Anaplasia Diffuse Anaplasia Unknown Unknown Ifosfamide/Carboplatin/etoposide NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC NA
yes yes yes yes yes PPTC-AF16-XTP1-B-1-0-D-1.SNPFinalReports.txt PPTC-AF16-XTP1-B-1-0-D yes PPTC-AF16-XTP1-B-1-0-D-human.bam NA PPTC-AF16-XTP1-B-1-0-D-human.bam 4888aac2344692aa494fde003b0ee67a PPTC-AF16-XTP1-B-1-0-D-mouse.bam PPTC-MLL-1-R-human.bam 610a2260265edb388969a9651e64a76b PPTC-MLL-1-R-mouse.bam yes PPTC-MLL-1-R.human.genes.fpkm_tracking PPTC-AF16-XTP1-B-1-0-D.PDX.bam PPTC-MLL-1-R.PDX.bam PPTC-AF16-XTP1-B-1-0-D-human PPTC-AF16-XTP1-B-1-0-D PPTC-AF16-XTP1-B-1-0-R XG P0156 MLL-1 MLL-ALL PPTCMLL1 10-PPTCMLL1 TARGET-10-PPT102 ALL MLL-ALL MLL-ALL MLL-ALL NA ALAL ALL ALL leukemia leukemia MLL-ALL leukemia Lock PPTC-AF16-XTP1-B-1-0 PPTC-AF16-XTP1-B-1-0-D PPTC-AF16-XTP1-B-1-0-R No No Yes Yes No No No ALL Female Diagnosis Diagnosis First <12 months 0.92 Unknown Mixed_or_Unknown Unknown Bone marrow t(1;11), MLL-EPS15 Unknown Unknown No Prior Tx NA t(1;11), MLL-EPS15 Unknown Unknown Unknown Unknown Unknown Yes Infant MLL-ALL PPTCAF16XTP1B10;10-PPTCAF16XTP1B10 G18 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 44 Yes (SNP) 42 120 4
yes yes yes yes yes PPTC-MLL-14-D-1.SNPFinalReports.txt PPTC-MLL-14-D yes TARGET-10-PPT109-60A-01D-human.bam NA TARGET-10-PPT109-60A-01D-human.bam 22011aff3f741d065cc9ace6aa4be150 TARGET-10-PPT109-60A-01D-mouse.bam PPTC-MLL-14-R-human.bam 054a8da6e1f7d87c24fcaaadde3d352f PPTC-MLL-14-R-mouse.bam yes PPTC-MLL-14-R.human.genes.fpkm_tracking TARGET-10-PPT109-60A-01D.PDX.bam PPTCMLL14-R-PDX.bam d18125264f09f200cfb894617555deb9 TARGET-10-PPT109-60A-01D-human TARGET-10-PPT109-60A-01D TARGET-10-PPT109-60A-01R PDX P0157 MLL-14 MLL-ALL PPTCMLL14 10-PPTCMLL14 TARGET-10-PPT109 ALL MLL-ALL MLL-ALL MLL-ALL NA ALAL ALL ALL leukemia leukemia MLL-ALL leukemia Lock PPTC-MLL-14 PPTC-MLL-14-D PPTC-MLL-14-R Yes Yes Yes No Yes Yes No ALL Female Diagnosis Diagnosis First 2 months 0.17 Unknown European Unknown Bone marrow t(11;19), MLL-MLLT1 Unknown Unknown No Prior Tx NA t(11;19), MLL-MLLT1 Unknown Unknown Unknown Unknown Unknown Yes, Partial Infant MLL-ALL G24 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein Unknown Yes (SNP) - ref is PDX 2o Unknown 33 5
yes yes yes yes yes PPTC-MLL-2-D-1.SNPFinalReports.txt PPTC-MLL-2-D yes TARGET-10-PPT103-60A-01D-human.bam NA TARGET-10-PPT103-60A-01D-human.bam 36247ae433c43f3c13f213cf9bb307c0 TARGET-10-PPT103-60A-01D-mouse.bam PPTC-MLL-2-R-human.bam e373c149ea170b331789d2dcb2109c56 PPTC-MLL-2-R-mouse.bam yes PPTC-MLL-2-R.human.genes.fpkm_tracking TARGET-10-PPT103-60A-01D.PDX.bam PPTCMLL2-R-PDX.bam c4f07a9c49952678065f734a4aab8a9e TARGET-10-PPT103-60A-01D-human TARGET-10-PPT103-60A-01D TARGET-10-PPT103-60A-01R PDX P0158 MLL-2 MLL-ALL PPTCMLL2 10-PPTCMLL2 TARGET-10-PPT103 ALL MLL-ALL MLL-ALL MLL-ALL NA ALAL ALL ALL leukemia leukemia MLL-ALL leukemia Lock PPTC-MLL-2 PPTC-MLL-2-D PPTC-MLL-2-R Yes Yes Yes No Yes Yes No ALL Male Diagnosis Diagnosis First <12 months 0.92 Unknown European Unknown Peripheral blood t(4;11), MLL-AFF1 Unknown Unknown No Prior Tx NA t(4;11), MLL-AFF1 Unknown Unknown Unknown Unknown Unknown Yes Infant MLL-ALL G19 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 64 Yes (SNP) 68 80 7
yes yes yes yes yes PPTC-MLL-3-D-1.SNPFinalReports.txt PPTC-MLL-3-D yes TARGET-10-PPT104-60A-01D-human.bam NA TARGET-10-PPT104-60A-01D-human.bam 7330c7f9fe203809e8e2c735372f78fd TARGET-10-PPT104-60A-01D-mouse.bam PPTC-MLL-3-R-human.bam a6250f232109d96f6b9d1e3464ab6e54 PPTC-MLL-3-R-mouse.bam yes PPTC-MLL-3-R.human.genes.fpkm_tracking TARGET-10-PPT104-60A-01D.PDX.bam PPTCMLL3-R-PDX.bam 369e01aedb8b8975475dbfe2148d765a TARGET-10-PPT104-60A-01D-human TARGET-10-PPT104-60A-01D TARGET-10-PPT104-60A-01R PDX P0159 MLL-3 MLL-ALL PPTCMLL3 10-PPTCMLL3 TARGET-10-PPT104 ALL MLL-ALL MLL-ALL MLL-ALL NA ALAL ALL ALL leukemia leukemia MLL-ALL leukemia Lock PPTC-MLL-3 PPTC-MLL-3-D PPTC-MLL-3-R Yes Yes Yes No Yes Yes No ALL Male Diagnosis Diagnosis First <12 months 0.92 Unknown European Unknown Bone marrow t(11;17), MLL-GAS7 Unknown Unknown No Prior Tx NA t(11;17), MLL-GAS7 Unknown Unknown Unknown Unknown Unknown Yes Infant MLL-ALL G20 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 156 Yes (SNP) - ref is PDX 1o 81 53 6
yes yes yes yes yes PPTC-MLL-5-D-1.SNPFinalReports.txt PPTC-MLL-5-D yes TARGET-10-PPT105-60A-01D-human.bam NA TARGET-10-PPT105-60A-01D-human.bam 3fc6e0a2ea1a8ac5256e1ced41d444b1 TARGET-10-PPT105-60A-01D-mouse.bam PPTC-MLL-5-R-human.bam 6b6787c868bc53a8ea03c3d3043316c5 PPTC-MLL-5-R-mouse.bam yes PPTC-MLL-5-R.human.genes.fpkm_tracking TARGET-10-PPT105-60A-01D.PDX.bam PPTCMLL5-R-PDX.bam 22f32884b33c35e162e78e0b21a71865 TARGET-10-PPT105-60A-01D-human TARGET-10-PPT105-60A-01D TARGET-10-PPT105-60A-01R PDX P0160 MLL-5 MLL-ALL PPTCMLL5 10-PPTCMLL5 TARGET-10-PPT105 ALL MLL-ALL MLL-ALL MLL-ALL NA ALAL ALL ALL leukemia leukemia MLL-ALL leukemia Lock PPTC-MLL-5 PPTC-MLL-5-D PPTC-MLL-5-R Yes Yes Yes No Yes Yes No ALL Male Diagnosis Diagnosis First <12 months 0.92 Unknown European Unknown Peripheral blood t(10;11), MLL-MLLT10 Unknown Unknown No Prior Tx NA t(10;11), MLL-MLLT10 Unknown Unknown Unknown Unknown Unknown Yes Infant MLL-ALL G21 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 33 Yes (SNP) - ref is PDX 1o 24 26 5
yes yes yes yes yes PPTC-MLL-6-D-1.SNPFinalReports.txt PPTC-MLL-6-D yes TARGET-10-PPT106-60A-01D-human.bam NA TARGET-10-PPT106-60A-01D-human.bam a860a249a54eab8e1ce63ce10ac060e0 TARGET-10-PPT106-60A-01D-mouse.bam PPTC-MLL-6-R-human.bam df669fa43bebdda12cc58f9d17b4a6f4 PPTC-MLL-6-R-mouse.bam yes PPTC-MLL-6-R.human.genes.fpkm_tracking TARGET-10-PPT106-60A-01D.PDX.bam PPTCMLL6-R-PDX.bam f4de23ed09c72f98fa195cfd63210286 TARGET-10-PPT106-60A-01D-human TARGET-10-PPT106-60A-01D TARGET-10-PPT106-60A-01R PDX P0161 MLL-6 MLL-ALL PPTCMLL6 10-PPTCMLL6 TARGET-10-PPT106 ALL MLL-ALL MLL-ALL MLL-ALL NA ALAL ALL ALL leukemia leukemia MLL-ALL leukemia Lock PPTC-MLL-6 PPTC-MLL-6-D PPTC-MLL-6-R Yes Yes Yes No Yes Yes No ALL Male Diagnosis Diagnosis First <12 months 0.92 Unknown European Unknown Bone marrow t(11;19), MLL-MLLT1 Unknown Unknown No Prior Tx NA t(11;19), MLL-MLLT1 Unknown Unknown Unknown Unknown Unknown Yes Infant MLL-ALL G22 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 57 Yes (SNP) 49 58 5
yes yes yes yes yes PPTC-MLL-7-D-1.SNPFinalReports.txt PPTC-MLL-7-D yes TARGET-10-PPT107-60A-01D-human.bam NA TARGET-10-PPT107-60A-01D-human.bam 3009bf87fde97c129f11c52ea8c3ac1c TARGET-10-PPT107-60A-01D-mouse.bam PPTC-MLL-7-R-human.bam 40b591da20d7b887bae546516084ae4f PPTC-MLL-7-R-mouse.bam yes PPTC-MLL-7-R.human.genes.fpkm_tracking TARGET-10-PPT107-60A-01D.PDX.bam PPTCMLL7-R-PDX.bam bebd18468f69507b843029333d4a7103 TARGET-10-PPT107-60A-01D-human TARGET-10-PPT107-60A-01D TARGET-10-PPT107-60A-01R PDX P0162 MLL-7 MLL-ALL PPTCMLL7 10-PPTCMLL7 TARGET-10-PPT107 ALL MLL-ALL MLL-ALL MLL-ALL NA ALAL ALL ALL leukemia leukemia MLL-ALL leukemia Lock PPTC-MLL-7 PPTC-MLL-7-D PPTC-MLL-7-R Yes Yes Yes No Yes Yes No ALL Male Diagnosis Diagnosis First <12 months 0.92 Unknown Mixed_or_Unknown Unknown Peripheral blood t(4;11), MLL-AFF1 Unknown Unknown No Prior Tx NA t(4;11), MLL-AFF1 Unknown Unknown Unknown Unknown Unknown Yes Infant MLL-ALL G15 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 81 Yes (SNP) Negative 48 53 5
yes yes yes yes yes PPTC-MLL-8-D-1.SNPFinalReports.txt PPTC-MLL-8-D yes TARGET-10-PPT108-60A-01D-human.bam NA TARGET-10-PPT108-60A-01D-human.bam 868a8562403743745ef1103ee1839d28 TARGET-10-PPT108-60A-01D-mouse.bam PPTC-MLL-8-R-human.bam 0a0f56af0947843902e99380e79c6f40 PPTC-MLL-8-R-mouse.bam yes PPTC-MLL-8-R.human.genes.fpkm_tracking TARGET-10-PPT108-60A-01D.PDX.bam PPTCMLL8-R-PDX.bam c7057d01d6feed77c6cd7ee65b727c33 TARGET-10-PPT108-60A-01D-human TARGET-10-PPT108-60A-01D TARGET-10-PPT108-60A-01R PDX P0163 MLL-8 MLL-ALL PPTCMLL8 10-PPTCMLL8 TARGET-10-PPT108 ALL MLL-ALL MLL-ALL MLL-ALL NA ALAL ALL ALL leukemia leukemia MLL-ALL leukemia Lock PPTC-MLL-8 PPTC-MLL-8-D PPTC-MLL-8-R Yes Yes Yes No Yes Yes No ALL Female Diagnosis Diagnosis First <12 months 0.92 Unknown European Unknown Bone marrow t(11;19), MLL-MLLT1 Unknown Unknown No Prior Tx NA t(11;19), MLL-MLLT1 Unknown Unknown Unknown Unknown Unknown Yes Infant MLL-ALL G23 CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 70 Yes (SNP) - ref is PDX 1o 53 70 4
yes yes yes yes yes PPTC-ALL-86-D.SNPFinalReports.txt PPTC-ALL-86-D yes PPTCALL86-D-human.bam NA PPTCALL86-D-human.bam 841f63e453f808257d90a39993a898c8 PPTC-ALL-86-D-mouse.bam PPTC-ALL-86-R-human.bam 91849b0f68a917ea5636df19e7e96259 PPTC-ALL-86-R-mouse.bam yes PPTC-ALL-86-R.human.genes.fpkm_tracking PPTCALL86-D-PDX.bam 7b6e2c1a6ed9c1f2e01ced1dccd16f2d PPTCALL86-R-PDX.bam a2e02e03c209482266b4d78aa3d2e12e PPTC-ALL-86-D-human PPTC-ALL-86-D PPTC-ALL-86-R PDX P0164 MLL-86 MLL-ALL PPTCALL86 10-PPTCALL86 NA ALL MLL-ALL MLL-ALL MLL-ALL NA ALAL ALL ALL leukemia leukemia MLL-ALL leukemia Lock PPTC-ALL-86 PPTC-ALL-86-D PPTC-ALL-86-R Yes No No No Yes Yes Yes NA Female Relapse Relapse Second 4 months 0.33 Unknown SouthAsianOrHispanic Unknown Bone marrow t(4;11), MLL-AFF1 Unknown Unknown Prior Chemotherapy Not Applicable t(4;11), MLL-AFF1 5/18/14 2014 1000 540 540 Yes NA CCI NSG (ABR) NSG intravenous, either lateral tail vein 239 Yes (SNP) 102 52 3
yes yes yes yes yes PPTC-NB-1382-D-1.SNPFinalReports.txt PPTC-NB-1382-D yes TARGET-30-PPT065-61A-01D.hybrid_hg19.realigned.recal.bam NA TARGET-30-PPT065-61A-01D.hybrid_hg19.realigned.recal.bam TARGET-30-PPT065-61A-01D.hybrid_mm10.realigned.recal.bam PPTC-NB-1382-R-human.bam c0112ca638e197837ccb757fe23b1294 PPTC-NB-1382-R-mouse.bam yes PPTC-NB-1382-R.human.genes.fpkm_tracking TARGET-30-PPT065-61A-01D.PDX.bam PPTCNB1382-R-PDX.bam c0e6825f8e896b58767d955eab8bff4b TARGET-30-PPT065-61A-01D-human TARGET-30-PPT065-61A-01D TARGET-30-PPT065-61A-01R XG P0165 NB-1382 Neuroblastoma PPTCNB1382 30-PPTCNBL1382 TARGET-30-PPT065 Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-NB-1382 PPTC-NB-1382-D PPTC-NB-1382-R No Yes Yes No Yes Yes No Neuroblastoma Female Progressing Disease Relapse Third 3.5 Unknown NA Unknown European Unknown Retroperitoneal mass MYCN Amp Stage 3 Unknown VCR, VP-16, CTX, CDDP, Carbo WT amp I1170N NA Unknown Unknown Unknown Unknown Unknown Yes E7 CHOP NSG CB17-SCID subcutaneous; left flank Negative CRL Negative 8 < 3 cm^3 Unknown Unknown 16 yes
yes yes yes yes yes PPTC-NB-1643-D-1.SNPFinalReports.txt PPTC-NB-1643-D yes TARGET-30-PPT064-61A-01D.hybrid_hg19.realigned.recal.bam NA TARGET-30-PPT064-61A-01D.hybrid_hg19.realigned.recal.bam TARGET-30-PPT064-61A-01D.hybrid_mm10.realigned.recal.bam PPTC-NB-1643-R-human.bam 3aab790f0515b7566f83d68b6ad24774 PPTC-NB-1643-R-mouse.bam yes PPTC-NB-1643-R.human.genes.fpkm_tracking TARGET-30-PPT064-61A-01D.PDX.bam PPTCNB1643-R-PDX.bam 5e674a892608f69b28486fc55f814ceb TARGET-30-PPT064-61A-01D-human TARGET-30-PPT064-61A-01D TARGET-30-PPT064-61A-01R XG P0166 NB-1643 Neuroblastoma PPTCNB1643 30-PPTCNBL1643 TARGET-30-PPT064 Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-NB-1643 PPTC-NB-1643-D PPTC-NB-1643-R No Yes Yes No Yes Yes No Neuroblastoma, In Vitro Male Diagnosis Diagnosis First 2 years 2 Unknown European Retroperitoneal mass Retroperitoneal mass MYCN Amp; Wild-type TP53 Polymorphism @ 466[G/C] Stage 4 High Unknown No Prior Tx WT amp R1275Q NA Unknown Unknown Unknown Unknown Unknown Yes E6, H12 CHOP, TTHSC NSG CB17-SCID subcutaneous; left flank Negative CRL Negative 8 or 21 < 3 cm^3 17 Unknown 21 yes
yes yes yes yes yes PPTC-NB-1691-D-1.SNPFinalReports.txt PPTC-NB-1691-D yes TARGET-30-PPT061-61A-01D.hybrid_hg19.realigned.recal.bam NA TARGET-30-PPT061-61A-01D.hybrid_hg19.realigned.recal.bam TARGET-30-PPT061-61A-01D.hybrid_mm10.realigned.recal.bam PPTC-NB-1691-R-human.bam cb251dd85123454d261380db374062f2 PPTC-NB-1691-R-mouse.bam yes PPTC-NB-1691-R.human.genes.fpkm_tracking TARGET-30-PPT061-61A-01D.PDX.bam PPTCNB1691-R-PDX.bam ed4e4c4f260142476735b3dbf9f02c10 TARGET-30-PPT061-61A-01D-human TARGET-30-PPT061-61A-01D TARGET-30-PPT061-61A-01R XG P0167 NB-1691 Neuroblastoma PPTCNB1691 30-PPTCNBL1691 TARGET-30-PPT061 Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-NB-1691 PPTC-NB-1691-D PPTC-NB-1691-R No Yes Yes No Yes Yes No Neuroblastoma, In Vitro Male Progressing Disease Relapse Third 1.9 Unknown NA Unknown European Unknown Retroperitoneal mass MYCN Amp Stage 4 High Unknown AraC, Dauno, 6-TG-VP-16, 5-AzaC WT amp WT NA Unknown Unknown Unknown Unknown Unknown Yes E3, H32 CHOP, TTHSC NSG CB17-SCID subcutaneous; left flank Negative CRL Negative 3 < 3 cm^3 14 35 17 yes
yes yes yes yes yes PPTC-NB-1771-D-1.SNPFinalReports.txt PPTC-NB-1771-D yes TARGET-30-PPT060-61A-01D.hybrid_hg19.realigned.recal.bam NA TARGET-30-PPT060-61A-01D.hybrid_hg19.realigned.recal.bam TARGET-30-PPT060-61A-01D.hybrid_mm10.realigned.recal.bam PPTC-NB-1771-R-human.bam d8b15c8b6ef8be84ab82d44f6804cb16 PPTC-NB-1771-R-mouse.bam yes PPTC-NB-1771-R.human.genes.fpkm_tracking TARGET-30-PPT060-61A-01D.PDX.bam PPTCNB1771-R-PDX.bam ad60f01231fc644d98d6d7871780b5a2 TARGET-30-PPT060-61A-01D-human TARGET-30-PPT060-61A-01D TARGET-30-PPT060-61A-01R XG P0168 NB-1771 Neuroblastoma PPTCNB1771 30-PPTCNBL1771 TARGET-30-PPT060 Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-NB-1771 PPTC-NB-1771-D PPTC-NB-1771-R No Yes Yes No Yes Yes No Neuroblastoma Male Diagnosis Diagnosis First 2.1 Unknown NA Unknown European Unknown Adrenal mass MYCN Amp Stage 4 High Unknown No Prior Tx C135F amp WT NA Unknown Unknown Unknown Unknown Unknown Yes E2 CHOP, TTHSC NSG CB17-SCID subcutaneous; left flank Negative CRL Negative 16 or 22 < 3 cm^3 24 Unknown 22 yes
yes yes yes yes yes PPTC-NB-EBc1-D-1.SNPFinalReports.txt PPTC-NB-EBc1-D yes TARGET-30-PPT062-61A-01D.hybrid_hg19.realigned.recal.bam NA TARGET-30-PPT062-61A-01D.hybrid_hg19.realigned.recal.bam TARGET-30-PPT062-61A-01D.hybrid_mm10.realigned.recal.bam PPTC-NB-EBc1-R-human.bam c9094e725cdaac3fd4f6110bcdce3c92 PPTC-NB-EBc1-R-mouse.bam yes PPTC-NB-EBc1-R.human.genes.fpkm_tracking TARGET-30-PPT062-61A-01D.PDX.bam PPTCNBEBc1-R-PDX.bam 8a880ab73804289b04e76ba6dfb524c3 TARGET-30-PPT062-61A-01D-human TARGET-30-PPT062-61A-01D TARGET-30-PPT062-61A-01R XG P0169 NB-EBc1 Neuroblastoma PPTCNBEBc1 30-PPTCNBLEBc1 TARGET-30-PPT062 Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-NB-EBc1 PPTC-NB-EBc1-D PPTC-NB-EBc1-R No Yes Yes No Yes Yes No Neuroblastoma, In Vitro Male Progressing Disease Relapse Third 31 months 2.6 Unknown European Adrenal mass Adrenal mass Non-MYCN Amp Stage 4 High Unknown CTX, DOX, CDDP, VM-26 WT non-amp WT NA Unknown Unknown Unknown Unknown Unknown Yes E4, H13 CHOP, TTHSC NSG CB17-SCID subcutaneous Negative CRL Negative 9 < 3 cm^3 14 Unknown 25 yes
yes yes yes yes yes PPTC-Fly-623m-D.SNPFinalReports.txt PPTC-Fly-623m-D yes PPTC-Fly-623m-D-human.bam TRUE PPTC-Fly-623m-D-human.bam 0d4af5957f6e2328f6b40878d35c5294 PPTC-Fly-623m-D-mouse.bam PPTC-Fly-623m-R-human.bam 6fa066f9434dc401e64b6570b17675e7 PPTC-Fly-623m-R-mouse.bam yes PPTC-Fly-623m-R.human.genes.fpkm_tracking PPTCFly623m-D-PDX.bam 90255ca6c3b00679fddb2ddafc263ac8 PPTCFly623m-R-PDX.bam 5d8d840056c3ef9437ab6a745dc1f054 PPTC-Fly-623m-D-human PPTC-Fly-623m-D PPTC-Fly-623m-R XG P0170 NB-Fly-623m Neuroblastoma PPTCFly623m 30-PPTCCOGNBLFly623m NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-Fly-623m PPTC-Fly-623m-D PPTC-Fly-623m-R No No No No Yes Yes Yes NA Male Relapse Relapse Second 14 years 14 Unknown European Unknown post mortem blood Non-MYCN Amp Stage 4 POG 9640, ADVL0912 cisplatin, etoposide, vincristine, doxorubicin, crizotinib, MIBG, topotecan, cyclophosphamide WT non-amp R1275Q NA 9/12/14 2014 Unknown Unknown Unknown Yes Formerly known as COG-N-547nb NA CHOP CB17-SCID CB17-SCID subcutaneous yes Negative CRL Negative 2 or 3 10 yes
yes yes yes yes yes PPTC-NB-SD-D-1.SNPFinalReports.txt PPTC-NB-SD-D yes TARGET-30-PPT059-61A-01D.hybrid_hg19.realigned.recal.bam NA TARGET-30-PPT059-61A-01D.hybrid_hg19.realigned.recal.bam TARGET-30-PPT059-61A-01D.hybrid_mm10.realigned.recal.bam PPTC-NB-SD-R-human.bam 9c00f8da32e0e6049984127de3dadafd PPTC-NB-SD-R-mouse.bam yes PPTC-NB-SD-R.human.genes.fpkm_tracking TARGET-30-PPT059-61A-01D.PDX.bam PPTCNBSD-R-PDX.bam f8e843ecc541c492cf139bc889713cb8 TARGET-30-PPT059-61A-01D-human TARGET-30-PPT059-61A-01D TARGET-30-PPT059-61A-01R XG P0171 NB-SD Neuroblastoma PPTCNBSD 30-PPTCNBLSD TARGET-30-PPT059 Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Reynolds, Maris PPTC-NB-SD PPTC-NB-SD-D PPTC-NB-SD-R No Yes Yes No Yes Yes No Neuroblastoma, In Vitro Male Progressing Disease Relapse Third 1 Unknown NA Unknown African Unknown bone marrow MYCN Amp Stage 4 High Unknown CTX, DOX, CDDP, VM-26 C176F amp F1174L NA Unknown Unknown Unknown Unknown Unknown Yes E1, H31 CHOP, TTHSC NSG CB17-SCID subcutaneous; left flank Negative CRL Negative 6 < 3 cm^3 42 Unknown 16 yes
yes yes yes yes yes PPTC-NCH-S13-7484-D.SNPFinalReports.txt PPTC-NCH-S13-7484-D yes PPTC-NCH-S13-7484-D-human.bam NA PPTC-NCH-S13-7484-D-human.bam d67e678303d8a8d1900ed4b3fe437834 PPTC-NCH-S13-7484-D-mouse.bam PPTC-NCH-S13-7484-R-human.bam 9b8d0fc87cc40d3067c401136d52bf0d PPTC-NCH-S13-7484-R-mouse.bam yes PPTC-NCH-S13-7484-R.human.genes.fpkm_tracking PPTC-NCH-S13-7484-D.PDX.bam PPTC-NCH-S13-7484-R.PDX.bam PPTC-NCH-S13-7484-D-human PPTC-NCH-S13-7484-D PPTC-NCH-S13-7484-R PDX P0172 NCH-ARMS-2-NCH-S13-7484 Alveolar Rhabdomyosarcoma PPTCNCHS137484 80-PPTCNCHS137484 NA Rhabdomyosarcoma Fusion+ RMS Fusion+ RMS Fusion+ RMS NA ARMS Soft sarcoma Rhabdomyosarcoma Soft sarcoma sarcoma arms solid Houghton PPTC-NCH-S13-7484 PPTC-NCH-S13-7484-D PPTC-NCH-S13-7484-R No No No No Yes Yes Yes NA Female Unknown Unknown Third 16 years 16 Unknown European Liver R. Breast metastasis Myogenin, MyoD1, and desmin positive, Fusion Status Not Determined Alveolar, PAX3-FOXO1+, Mygogen+, MyoD1+, Desmin+ Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank No NA
yes yes yes yes yes PPTC-NCH-CA-1-D.SNPFinalReports.txt PPTC-NCH-CA-1-D yes PPTC-NCH-CA-1-D-human.bam NA PPTC-NCH-CA-1-D-human.bam 48ebc163bcefef1476ef02f4435382bb PPTC-NCH-CA-1-D-mouse.bam PPTC-NCH-CA-1-R-human.bam 7c0bfeb1cd1f2b1b200844418efffd87 PPTC-NCH-CA-1-R-mouse.bam yes PPTC-NCH-CA-1-R.human.genes.fpkm_tracking PPTCNCHCA1-D-PDX.bam 11a621198572155802cd2f17af2b6db8 PPTCNCHCA1-R-PDX.bam 7a8cdb22a99ef72c92a5d94a0c9028df PPTC-NCH-CA-1-D-human PPTC-NCH-CA-1-D PPTC-NCH-CA-1-R PDOX P0173 NCH-CA-1 Small cell carcinoma (large cell variant) PPTCNCHCA1 99-PPTCNCHCA1 NA Small Cell Carcinoma Small Cell Carcinoma Small Cell Carcinoma Small Cell Carcinoma NA SCUP Carcinoma Small Cell Carcinoma Soft sarcoma rare rare solid Houghton PPTC-NCH-CA-1 PPTC-NCH-CA-1-D PPTC-NCH-CA-1-R No No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 7 years 7 Unknown European Abdominal mass Abdominal mass Not noted Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes same patient as NCH-CA-2 NA NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-NCH-CA-2-D.SNPFinalReports.txt PPTC-NCH-CA-2-D yes PPTC-NCH-CA-2-D-human.bam NA PPTC-NCH-CA-2-D-human.bam 05d1fae5f25cdde0b7e13b24f16da4f7 PPTC-NCH-CA-2-D-mouse.bam PPTC-NCH-CA-2-R-human.bam f2192ed4de043c87e9c86bda7153e08a PPTC-NCH-CA-2-R-mouse.bam yes PPTC-NCH-CA-2-R.human.genes.fpkm_tracking PPTCNCHCA2-D-PDX.bam a75dc22478e70a48e1f7c659850b1096 PPTCNCHCA2-R-PDX.bam 45493b2ac6d68801cb49ae66c3b4f750 PPTC-NCH-CA-2-D-human PPTC-NCH-CA-2-D PPTC-NCH-CA-2-R PDOX P0173 NCH-CA-2 Small cell carcinoma (large cell variant) PPTCNCHCA2 99-PPTCNCHCA2 NA Small Cell Carcinoma Small Cell Carcinoma Small Cell Carcinoma Small Cell Carcinoma NA SCUP Carcinoma Small Cell Carcinoma Soft sarcoma rare rare solid Houghton PPTC-NCH-CA-2 PPTC-NCH-CA-2-D PPTC-NCH-CA-2-R No No No No Yes Yes Yes NA Female Relapse Relapse Second 7 years 7 Unknown European Paracaval lymph Node Paracaval Lymph Node metastasis Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes same patient as NCH-CA-1 NA NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-NCH-CA-3-D.SNPFinalReports.txt PPTC-NCH-CA-3-D yes PPTC-NCH-CA-3-D-human.bam NA PPTC-NCH-CA-3-D-human.bam e4bf63935e77e97a295d2ebb8d22744b PPTC-NCH-CA-3-D-mouse.bam PPTC-NCH-CA-3-R-human.bam cf915581264a6a32eb6c3af38b0a1c6c PPTC-NCH-CA-3-R-mouse.bam yes PPTC-NCH-CA-3-R.human.genes.fpkm_tracking PPTCNCHCA3-D-PDX.bam 312306ef19d752b3b8a3f512d2555eff PPTCNCHCA3-R-PDX.bam 7069de894bd21f98dd2afb66550509e8 PPTC-NCH-CA-3-D-human PPTC-NCH-CA-3-D PPTC-NCH-CA-3-R PDOX P0174 NCH-CA-3 Colon carcinoma PPTCNCHCA3 99-PPTCNCHCA3 NA Colon Carcinoma Colon Carcinoma Colon Carcinoma Colon Carcinoma NA COADREAD Carcinoma Carcinoma Soft sarcoma rare rare solid Houghton PPTC-NCH-CA-3 PPTC-NCH-CA-3-D PPTC-NCH-CA-3-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 4 years 4 Unknown African Colon Transverse Colon Not noted Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes NA NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-NCH-CCS-1-D.SNPFinalReports.txt PPTC-NCH-CCS-1-D yes PPTCNCHCCS1-D-human.bam FALSE PPTC-NCH-CCS-1-D-human.bam a761e582c732dba445960f1fd2a868e2 PPTC-NCH-CCS-1-D-mouse.bam PPTC-NCH-CCS-1-R-human.bam 7a8cf2777f0d5e08833c18b9f5c1a35f PPTC-NCH-CCS-1-R-mouse.bam yes PPTC-NCH-CCS-1-R.human.genes.fpkm_tracking PPTCNCHCCS1-D-PDX.bam 0c7d4bc5cd5f41f9e95ae2b5de7630ee PPTCNCHCCS1-R-PDX.bam PPTC-NCH-CCS-1-D-human PPTC-NCH-CCS-1-D PPTC-NCH-CCS-1-R PDX P0175 NCH-CCS-1 Clear Cell Sarcoma PPTCNCHCCS1 51-PPTCNCHCCS1 NA Clear Cell Sarcoma Clear Cell Sarcoma Clear Cell Sarcoma Clear Cell Sarcoma NA CCS Soft sarcoma Other Sarcoma Soft sarcoma rare rare solid Houghton PPTC-NCH-CCS-1 PPTC-NCH-CCS-1-D PPTC-NCH-CCS-1-R No No No No Yes Yes Yes NA Female Relapse Relapse Second 14 years 14 European European Mediastinum Lymph Node met Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Relapse metastasis NA NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-NCH-RMS-1-D.SNPFinalReports.txt PPTC-NCH-RMS-1-D yes PPTC-NCH-RMS-1-D-human.bam NA PPTC-NCH-RMS-1-D-human.bam a62c4f58b0dfda23e3d426e9eaadf3d2 PPTC-NCH-RMS-1-D-mouse.bam PPTC-NCH-RMS-1-R-human.bam c9407a82c6e49722f2b98bfd70c0d2fc PPTC-NCH-RMS-1-R-mouse.bam yes PPTC-NCH-RMS-1-R.human.genes.fpkm_tracking PPTCNCHRMS1-D-PDX.bam fa9d5d7a0bb37e188520d41e214da8e9 PPTCNCHRMS1-R-PDX.bam 4fe93c6931059ef0ca2f4261b761ab0c PPTC-NCH-RMS-1-D-human PPTC-NCH-RMS-1-D PPTC-NCH-RMS-1-R PDX P0176 NCH-ERMS-1-NCH-RMS-1 Embryonal Rhabdomyosarcoma PPTCNCHRMS1 80-PPTCNCHRMS1 NA Rhabdomyosarcoma Fusion- RMS Fusion- RMS Fusion- RMS NA ERMS Soft sarcoma Rhabdomyosarcoma Soft sarcoma sarcoma erms solid Houghton PPTC-NCH-RMS-1 PPTC-NCH-RMS-1-D PPTC-NCH-RMS-1-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 5 years 5 Unknown European Orbit Orbit MyoD1, positive Embryonal, MyoD1+ Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Spindle/myxoid NA NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes no yes yes yes PPTC-NCH-EWS-1-D.SNPFinalReports.txt PPTC-NCH-EWS-1-D yes PPTCNCHEWS1-D-human.bam FALSE PPTC-NCH-EWS-1-D-human.bam 61fa7722a60ae2b1053eb64ce84fa482 PPTC-NCH-EWS-1-D-mouse.bam NA NA NA no NA PPTCNCHEWS1-D-PDX.bam 79fe17200add0363511d46e4edba8e29 NA NA PPTC-NCH-EWS-1-D-human PPTC-NCH-EWS-1-D NA XG P0177 NCH-EWS-1 Ewing Sarcoma PPTCNCHEWS1 41-PPTCNCHEWS1 NA Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma NA ES Bone sarcoma Ewing Sarcoma bone sarcoma sarcoma ewing solid Houghton PPTC-NCH-EWS-1 PPTC-NCH-EWS-1-D NA No No No No No No Yes NA Male Relapse Relapse Second 15 years 15 European European Lung Lung met Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-NCH-HEP-1-D-1.SNPFinalReport.txt PPTC-NCH-HEP-1-D yes PPTC-NCH-HEP-1-D-human.bam NA PPTC-NCH-HEP-1-D-human.bam 55f0abada791fbcf1756828b84ff1321 PPTC-NCH-HEP-1-D-mouse.bam PPTC-NCH-HEP-1-R-human.bam 8252def426613fc38c9cef10fb9d77ae PPTC-NCH-HEP-1-R-mouse.bam yes PPTC-NCH-HEP-1-R.human.genes.fpkm_tracking PPTCNCHHEP1-D-PDX.bam 3e38ba509bf72a6349e3d1d2f8603cc8 PPTCNCHHEP1-R-PDX.bam fe0e5eddb15e6be00c8ce31ee4625368 PPTC-NCH-HEP-1-D-human PPTC-NCH-HEP-1-D PPTC-NCH-HEP-1-R PDX P0178 NCH-HEP1 Hepatoblastoma PPTCNCHHEP1 65-PPTCNCHHEP1 NA Hepatoblastoma Hepatoblastoma Hepatoblastoma Hepatoblastoma NA LIHB Renal tumor Hepatoblastoma Renal rare rare solid Houghton PPTC-NCH-HEP-1 PPTC-NCH-HEP-1-D PPTC-NCH-HEP-1-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 11 months 0.92 Unknown European Liver Liver Epithelial subtype with fetal/embryonic pattern Epithelial subtype with fetal/embryonic pattern Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes NA NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-NCH-MB-1-D-1.SNPFinalReport.txt PPTC-NCH-MB-1-D yes PPTC-NCH-MB-1-D-human.bam NA PPTC-NCH-MB-1-D-human.bam 48b17bfebf86693fcf975272b31bbe4d PPTC-NCH-MB-1-D-mouse.bam PPTC-NCH-MB-1-R-human.bam fccf71bb2aef0a62138bdd03154ce15f PPTC-NCH-MB-1-R-mouse.bam yes PPTC-NCH-MB-1-R.human.genes.fpkm_tracking PPTCNCHMB1-D-PDX.bam c57bc39aa3e75a97c618525fe53a5710 PPTCNCHMB1-R-PDX.bam 7deb49eb5fdeb72456d6df88fe9c8b3e PPTC-NCH-MB-1-D-human PPTC-NCH-MB-1-D PPTC-NCH-MB-1-R PDX P0179 NCH-MB-1 Medulloblastoma (large cell anaplastic) PPTCNCHMB1 64-PPTCNCHMB1 NA Medulloblastoma Medulloblastoma Medulloblastoma MB-WNT WNT MBL CNS embryonal tumor Medulloblastoma embryonal brain Medulloblastoma brain Houghton PPTC-NCH-MB-1 PPTC-NCH-MB-1-D PPTC-NCH-MB-1-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 10 years 10 Unknown European 4th ventricle 4th ventricle Large cell anaplastic by pathology, CTNNB1 and DDX3X mutated: WNT by genetics/classifier Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-NCH-MN-1-D.SNPFinalReports.txt PPTC-NCH-MN-1-D yes PPTCNCHMN1-D-human.bam FALSE PPTC-NCH-MN-1-D-human.bam 9cb280739e72b384243764f33a200973 PPTC-NCH-MN-1-D-mouse.bam PPTC-NCH-MN-1-R-human.bam 4470a124a79ffa73d86f260c87967671 PPTC-NCH-MN-1-R-mouse.bam yes PPTC-NCH-MN-1-R.human.genes.fpkm_tracking PPTCNCHMN1-D-PDX.bam f0b0b8bef1cfa4f978463f9fce6b833f PPTCNCHMN1-R-PDX.bam 3144e5bb679feb573344beef92ccfc18 PPTC-NCH-MN-1-D-human PPTC-NCH-MN-1-D PPTC-NCH-MN-1-R PDX P0180 NCH-MN-1 Rhabdoid Meningioma PPTCNCHMN1 50-PPTCNCHMN1 NA High-grade glioma Astrocytoma Astrocytoma Astrocytoma IDH/H3 WT ASTR CNS astrocytic tumor Astrocytoma astrocytic brain astrocytic brain Houghton PPTC-NCH-MN-1 PPTC-NCH-MN-1-D PPTC-NCH-MN-1-R No No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 16 years 16 Unknown Mixed_or_Unknown L. Occipital mass L. Occipital mass Anaplastic; Anaplastic glioma Grade III by genetics Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes Differential diagnosis included AT/RT, sarcoma, possibly rhabdomyosarcoma, anaplastic meningioma. High grade lesion with mitoses and necrosis. Final decision rhabdoid meningioma (WHO grade III (ICD-O code 9538/3). Sample was occipital tumor. NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-NCH-NB-1-D.SNPFinalReports.txt PPTC-NCH-NB-1-D yes PPTC-NCH-NB-1-D-human.bam NA PPTC-NCH-NB-1-D-human.bam 931f871bbdceb6a94b7dc5f452acd019 PPTC-NCH-NB-1-D-mouse.bam PPTC-NCH-NB-1-R-human.bam 54b46a9b5e8ac674923d3264be5266ac PPTC-NCH-NB-1-R-mouse.bam yes PPTC-NCH-NB-1-R.human.genes.fpkm_tracking PPTCNCHNB1-D-PDX.bam 74c890c0bd0216736ed5f6aff7ffa28c PPTCNCHNB1-R-PDX.bam 1cc0d13afbea58f7f3b20a407e7486aa PPTC-NCH-NB-1-D-human PPTC-NCH-NB-1-D PPTC-NCH-NB-1-R PDX P0181 NCH-NB-1 Poorly differentiated neuroblastoma PPTCNCHNB1 30-PPTCNCHNB1 NA Neuroblastoma Neuroblastoma Neuroblastoma Neuroblastoma NA NBL Neuroblastoma Neuroblastoma Neuroblastoma neuroblastoma Neuroblastoma solid Houghton PPTC-NCH-NB-1 PPTC-NCH-NB-1-D PPTC-NCH-NB-1-R No No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 11 months 0.92 Unknown European Mediastinum Posterior mediastil mass (mediastinum) Non-MYCN Amp Stage 3 Unknown No Prior Tx WT non-amp F1174L NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic CB17-SCID solid subcutaneous; left flank Negative CRL Negative NA
yes yes yes yes yes PPTC-NCH-OS-1-D.SNPFinalReports.txt PPTC-NCH-OS-1-D yes PPTC-NCH-OS-1-D-human.bam NA PPTC-NCH-OS-1-D-human.bam 46965a028ad5172a53979ab8b66620a1 PPTC-NCH-OS-1-D-mouse.bam PPTC-NCH-OS-1-R-human.bam 820b91a370a8e143bb65e30c8b889bb4 PPTC-NCH-OS-1-R-mouse.bam yes PPTC-NCH-OS-1-R.human.genes.fpkm_tracking PPTCNCHOS1-D-PDX.bam 494a0c3aa8b49c127a27021542d08305 PPTCNCHOS1-R-PDX.bam 5b7f0dbf363c7f984427aa4c4d621aad PPTC-NCH-OS-1-D-human PPTC-NCH-OS-1-D PPTC-NCH-OS-1-R PDX P0182 NCH-OS-1 Osteosarcoma PPTCNCHOS1 40-PPTCNCHOS1 NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-NCH-OS-1 PPTC-NCH-OS-1-D PPTC-NCH-OS-1-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 24 years 24 Unknown European R. Proximal Ulna R. Proximal Ulna Not noted Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes NA NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-NCH-PXA-1-D-1.SNPFinalReport.txt PPTC-NCH-PXA-1-D yes PPTC-NCH-PXA-1-D-human.bam NA PPTC-NCH-PXA-1-D-human.bam 1ac9424058cd2320f419b74356a94f6e PPTC-NCH-PXA-1-D-mouse.bam PPTC-NCH-PXA-1-R-human.bam 32105dc103f5b8ac69b0d423ddd10eb4 PPTC-NCH-PXA-1-R-mouse.bam yes PPTC-NCH-PXA-1-R.human.genes.fpkm_tracking PPTCNCHPXA1-D-PDX.bam 1f866f19e00b8267333eb58cac080d10 PPTCNCHPXA1-R-PDX.bam c194ba957f3273d4649121e45c2a7c4c PPTC-NCH-PXA-1-D-human PPTC-NCH-PXA-1-D PPTC-NCH-PXA-1-R PDOX P0183 NCH-PXA-1 Pleomorphic Xanthoastrocytoma PPTCNCHPXA1 65-PPTCNCHPXA1 NA Pleomorphic Xanthoastrocytoma Astrocytoma Astrocytoma Astrocytoma PXA ASTR CNS astrocytic tumor Other Brain astrocytic brain astrocytic brain Houghton PPTC-NCH-PXA-1 PPTC-NCH-PXA-1-D PPTC-NCH-PXA-1-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 6 years 6 Unknown African R. Sylvian Fissure R. Sylvian Fissure GFAP-negative/weak; MIB-1 nuclear staining >50%, Most consistent with IDC-0 Code 9424/3 GFAP-/weak; MIB-1 >50%, consistent with IDC-0 Code 9424/3 Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes no yes yes yes PPTC-NCH-RBD-1-D-1.SNPFinal PPTC-NCH-RBD-1-D yes PPTCNCHRBD1-D-human.bam FALSE PPTC-NCH-RBD-1-D-human.bam d774645defecfa6e2632d8e84da8b9fc PPTC-NCH-RBD-1-D-mouse.bam NA NA NA no NA PPTCNCHRBD1-D-PDX.bam a2cb48af3c613c37ee4df5bd18413581 NA NA PPTC-NCH-RBD-1-D-human PPTC-NCH-RBD-1-D NA PDOX P0184 NCH-RBD-1 Rhabdoid tumor PPTCNCHRBD1 62-PPTCNCHRBD1 NA Extracranial Rhabdoid Extracranial Rhabdoid Extracranial Rhabdoid Extracranial Rhabdoid NA ATRT CNS embryonal tumor Extracranial Rhabdoid embryonal brain rhabdoid brain Houghton PPTC-NCH-RBD-1 PPTC-NCH-RBD-1-D NA No No No No Yes Yes Yes NA Unknown Unknown Unknown Third Unknown Unknown NA Unknown European Unknown Lung metastasis Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes RNA sample does not match DNA NA NCH NA
yes yes yes yes yes PPTC-NCH-RBD-2-D-1.SNPFinal PPTC-NCH-RBD-2-D yes PPTCNCHRBD2-D-human.bam FALSE PPTC-NCH-RBD-2-D-human.bam e803f51615e426f0bd02769ec0d15328 PPTC-NCH-RBD-2-D-mouse.bam PPTC-NCH-RBD-2-R-human.bam f4633f20df7d22157096cab3d6469f26 PPTC-NCH-RBD-2-R-mouse.bam yes PPTC-NCH-RBD-2-R.human.genes.fpkm_tracking PPTCNCHRBD2-D-PDX.bam da990d9ca12977f1b4ea685ed574bab4 PPTCNCHRBD2-R-PDX.bam fd52d10b092e5ddd443f2915eb4750fc PPTC-NCH-RBD-2-D-human PPTC-NCH-RBD-2-D PPTC-NCH-RBD-2-R PDOX P0185 NCH-RBD-2 Rhabdoid PPTCNCHRBD2 62-PPTCNCHRBD2 NA Extracranial Rhabdoid Extracranial Rhabdoid Extracranial Rhabdoid Extracranial Rhabdoid NA ATRT CNS embryonal tumor Extracranial Rhabdoid embryonal brain rhabdoid brain Houghton PPTC-NCH-RBD-2 PPTC-NCH-RBD-2-D PPTC-NCH-RBD-2-R No No No No Yes Yes Yes NA Female Unknown Unknown Third 9 months 0.75 Unknown European Liver Liver metastasis INI-1 Negative Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes NA NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous;left flank NA
yes yes yes yes yes PPTC-NCH-RBD-4-D-1.SNPFinal PPTC-NCH-RBD-4-D yes PPTCNCHRBD4-D-human.bam FALSE PPTC-NCH-RBD-4-D-human.bam 003d69b8efcdb5af1c6151573c4ab8bf PPTC-NCH-RBD-4-D-mouse.bam PPTC-NCH-RBD-4-R-human.bam 420d0aa680f1aaaa76c2d5d936548282 PPTC-NCH-RBD-4-R-mouse.bam yes PPTC-NCH-RBD-4-R.human.genes.fpkm_tracking PPTCNCHRBD4-D-PDX.bam 32448ef44fb1325ff7abba8c6a1b0d17 PPTCNCHRBD4-R-PDX.bam 3d172328a6ff617c005b704efbee0062 PPTC-NCH-RBD-4-D-human PPTC-NCH-RBD-4-D PPTC-NCH-RBD-4-R PDX P0186 NCH-RBD-4 ATRT PPTCNCHRBD4 62-PPTCNCHRBD4 NA ATRT ATRT ATRT ATRT NA ATRT CNS embryonal tumor ATRT embryonal brain rhabdoid brain Houghton PPTC-NCH-RBD-4 PPTC-NCH-RBD-4-D PPTC-NCH-RBD-4-R No No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 13 years 13 Unknown EastAsian R. Parietal Lobe R. Parietal Lobe INI-1 Negative INI-1 Negative Grade 4 Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous;left flank NA
yes yes yes yes yes PPTC-NCH-WT-4-D.SNPFinalReports.txt PPTC-NCH-WT-4-D yes PPTC-NCH-WT-4-D-human.bam NA PPTC-NCH-WT-4-D-human.bam 18f679fc8488af07226acfa59630e07b PPTC-NCH-WT-4-D-mouse.bam PPTC-NCH-WT-4-R-human.bam 891138a17daf5a786171a6beb4e47d4d PPTC-NCH-WT-4-R-mouse.bam yes PPTC-NCH-WT-4-R.human.genes.fpkm_tracking PPTCNCHWT4-D-PDX.bam d58fa3dece24c248faf3f5752be18f54 PPTCNCHWT4-R-PDX.bam 999ec6d6c4cfc0642513dd7a27fd42f4 PPTC-NCH-WT-4-D-human PPTC-NCH-WT-4-D PPTC-NCH-WT-4-R PDX P0187 NCH-WT-4 Wilms Tumor PPTCNCHWT4 50-PPTCNCHWT4 NA Wilms Wilms Wilms Wilms NA WT Renal tumor Wilms Renal renal renal solid Houghton PPTC-NCH-WT-4 PPTC-NCH-WT-4-D PPTC-NCH-WT-4-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 4 years 4 Unknown European L. Kidney L. Kidney Blastemal, FH No Anaplasia, Blastemal, FH Stage 1 Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-NCH-WT-5-D.SNPFinalReports.txt PPTC-NCH-WT-5-D yes PPTCNCHWT5-D-human.bam FALSE PPTC-NCH-WT-5-D-human.bam 05eb8a55d1e857e74891c5e19de8cd5d PPTC-NCH-WT-5-D-mouse.bam PPTC-NCH-WT-5-R-human.bam 528bf408fbc9c9d3c154ec9f2a82c5a7 PPTC-NCH-WT-5-R-mouse.bam yes PPTC-NCH-WT-5-R.human.genes.fpkm_tracking PPTCNCHWT5-D-PDX.bam d34847512dc64c4cea9184748a88befb PPTCNCHWT5-R-PDX.bam 651efe072dc93713a64ffdba7c297e11 PPTC-NCH-WT-5-D-human PPTC-NCH-WT-5-D PPTC-NCH-WT-5-R PDX P0188 NCH-WT-5 Wilms Tumor PPTCNCHWT5 50-PPTCNCHWT5 NA Wilms Wilms Wilms Wilms NA WT Renal tumor Wilms Renal renal renal solid Houghton PPTC-NCH-WT-5 PPTC-NCH-WT-5-D PPTC-NCH-WT-5-R No No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 1 years 1 Unknown European L. Kidney L. Kidney FH FH, nuclear unrest Stage 1 Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-NCH-WT-6-D.SNPFinalReports.txt PPTC-NCH-WT-6-D yes PPTCNCHWT6-D-human.bam FALSE PPTC-NCH-WT-6-D-human.bam 84991c06196710bcef8b9cc929f7a814 PPTC-NCH-WT-6-D-mouse.bam PPTC-NCH-WT-6-R-human.bam 4fdff6d40bf44e9b6abb14ca5344fc9a PPTC-NCH-WT-6-R-mouse.bam yes PPTC-NCH-WT-6-R.human.genes.fpkm_tracking PPTCNCHWT6-D-PDX.bam 091b619f07dd14b4e563f4c1fabcf17a PPTCNCHWT6-R-PDX.bam fb46150a782748a9b74362390a4a8fa0 PPTC-NCH-WT-6-D-human PPTC-NCH-WT-6-D PPTC-NCH-WT-6-R PDX P0189 NCH-WT-6-S13-1506 Wilms tumor PPTCNCHWT6 50-PPTCNCHWT6 NA Wilms Wilms Wilms Wilms NA WT Renal tumor Wilms Renal renal renal solid Houghton PPTC-NCH-WT-6 PPTC-NCH-WT-6-D PPTC-NCH-WT-6-R No No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 1 years 1 Unknown European L. Kidney L. Kidney Not noted Stage 1 Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous;left flank NA
yes yes yes yes yes PPTC-NCH-WT-7-D.SNPFinalReports.txt PPTC-NCH-WT-7-D yes PPTC-NCH-WT-7-D-human.bam NA PPTC-NCH-WT-7-D-human.bam e29a8123578f990f1a30e590229f68e7 PPTC-NCH-WT-7-D-mouse.bam PPTC-NCH-WT-7-R-human.bam 90e13d993d63b8010dccf26abc180e1d PPTC-NCH-WT-7-R-mouse.bam yes PPTC-NCH-WT-7-R.human.genes.fpkm_tracking PPTCNCHWT7-D-PDX.bam e7bee8989f3cb747bc108aa7042c797f PPTCNCHWT7-R-PDX.bam 26a2ca8513dd2cb8ecbd720b3ec19f45 PPTC-NCH-WT-7-D-human PPTC-NCH-WT-7-D PPTC-NCH-WT-7-R PDX P0190 NCH-WT-7 Relapse Wilms PPTCNCHWT7 50-PPTCNCHWT7 NA Wilms Wilms Wilms Wilms NA WT Renal tumor Wilms Renal renal renal solid Houghton PPTC-NCH-WT-7 PPTC-NCH-WT-7-D PPTC-NCH-WT-7-R No No No No Yes Yes Yes NA Male Relapse Relapse Second 5 Years 5 Unknown European Kidney Lung metastasis Not noted Metastatic Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-NCH-WT-8-D.SNPFinalReports.txt PPTC-NCH-WT-8-D yes PPTCNCHWT8-D-human.bam FALSE PPTC-NCH-WT-8-D-human.bam 89634c8bf9843994d118b310c9a7a2c8 PPTC-NCH-WT-8-D-mouse.bam PPTC-NCH-WT-8-R-human.bam b1f960196c525ce72b260c35f21a44eb PPTC-NCH-WT-8-R-mouse.bam yes PPTC-NCH-WT-8-R.human.genes.fpkm_tracking PPTCNCHWT8-D-PDX.bam c5d3873a69c41834d8275022dbf0e662 PPTCNCHWT8-R-PDX.bam 0cde4172c4f0289fad8337121b68e792 PPTC-NCH-WT-8-D-human PPTC-NCH-WT-8-D PPTC-NCH-WT-8-R PDX P0191 NCH-WT-8-S13-3700 Wilms PPTCNCHWT8 50-PPTCNCHWT8 NA Wilms Wilms Wilms Wilms NA WT Renal tumor Wilms Renal renal renal solid Houghton PPTC-NCH-WT-8 PPTC-NCH-WT-8-D PPTC-NCH-WT-8-R No No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 2 years 2 Unknown European R. Kidney R. Kidney Triphasic, FH Triphasic, FH Stage 1 Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous;left flank NA
yes yes yes yes yes PPTC-NCI-ASPS-D.SNPFinalReports.txt PPTC-NCI-ASPS-D yes PPTC-NCI-ASPS-D-human.bam NA PPTC-NCI-ASPS-D-human.bam 2e7ae7c7d3e60c83bd066fd426695b51 PPTC-NCI-ASPS-D-mouse.bam PPTC-NCI-ASPS-R-human.bam fc22565e776a5828807bf3561f0d0f5e PPTC-NCI-ASPS-R-mouse.bam yes PPTC-NCI-ASPS-R.human.genes.fpkm_tracking PPTCNCIASPS-D-PDX.bam 51bc77bbdb953fb1b85640c88d69d3a6 PPTCNCIASPS-R-PDX.bam 8b4649ed704c8f6ebaabc89f1e249030 PPTC-NCI-ASPS-D-human PPTC-NCI-ASPS-D PPTC-NCI-ASPS-R PDX P0192 NCI-ASPS Alveolar Soft Part Sarcoma PPTCNCIASPS 81-PPTCNCIASPS NA ASPS ASPS ASPS ASPS NA ASPS Soft sarcoma Other Sarcoma Soft sarcoma rare rare solid Houghton PPTC-NCI-ASPS PPTC-NCI-ASPS-D PPTC-NCI-ASPS-R No No No No Yes Yes Yes Alveolar soft part sarcoma Unknown Unknown Unknown Third Unknown Unknown NA Unknown European Unknown Unknown Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes B17 NCH NA
yes yes yes yes yes PPTC-OS-1-D-1.SNPFinalReports.txt PPTC-OS-1-D yes TARGET-40-PPT067-60A-01D-human.bam NA TARGET-40-PPT067-60A-01D-human.bam bca9aa8594f3e32761db9f3edde4f8fd TARGET-40-PPT067-60A-01D-mouse.bam PPTC-OS-1-R-human.bam 771201068b9f3d7c734a82470913b3b2 PPTC-OS-1-R-mouse.bam yes PPTC-OS-1-R.human.genes.fpkm_tracking TARGET-40-PPT067-60A-01D.PDX.bam PPTCOS1-R-PDX.bam cecfbe11b7c8a622db65a441c3f24686 TARGET-40-PPT067-60A-01D-human TARGET-40-PPT067-60A-01D TARGET-40-PPT067-60A-01R XG P0193 OS-1 Osteosarcoma PPTCOS1 40-PPTCOS1 TARGET-40-PPT067 Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Gorlick PPTC-OS-1 PPTC-OS-1-D PPTC-OS-1-R No Yes Yes No Yes Yes No Osteosarcoma Male Diagnosis Diagnosis First 12 Unknown NA African American African Unknown Tibia Not noted Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes F1 Einstein NA
yes no yes yes yes PPTC-OS-17-D-1.SNPFinalReports.txt PPTC-OS-17-D yes TARGET-40-PPT070-60A-01D-human.bam NA TARGET-40-PPT070-60A-01D-human.bam eca6caba7fa0da562aaca29c6bb74c80 TARGET-40-PPT070-60A-01D-mouse.bam NA NA NA no NA TARGET-40-PPT070-60A-01D.PDX.bam NA NA TARGET-40-PPT070-60A-01D-human TARGET-40-PPT070-60A-01D NA XG P0194 OS-17 Osteosarcoma PPTCOS17 40-PPTCOS17 TARGET-40-PPT070 Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Gorlick PPTC-OS-17 PPTC-OS-17-D NA No Yes Yes No Yes Yes No Osteosarcoma Male Diagnosis Diagnosis First 197 months 16.42 European European Unknown Femur Not noted Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes Removed RNA - did not match DNA; possible new DNA for snp does not match exome, but does match RNA? F3, J6 Einstein, NCH NA
yes yes yes yes yes PPTC-OS-2-D-1.SNPFinalReports.txt PPTC-OS-2-D yes TARGET-40-PPT068-60A-01D-human.bam NA TARGET-40-PPT068-60A-01D-human.bam 16d401667503792388b3766315a57b84 TARGET-40-PPT068-60A-01D-mouse.bam PPTC-OS-2-R-human.bam 17268b14a8ecbf6d6a7e7394b274309e PPTC-OS-2-R-mouse.bam yes PPTC-OS-2-R.human.genes.fpkm_tracking TARGET-40-PPT068-60A-01D.PDX.bam PPTCOS2-R-PDX.bam bbfe3e5a3b441fa877c16b1fc0954899 TARGET-40-PPT068-60A-01D-human TARGET-40-PPT068-60A-01D TARGET-40-PPT068-60A-01R XG P0195 OS-2 Osteosarcoma PPTCOS2 40-PPTCOS2 TARGET-40-PPT068 Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Gorlick PPTC-OS-2 PPTC-OS-2-D PPTC-OS-2-R No Yes Yes No Yes Yes No Osteosarcoma Female Diagnosis Diagnosis First 175 months 14.58 European European Unknown Femur Not noted Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes F2 Einstein NA
yes no yes yes no NA yes TARGET-40-PPT074-60A-01D-human.bam NA TARGET-40-PPT074-60A-01D-human.bam c5019128889a21fdcb569a4e71708f4c TARGET-40-PPT074-60A-01D-mouse.bam NA NA NA no NA TARGET-40-PPT074-60A-01D.PDX.bam NA NA TARGET-40-PPT074-60A-01D-human TARGET-40-PPT074-60A-01D NA XG P0196 OS-25 Osteosarcoma PPTCOS25 40-PPTCOS25 TARGET-40-PPT074 Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-25 PPTC-OS-25-D NA No Yes No No No No No Osteosarcoma Male Diagnosis Diagnosis First Unknown Unknown NA Unknown NA Humerus Humerus Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes F30, J4 Einstein, NCH NA
yes yes yes yes yes PPTC-OS-29-D-1.SNPFinalReports.txt PPTC-OS-29-D yes TARGET-40-PPT071-60A-01D-human.bam NA TARGET-40-PPT071-60A-01D-human.bam a73eca9f461c9f5c00c01cf3421d6bdf TARGET-40-PPT071-60A-01D-mouse.bam PPTC-OS-29-R-human.bam 18d41209ab248fc332146e292408c121 PPTC-OS-29-R-mouse.bam yes PPTC-OS-29-R.human.genes.fpkm_tracking TARGET-40-PPT071-60A-01D.PDX.bam PPTCOS29-R-PDX.bam a2512dc41297f00bfaf8c4f786afb89b TARGET-40-PPT071-60A-01D-human TARGET-40-PPT071-60A-01D TARGET-40-PPT071-60A-01R XG P0197 OS-29 Osteosarcoma PPTCOS29 40-PPTCOS29 TARGET-40-PPT071 Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Gorlick PPTC-OS-29 PPTC-OS-29-D PPTC-OS-29-R No Yes Yes No Yes Yes No Osteosarcoma Male Relapse Relapse Second 18 Unknown NA European European Unknown Lung mass Not noted Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes F12 Einstein NA
yes yes yes yes yes PPTC-OS-31-D-1.SNPFinalReports.txt PPTC-OS-31-D yes TARGET-40-PPT072-60A-01D-human.bam NA TARGET-40-PPT072-60A-01D-human.bam 039549a6bf69fe08b58016052ce246e7 TARGET-40-PPT072-60A-01D-mouse.bam PPTC-OS-31-R-human.bam 614c4e8f575c09d8da2e5c9101456321 PPTC-OS-31-R-mouse.bam yes PPTC-OS-31-R.human.genes.fpkm_tracking TARGET-40-PPT072-60A-01D.PDX.bam PPTCOS31-R-PDX.bam c98724ecce8d80b13d08117d6799a671 TARGET-40-PPT072-60A-01D-human TARGET-40-PPT072-60A-01D TARGET-40-PPT072-60A-01R XG P0198 OS-31 Osteosarcoma PPTCOS31 40-PPTCOS31 TARGET-40-PPT072 Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Gorlick PPTC-OS-31 PPTC-OS-31-D PPTC-OS-31-R No Yes Yes No Yes Yes No Osteosarcoma Female Diagnosis Diagnosis First 5 Unknown NA African American African Unknown R. Distal Femur Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes F11 Einstein NA
yes yes yes yes yes PPTC-OS-32-D.SNPFinalReports.txt PPTC-OS-32-D yes PPTC-OS-32-D-human.bam NA PPTC-OS-32-D-human.bam a7fb6d8192e306bc76c3915f1b0581c5 PPTC-OS-32-D-mouse.bam PPTC-OS-32-R-human.bam 81f0417266fa8b7727e32ffae7377b9f PPTC-OS-32-R-mouse.bam yes PPTC-OS-32-R.human.genes.fpkm_tracking PPTCOS32-D-PDX.bam 548b3d2e14c2e33de47822cf47673cc7 PPTCOS32-R-PDX.bam 9d0f2042df817f14ee4c3f22c729d8dd PPTC-OS-32-D-human PPTC-OS-32-D PPTC-OS-32-R PDX P0199 OS-32 Osteosarcoma PPTCOS32 40-PPTCOS32 TARGET-40-PPT075 Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-32 PPTC-OS-32-D PPTC-OS-32-R No No No No Yes Yes Yes Osteosarcoma Female Diagnosis Diagnosis First 16 years 16 European European Tibia Tibia chondroblastic Chondroblastic Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Same patient as OS-36 and OS-36-SJ (32 = dx, 36 = relapse) F31 Einstein NA
yes yes yes yes yes PPTC-OS-33-D-1.SNPFinalReports.txt PPTC-OS-33-D yes TARGET-40-PPT073-60A-01D-human.bam NA TARGET-40-PPT073-60A-01D-human.bam b159724d30b27d2aa9df367287669271 TARGET-40-PPT073-60A-01D-mouse.bam PPTC-OS-33-R-human.bam a77a52e1d459de2b7a85d5be879ab11d PPTC-OS-33-R-mouse.bam yes PPTC-OS-33-R.human.genes.fpkm_tracking TARGET-40-PPT073-60A-01D.PDX.bam PPTCOS33-R-PDX.bam e69cf970f75d476c45bab4cc7c7fe91a TARGET-40-PPT073-60A-01D-human TARGET-40-PPT073-60A-01D TARGET-40-PPT073-60A-01R XG P0200 OS-33 Osteosarcoma PPTCOS33 40-PPTCOS33 TARGET-40-PPT073 Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Gorlick PPTC-OS-33 PPTC-OS-33-D PPTC-OS-33-R No Yes Yes No Yes Yes No Osteosarcoma Female Diagnosis Diagnosis First 7 Unknown NA European European Unknown R. Humerus Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes F10 Einstein NA
yes yes yes yes yes PPTC-OS-34-D-1.SNPFinalReports.txt PPTC-OS-34-D yes TARGET-40-PPT076-60A-01D-human.bam NA TARGET-40-PPT076-60A-01D-human.bam e264b1ae4efbd0371c2e3ca63b35f728 TARGET-40-PPT076-60A-01D-mouse.bam PPTC-OS-34-R-human.bam 4ec9320bd1f9f74e788e448e7cd8da70 PPTC-OS-34-R-mouse.bam yes PPTC-OS-34-R.human.genes.fpkm_tracking TARGET-40-PPT076-60A-01D.PDX.bam PPTCOS34-R-PDX.bam a4557787e8e2e33df7f5193659fa9bfc TARGET-40-PPT076-60A-01D-human TARGET-40-PPT076-60A-01D TARGET-40-PPT076-60A-01R XG P0201 OS-34 Osteosarcoma PPTCOS34 40-PPTCOS34 TARGET-40-PPT076 Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-34 PPTC-OS-34-D PPTC-OS-34-R No Yes No No Yes Yes No Female Female Diagnosis Diagnosis Third 168 months 14 Unknown European L. Femur L. Femur Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Same patient as OS-34-SJ F32 Einstein NA
yes yes yes yes yes PPTC-OS-34-SJ-D.SNPFinalReports.txt PPTC-OS-34-SJ-D yes PPTC-OS-34-SJ-D-human.bam NA PPTC-OS-34-SJ-D-human.bam 2aee9c81d5015b4e13b599d2d3569ce3 PPTC-OS-34-SJ-D-mouse.bam PPTC-OS-34-SJ-R-human.bam 9a365d385d11504054026e4335bdfc5a PPTC-OS-34-SJ-R-mouse.bam yes PPTC-OS-34-SJ-R.human.genes.fpkm_tracking PPTCOS34SJ-D-PDX.bam 7d63176c944bd8db6b32dda9cd7ba319 PPTCOS34SJ-R-PDX.bam 6297306a6e30b7470bc110074a77ea63 PPTC-OS-34-SJ-D-human PPTC-OS-34-SJ-D PPTC-OS-34-SJ-R PDX P0201 OS-34-SJ Osteosarcoma PPTCOS34SJ 40-PPTCOS34SJ NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-34-SJ PPTC-OS-34-SJ-D PPTC-OS-34-SJ-R No No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 14 years 14 Unknown European L. Femur L. Femur Not noted Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes Same patient as OS-34 NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes no yes yes no NA yes TARGET-40-PPT077-60A-01D-human.bam NA TARGET-40-PPT077-60A-01D-human.bam f1234c2262496298596db63ce87eab21 TARGET-40-PPT077-60A-01D-mouse.bam NA NA NA no NA TARGET-40-PPT077-60A-01D.PDX.bam NA NA TARGET-40-PPT077-60A-01D-human TARGET-40-PPT077-60A-01D NA XG P0199 OS-36 Osteosarcoma PPTCOS36 40-PPTCOS36 TARGET-40-PPT077 Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-36 PPTC-OS-36-D NA No Yes No No No No No Osteosarcoma Female Relapse Relapse Second 252 months 21 European European Unknown Lung met Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Same patient as OS-32 and OS-36-SJ (32 = dx, 36 = relapse) F33 Einstein NA
yes no yes yes yes PPTC-OS-36-SJ-D.SNPFinalReports.txt PPTC-OS-36-SJ-D yes PPTC-OS-36-SJ-D-human.bam NA PPTC-OS-36-SJ-D-human.bam 6eee617bd4f4c972fa6abcc655748505 PPTC-OS-36-SJ-D-mouse.bam NA NA NA no NA PPTCOS36SJ-D-PDX.bam 851fd696c128cacbba4c49493bc9667f NA NA PPTC-OS-36-SJ-D-human PPTC-OS-36-SJ-D NA PDX P0199 OS-36-SJ Osteosarcoma PPTCOS36SJ 40-PPTCOS36SJ NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-36-SJ PPTC-OS-36-SJ-D NA No No No No No No Yes NA Female Relapse Relapse Second 21 years 21 European European Tibia Lung met metastatic Chondroblastic Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Same patient as OS-32 and OS-36 (32 = dx, 36 = relapse) NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-OS-41-D.SNPFinalReports.txt PPTC-OS-41-D yes PPTC-OS-41-D-human.bam NA PPTC-OS-41-D-human.bam 909f43af6317f64ac646b38520fae7f1 PPTC-OS-41-D-mouse.bam PPTC-OS-41-R-human.bam 16f90a062d03f49c80c1a40e6131aad4 PPTC-OS-41-R-mouse.bam yes PPTC-OS-41-R.human.genes.fpkm_tracking PPTCOS41-D-PDX.bam 850c0468f9316b1d1dcc3a7046b79e0a PPTCOS41-R-PDX.bam d51686530a4e2612e63eb62b40fda97c PPTC-OS-41-D-human PPTC-OS-41-D PPTC-OS-41-R PDX P0202 OS-41 PPTCOS41 40-PPTCOS41 NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-41 PPTC-OS-41-D PPTC-OS-41-R Male Diagnosis Diagnosis First 13 years 13 Unknown European Tibia Tibia Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes UTHSC NA
yes yes yes yes yes PPTC-OS-42-D.SNPFinalReports.txt PPTC-OS-42-D yes PPTC-OS-42-D-human.bam NA PPTC-OS-42-D-human.bam 3d3d9bda82d4c1535e99be1528b70170 PPTC-OS-42-D-mouse.bam PPTC-OS-42-R-human.bam 59082778a966da5a061a31354d6ebfdd PPTC-OS-42-R-mouse.bam yes PPTC-OS-42-R.human.genes.fpkm_tracking PPTCOS42-D-PDX.bam cd70545a348e7d43d55fc0f58b2d490e PPTCOS42-R-PDX.bam de3136af459ba63961459f110f680ac5 PPTC-OS-42-D-human PPTC-OS-42-D PPTC-OS-42-R PDX P0203 OS-42 Osteosarcoma PPTCOS42 40-PPTCOS42 NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Gorlick PPTC-OS-42 PPTC-OS-42-D PPTC-OS-42-R NA NA NA NA NA NA NA Osteosarcoma Male Relapse Relapse Second 288 months 24 European European Unknown Lung met Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes F13 Einstein NA
yes yes yes yes yes PPTC-OS-43-TPMX-D-1.SNPFinalReports.txt PPTC-OS-43-TPMX-D yes TARGET-40-PPT078-60A-01D-human.bam NA TARGET-40-PPT078-60A-01D-human.bam 56c68a2a9296f7b6709c47ceeb9bae77 TARGET-40-PPT078-60A-01D-mouse.bam PPTC-OS-43-TPMX-R-human.bam b7049ee5f42b1611cb648e5df91ee06b PPTC-OS-43-TPMX-R-mouse.bam yes PPTC-OS-43-TPMX-R.human.genes.fpkm_tracking TARGET-40-PPT078-60A-01D.PDX.bam PPTCOS43TPMX-R-PDX.bam 53c2d9685ec8bf62b7727bd8650e6e5c TARGET-40-PPT078-60A-01D-human TARGET-40-PPT078-60A-01D TARGET-40-PPT078-60A-01R XG P0204 OS-43-TPMX Osteosarcoma PPTCOS43TPMX 40-PPTCOS43TPMX TARGET-40-PPT078 Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-43-TPMX PPTC-OS-43-TPMX-D PPTC-OS-43-TPMX-R No Yes No No Yes Yes No Osteosarcoma Male Diagnosis Diagnosis First 156 months 13 African American European Unknown Lung met Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes F14 Einstein p20, 22.3.07 - frozen NA
yes yes yes yes yes PPTC-OS-44-D.SNPFinalReports.txt PPTC-OS-44-D yes PPTC-OS-44-D-human.bam NA PPTC-OS-44-D-human.bam 70e81410e488b1ca3ae6ea3cac3c458b PPTC-OS-44-D-mouse.bam PPTC-OS-44-R-human.bam 1aa5e04d50a778c36cc0a70e30f45bc7 PPTC-OS-44-R-mouse.bam yes PPTC-OS-44-R.human.genes.fpkm_tracking PPTCOS44-D-PDX.bam 4502fca43533c7ad48bdd5ee58a7d7bd PPTCOS44-R-PDX.bam c5e677c30b2a9d67d9b9487f7eef837a PPTC-OS-44-D-human PPTC-OS-44-D PPTC-OS-44-R PDX P0205 OS-44 PPTCOS44 40-PPTCOS44 NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-44 PPTC-OS-44-D PPTC-OS-44-R Female Post-treatment Post-treatment Third 17 years 17 Unknown European Unknown Lung met Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes UTHSC NA
yes yes yes yes yes PPTC-OS-44-KPDX-x-D-1.SNPFinalReports.txt PPTC-OS-44-KPDX-x-D yes TARGET-40-PPT079-60A-01D-human.bam NA TARGET-40-PPT079-60A-01D-human.bam 1509b47880025400f84f8e1f79df23fa TARGET-40-PPT079-60A-01D-mouse.bam PPTC-OS-44-KPDX-x-R-human.bam ab2b253b77194605d5ef3ee8cb2254c7 PPTC-OS-44-KPDX-x-R-mouse.bam yes PPTC-OS-44-KPDX-x-R.human.genes.fpkm_tracking TARGET-40-PPT079-60A-01D.PDX.bam PPTCOS44KPDXx-R-PDX.bam cb0cee937c529b5d7a55aee32a1bc613 TARGET-40-PPT079-60A-01D-human TARGET-40-PPT079-60A-01D TARGET-40-PPT079-60A-01R XG P0206 OS-44-KPDX-x PPTCOS44KPDXx 40-PPTCOS44KPDXx TARGET-40-PPT079 Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-44-KPDX-x PPTC-OS-44-KPDX-x-D PPTC-OS-44-KPDX-x-R No Yes No No Yes Yes No NA Male Diagnosis Diagnosis First 8 years 8 Unknown European Distal femur Distal femur osteoblastic Osteoblastic Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC NA
yes yes yes yes yes PPTC-OS-45-TSXpr1-D-1.SNPFinalReports.txt PPTC-OS-45-TSXpr1-D yes TARGET-40-PPT080-60A-01D-human.bam NA TARGET-40-PPT080-60A-01D-human.bam 58289ecbd292fd2c53b8d0831e4192d1 TARGET-40-PPT080-60A-01D-mouse.bam PPTC-OS-45-TSXpr1-R-human.bam 88f61fd9bfd48651ce3526dd5d754283 PPTC-OS-45-TSXpr1-R-mouse.bam yes PPTC-OS-45-TSXpr1-R.human.genes.fpkm_tracking TARGET-40-PPT080-60A-01D.PDX.bam PPTCOS45TSXpr1-R-PDX.bam 7fb5823ad865d7d60d7dd51c862acf8e TARGET-40-PPT080-60A-01D-human TARGET-40-PPT080-60A-01D TARGET-40-PPT080-60A-01R XG P0207 OS-45-TSX-pr1 Osteosarcoma PPTCOS45TSXpr1 40-PPTCOS45TSXpr1 TARGET-40-PPT080 Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-45-TSXpr1 PPTC-OS-45-TSXpr1-D PPTC-OS-45-TSXpr1-R No Yes No No Yes Yes No NA Male Diagnosis Diagnosis First 17 years 17 Unknown European Distal femur Distal femur osteoblastic Osteoblastic Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes F16 Einstein p16, 17.2.11 NA
yes yes yes yes yes PPTC-OS-46-D.SNPFinalReports.txt PPTC-OS-46-D yes PPTC-OS-46-D-human.bam NA PPTC-OS-46-D-human.bam 718df77ff8aff476961527ca95a37900 PPTC-OS-46-D-mouse.bam PPTC-OS-46-R-human.bam 389a41a158b638e6a6e7051a782e3a07 PPTC-OS-46-R-mouse.bam yes PPTC-OS-46-R.human.genes.fpkm_tracking PPTCOS46-D-PDX.bam 53aa8a4d3d0b207e019c36eee8698c7e PPTCOS46-R-PDX.bam 516d35c834ddc64e246abcb7ba128737 PPTC-OS-46-D-human PPTC-OS-46-D PPTC-OS-46-R PDX P0208 OS-46 Osteosarcoma PPTCOS46 40-PPTCOS46 NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-46 PPTC-OS-46-D PPTC-OS-46-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 144 months 12 Unknown African Distal femur Distal femur Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes UTHSC NA
yes yes yes yes yes PPTC-OS-46-AOX-D.SNPFinalReports.txt PPTC-OS-46-AOX-D yes PPTC-OS-46-AOX-D-human.bam NA PPTC-OS-46-AOX-D-human.bam a79621c8cac0f6963d043c08eb68c923 PPTC-OS-46-AOX-D-mouse.bam PPTC-OS-46-AOX-R-human.bam 7b772e530fab6f2b5af44f9cf67907be PPTC-OS-46-AOX-R-mouse.bam yes PPTC-OS-46-AOX-R.human.genes.fpkm_tracking PPTCOS46AOX-D-PDX.bam 5b622cd4b74917fa7eefb1263f56c879 PPTCOS46AOX-R-PDX.bam 5863a07c8c9cbc6db197d21402e45134 PPTC-OS-46-AOX-D-human PPTC-OS-46-AOX-D PPTC-OS-46-AOX-R PDX P0209 OS-46-AOX Osteosarcoma PPTCOS46AOX 40-PPTCOS46AOX NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-46-AOX PPTC-OS-46-AOX-D PPTC-OS-46-AOX-R No No No No Yes Yes Yes Osteosarcoma Male Diagnosis Diagnosis First 144 months 12 Unknown European Distal femur Distal femur Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes F17 Einstein p12, 15.8.07 NA
yes yes yes yes yes PPTC-OS-47-SJ-D.SNPFinalReports.txt PPTC-OS-47-SJ-D yes PPTC-OS-47-SJ-D-human.bam NA PPTC-OS-47-SJ-D-human.bam b5b1a002b77baac6b72280039557450f PPTC-OS-47-SJ-D-mouse.bam PPTC-OS-47-SJ-R-human.bam 5a588b38341cdbf16fe4d55bae2a69c6 PPTC-OS-47-SJ-R-mouse.bam yes PPTC-OS-47-SJ-R.human.genes.fpkm_tracking PPTC-OS-47-SJ-D.PDX.bam PPTC-OS-47-SJ-R.PDX.bam PPTC-OS-47-SJ-D-human PPTC-OS-47-SJ-D PPTC-OS-47-SJ-R PDX P0210 OS-47-SJ Osteosarcoma PPTCOS47SJ 40-PPTCOS47SJ NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-47-SJ PPTC-OS-47-SJ-D PPTC-OS-47-SJ-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 10 months 0.83 European African L. Distal Femur L. Distal Femur Chondroblastic High-grade Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-OS-48-D.SNPFinalReports.txt PPTC-OS-48-D yes PPTC-OS-48-D-human.bam NA PPTC-OS-48-D-human.bam 9c573d8354663207e1e5127958a9380c PPTC-OS-48-D-mouse.bam PPTC-OS-48-R-human.bam bb0b73b7d6bbcf54958a700ef3cf6d0b PPTC-OS-48-R-mouse.bam yes PPTC-OS-48-R.human.genes.fpkm_tracking PPTCOS48-D-PDX.bam fea24fc9c6dfb5715352b0f4300d7c09 PPTCOS48-R-PDX.bam 5741b64dd2c0c546ad04c668259445ea PPTC-OS-48-D-human PPTC-OS-48-D PPTC-OS-48-R PDX P0211 OS-48 PPTCOS48 40-PPTCOS48 NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-48 PPTC-OS-48-D PPTC-OS-48-R Female Unknown Unknown Third 14 years 14 Unknown European Unknown Lung met Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes UTHSC NA
yes yes yes yes yes PPTC-OS-49-SJ-D.SNPFinalReports.txt PPTC-OS-49-SJ-D yes PPTC-OS-49-SJ-D-human.bam NA PPTC-OS-49-SJ-D-human.bam 98a253ebd539e19e73b07ce4ce971624 PPTC-OS-49-SJ-D-mouse.bam PPTC-OS-49-SJ-R-human.bam 2cf7ab04bcf2d72f28ce399a2cd9fe95 PPTC-OS-49-SJ-R-mouse.bam yes PPTC-OS-49-SJ-R.human.genes.fpkm_tracking PPTC-OS-49-SJ-D.PDX.bam PPTC-OS-49-SJ-R.PDX.bam PPTC-OS-49-SJ-D-human PPTC-OS-49-SJ-D PPTC-OS-49-SJ-R PDX P0212 OS-49-SJ Osteosarcoma PPTCOS49SJ 40-PPTCOS49SJ NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-49-SJ PPTC-OS-49-SJ-D PPTC-OS-49-SJ-R No No No No Yes Yes Yes NA Male Diagnosis Diagnosis First 8 years 8 African American African R. distal femur R. Distal Femur Not noted Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-OS-49-STTX-sc-D-1.SNPFinalReports.txt PPTC-OS-49-STTX-sc-D yes PPTCOS49STTXsc-D-human.bam FALSE PPTC-OS-49-STTX-sc-D-human.bam c13cf18d1f14f6a1d4822ccbfca24729 PPTC-OS-49-STTX-sc-D-mouse.bam PPTC-OS-49-STTX-sc-R-human.bam 5b877f85e45480d907535300ed785ed2 PPTC-OS-49-STTX-sc-R-mouse.bam yes PPTC-OS-49-STTX-sc-R.human.genes.fpkm_tracking PPTCOS49STTXsc-D-PDX.bam c66d6b40101ace6b3adcca3fdc2a822d PPTCOS49STTXsc-R-PDX.bam c0a99f00b81fff75288be8e701f92699 PPTC-OS-49-STTX-sc-D-human PPTC-OS-49-STTX-sc-D PPTC-OS-49-STTX-sc-R XG P0213 OS-49-STTX-sc Osteosarcoma PPTCOS49STTXsc 40-PPTCOS49STTXsc TARGET-40-PPT081 Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-49-STTX-sc PPTC-OS-49-STTX-sc-D PPTC-OS-49-STTX-sc-R No No No No Yes Yes Yes Osteosarcoma Male Diagnosis Diagnosis First 40 years 40 Unknown European Os frontalis Os frontalis fibroblastic Fibroblastic Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes From Dr. Oystein in Oslo; Adult F20 Einstein p1, 15.5.05 NA
yes no yes yes yes PPTC-OS-50-SJ-D.SNPFinalReports.txt PPTC-OS-50-SJ-D yes PPTC-OS-50-SJ-D-human.bam NA PPTC-OS-50-SJ-D-human.bam b062c1086a55d1c15e9a75517a5ad79d PPTC-OS-50-SJ-D-mouse.bam NA NA NA no NA PPTC-OS-50-SJ-D.PDX.bam NA NA PPTC-OS-50-SJ-D-human PPTC-OS-50-SJ-D NA PDX P0214 OS-50-SJ Osteosarcoma PPTCOS50SJ 40-PPTCOS50SJ NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-50-SJ PPTC-OS-50-SJ-D NA No No No No No No Yes NA Female Relapse Relapse Second 16 months NA European European L. Proximal Tibia L. Proximal Tibia Not noted Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-OS-51-CHLX-D-1.SNPFinalReports.txt PPTC-OS-51-CHLX-D no NA NA NA NA PPTC-OS-51-CHLX-R-human.bam 8376238837ed075909407ab523f4e8bd PPTC-OS-51-CHLX-R-mouse.bam yes PPTC-OS-51-CHLX-R.human.genes.fpkm_tracking NA NA PPTCOS51CHLX-R-PDX.bam 1a974d975d42bad3d11a0cca82147dfa NA NA PPTCOS51CHLX-R XG P0215 OS-51-CHLX Osteosarcoma PPTCOS51CHLX 40-PPTCOS51CHLX NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-51-CHLX NA PPTC-OS-51-CHLX-R No Yes No No Yes Yes No Osteosarcoma Male Post-treatment Post-treatment Third 192 months 16 European European Distal femur Distal femur Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes F22 Einstein p2, 13.1.11 NA
yes yes yes yes yes PPTC-OS-52-SJ-D.SNPFinalReports.txt PPTC-OS-52-SJ-D yes PPTC-OS-52-SJ-D-human.bam NA PPTC-OS-52-SJ-D-human.bam cd786f35999111bdda75a7f2c9e53ff3 PPTC-OS-52-SJ-D-mouse.bam PPTC-OS-52-SJ-R-human.bam 0069e8efe2086228476064fdcb61cbbb PPTC-OS-52-SJ-R-mouse.bam yes PPTC-OS-52-R.human.genes.fpkm_tracking PPTC-OS-52-SJ-D.PDX.bam PPTC-OS-52-SJ-R.PDX.bam PPTC-OS-52-SJ-D-human PPTC-OS-52-SJ-D PPTC-OS-52-SJ-R PDX P0216 OS-52-SJ Osteosarcoma PPTCOS52SJ 40-PPTCOS52SJ NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-52-SJ PPTC-OS-52-SJ-D PPTC-OS-52-SJ-R No No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 14 months 1.17 European European L. Proximal Tibia L. Proximal Tibia Not noted Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-OS-54-OHS-x-D-1.SNPFinalReports.txt PPTC-OS-54-OHS-x-D yes TARGET-40-PPT084-60A-01D-human.bam NA TARGET-40-PPT084-60A-01D-human.bam 46d14d6537970c3b415cfbf2a24a1025 TARGET-40-PPT084-60A-01D-mouse.bam PPTC-OS-54-OHS-x-R-human.bam 08f77787e4773bd61663356c37ff8544 PPTC-OS-54-OHS-x-R-mouse.bam yes PPTC-OS-54-OHS-x-R.human.genes.fpkm_tracking TARGET-40-PPT084-60A-01D.PDX.bam PPTCOS54OHSx-R-PDX.bam TARGET-40-PPT084-60A-01D-human TARGET-40-PPT084-60A-01D PPTC-OS-54-OHS-x-R XG P0217 OS-54-OHS-x PPTCOS54OHSx 40-PPTCOS54OHSx TARGET-40-PPT084 Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-54-OHS-x PPTC-OS-54-OHS-x-D PPTC-OS-54-OHS-x-R No Yes No No Yes Yes No NA Male Diagnosis Diagnosis First 16 years 16 Unknown European Distal femur Distal femur osteoblastic Osteoblastic Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC NA
yes yes yes yes yes PPTC-OS-54-SJ-D.SNPFinalReports.txt PPTC-OS-54-SJ-D yes PPTC-OS-54-SJ-D-human.bam NA PPTC-OS-54-SJ-D-human.bam 512f0b9cde69a48efb8d45791a30a0f8 PPTC-OS-54-SJ-D-mouse.bam PPTC-OS-54-SJ-R-human.bam 7d3b6cfce0022f674b9bcda227f836e8 PPTC-OS-54-SJ-R-mouse.bam yes PPTC-OS-54-SJ-R.human.genes.fpkm_tracking PPTC-OS-54-SJ-D.PDX.bam PPTCOS54-R-PDX.bam b4e37ae391deb40b5f4c71fca11caf37 PPTC-OS-54-SJ-D-human PPTC-OS-54-SJ-D PPTC-OS-54-SJ-R PDX P0218 OS-54-SJ osteosarcoma PPTCOS54SJ 40-PPTCOS54SJ NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-54-SJ PPTC-OS-54-SJ-D PPTC-OS-54-SJ-R No No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 14 months 1.17 Mixed EastAsian R. distal femur R. Distal Femur Chondroblastic Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-OS-55-D.SNPFinalReports.txt PPTC-OS-55-D yes PPTCOS55-D-human.bam FALSE PPTC-OS-55-D-human.bam 504e7c1105623fb8694b4e80939c52e2 PPTC-OS-55-D-mouse.bam PPTC-OS-55-R-human.bam ce1c60931576ceb37276732995240061 PPTC-OS-55-R-mouse.bam yes PPTC-OS-55-R.human.genes.fpkm_tracking PPTCOS55-D-PDX.bam a8ebf279064c6a92d180cf462fb720e8 PPTCOS55-R-PDX.bam ad2c0406f39f911e367383c1b14f62dd PPTC-OS-55-D-human PPTC-OS-55-D PPTC-OS-55-R PDX P0219 OS-55 PPTCOS55 40-PPTCOS55 NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-55 PPTC-OS-55-D PPTC-OS-55-R No No No No Yes Yes Yes NA Male Unknown Unknown Third 216 months 18 Other Mixed_or_Unknown Distal femur Distal femur Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes, Partial NA UTHSC NA
yes yes yes yes yes PPTC-OS-55-SBX-D.SNPFinalReports.txt PPTC-OS-55-SBX-D yes PPTCOS55SBX-D-human.bam FALSE PPTC-OS-55-SBX-D-human.bam f95ab19a6de2e4cb9f83e30838fa72e6 PPTC-OS-55-SBX-D-mouse.bam PPTC-OS-55-SBX-R-human.bam 6395eaedafcc720b3dec32b454d0501a PPTC-OS-55-SBX-R-mouse.bam yes PPTC-OS-55-SBX-R.human.genes.fpkm_tracking PPTCOS55SBX-D-PDX.bam 0e468e1746742c9e0b2d8576d7bce542 PPTCOS55SBX-R-PDX.bam 61317878ff82734c9279ace6e934b603 PPTC-OS-55-SBX-D-human PPTC-OS-55-SBX-D PPTC-OS-55-SBX-R PDX P0220 OS-55-SBX Osteosarcoma PPTCOS55SBX 40-PPTCOS55SBX NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-55-SBX PPTC-OS-55-SBX-D PPTC-OS-55-SBX-R No No No No Yes Yes Yes Osteosarcoma Male Diagnosis Diagnosis First 216 months 18 Other European Distal femur Distal femur Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes F26 Einstein p57, 29.12.10 NA
yes no yes yes yes PPTC-OS-56-D.SNPFinalReports.txt PPTC-OS-56-D yes PPTCOS56-D-human.bam FALSE PPTC-OS-56-D-human.bam 21dbfc03cb18a13cbf512c491404b4d7 PPTC-OS-56-D-mouse.bam NA NA NA no NA PPTCOS56-D-PDX.bam 99cbddad4fc92ec898c704a9038e77b2 NA PPTC-OS-56-D-human PPTC-OS-56-D NA PDX P0221 OS-56 PPTCOS56 40-PPTCOS56 NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-56 PPTC-OS-56-D NA No No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 14 years 14 Unknown African Humerus Humerus Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Removed RNA - did not match DNA NA UTHSC NA
yes yes yes yes yes PPTC-OS-56-TTX-D.SNPFinalReports.txt PPTC-OS-56-TTX-D yes PPTCOS56TTX-D-human.bam FALSE PPTC-OS-56-TTX-D-human.bam f6205c37a2d9613a7c90d8c108099dc3 PPTC-OS-56-TTX-D-mouse.bam PPTC-OS-56-TTX-R-human.bam e445d1f83d6524d4a2166006b295a4f9 PPTC-OS-56-TTX-R-mouse.bam yes PPTC-OS-56-TTX-R.human.genes.fpkm_tracking PPTCOS56TTX-D-PDX.bam d4607596f2996362c4a8d7973aa6b457 PPTCOS56TTX-R-PDX.bam ab7e479ff1f468a75283870467c3d803 PPTC-OS-56-TTX-D-human PPTC-OS-56-TTX-D PPTC-OS-56-TTX-R PDX P0222 OS-56-TTX Osteosarcoma PPTCOS56TTX 40-PPTCOS56TTX NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-56-TTX PPTC-OS-56-TTX-D PPTC-OS-56-TTX-R No No No No Yes Yes Yes Osteosarcoma Male Diagnosis Diagnosis First 168 months 14 African American European Humerus Humerus Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes F27 Einstein p38, 30.12.10 NA
yes yes yes yes yes PPTC-OS-60-D.SNPFinalReports.txt PPTC-OS-60-D yes PPTCOS60-D-human.bam FALSE PPTC-OS-60-D-human.bam 8c09d5e097fb2a632c9ce5464e25b1e2 PPTC-OS-60-D-mouse.bam PPTC-OS-60-R-human.bam 6672c6f816ee3c7f66af6900ad5064d4 PPTC-OS-60-R-mouse.bam yes PPTC-OS-60-R.human.genes.fpkm_tracking PPTCOS60-D-PDX.bam dcb517410d11f3277acd44b383b7c616 PPTCOS60-R-PDX.bam 1602606417f7901f0350b234879f62f4 PPTC-OS-60-D-human PPTC-OS-60-D PPTC-OS-60-R PDX P0223 OS-60 PPTCOS60 40-PPTCOS60 NA Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Houghton PPTC-OS-60 PPTC-OS-60-D PPTC-OS-60-R No No No No Yes Yes Yes NA Male Relapse Relapse Second 21 years 21 Unknown European Arm Arm Not noted Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes NA UTHSC NA
yes yes yes yes yes PPTC-OS-9-D-1.SNPFinalReports.txt PPTC-OS-9-D no NA NA NA NA PPTC-OS-9-R-human.bam c0db45a2e025c4d2a1f5f4cb8fbc297a PPTC-OS-9-R-mouse.bam yes PPTC-OS-9-R.human.genes.fpkm_tracking NA NA PPTCOS9-R-PDX.bam da5279cc7cd8a88f2eba00970e84a338 NA NA PPTCOS9-R XG P0224 OS-9 Osteosarcoma PPTCOS9 40-PPTCOS9 TARGET-40-PPT069 Osteosarcoma Osteosarcoma Osteosarcoma Osteosarcoma NA OS Bone sarcoma Osteosarcoma Osteosarcoma osteosarcoma Osteosarcoma solid Gorlick PPTC-OS-9 NA PPTC-OS-9-R No Yes Yes No Yes Yes No Osteosarcoma Male Diagnosis Diagnosis First 11 Unknown NA European European Unknown R. Distal Femur Not noted Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes F9 Einstein NA
yes yes yes yes yes PPTC-TGT-020-D.SNPFinalReports.txt PPTC-TGT-020-D yes PPTCTGT020-D-human.bam FALSE PPTC-TGT-020-D-human.bam a9576b5c4141b2c773192d06af53178c PPTC-TGT-020-D-mouse.bam PPTC-TGT-020-R-human.bam 8a67c79283ee964aab57883fa5f1454d PPTC-TGT-020-R-mouse.bam yes PPTC-TGT-020-R.human.genes.fpkm_tracking PPTCTGT020-D-PDX.bam c6206f2500da60bdb50c31e1ffced8be PPTCTGT020-R-PDX.bam a2b2f4659ea98e56b1bb70a9571bcedd PPTC-TGT-020-D-human PPTC-TGT-020-D PPTC-TGT-020-R PDX P0225 PAKHZT Ph-likeALL PPTCTGT020 10-PPTCTGT020 NA ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-TGT-020 PPTC-TGT-020-D PPTC-TGT-020-R Yes No Yes No Yes Yes Yes NA Male Diagnosis Diagnosis First 167 months 13.92 Unknown SouthAsianOrHispanic Unknown Peripheral blood Not noted Unknown Unknown No Prior Tx NA NA 2002 2002 606 356 0 Yes TGT-020 NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 83 Yes (SNP) - ref is PDX 1o 103 83 4
yes yes yes yes yes PPTC-TGT-047-D.SNPFinalReports.txt PPTC-TGT-047-D yes PPTC-TGT-047-D-human.bam NA PPTC-TGT-047-D-human.bam eb368bb443c65420765d0d5cb99b17cf PPTC-TGT-047-D-mouse.bam PPTC-TGT-047-R-human.bam 3a44c036ea59427d6205ca654b12fd13 PPTC-TGT-047-R-mouse.bam yes PPTC-TGT-047-R.human.genes.fpkm_tracking PPTC-TGT-047-D.PDX.bam PPTCTGT047-R-PDX.bam 06668dfa376528203cdc85a9b0c1a31d PPTC-TGT-047-D-human PPTC-TGT-047-D PPTC-TGT-047-R PDX P0226 PAKRSL Ph-likeALL PPTCTGT047 10-PPTCTGT047 NA ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-TGT-047 PPTC-TGT-047-D PPTC-TGT-047-R Yes No Yes No Yes Yes Yes NA Female Diagnosis Diagnosis First 164 months 13.67 Unknown SouthAsianOrHispanic Unknown Peripheral blood Not noted Unknown Unknown No Prior Tx NA NA 2003 2003 706 671 0 Yes TGT-047 NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 72 Yes (SNP) - ref is PDX 1o 44 49 4
yes yes yes yes yes PPTC-TGT-052-D.SNPFinalReports.txt PPTC-TGT-052-D yes PPTC-TGT-052-D-human.bam NA PPTC-TGT-052-D-human.bam 2dbbbd8ba963c794a3f7b6dc6db82bb1 PPTC-TGT-052-D-mouse.bam PPTC-TGT-052-R-human.bam 0c4e63163b4b79310a678c953f3398cf PPTC-TGT-052-R-mouse.bam yes PPTC-TGT-052-R.human.genes.fpkm_tracking PPTC-TGT-052-D.PDX.bam PPTCTGT052-R-PDX.bam e0a5b6ca73599d9d5da1e462cd0a2760 PPTC-TGT-052-D-human PPTC-TGT-052-D PPTC-TGT-052-R PDX P0227 PAKSWW Ph-likeALL PPTCTGT052 10-PPTCTGT052 NA ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-TGT-052 PPTC-TGT-052-D PPTC-TGT-052-R Yes No Yes No Yes Yes Yes NA Male Diagnosis Diagnosis First 181 months 15.08 Unknown SouthAsianOrHispanic Unknown Peripheral blood Not noted Unknown Unknown No Prior Tx NA NA 2005 2005 1593 533 0 Yes TGT-052 NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 118 Yes (SNP) - ref is PDX 1o Negative 90 115 4
yes yes yes yes yes PPTC-TGT-065-D.SNPFinalReports.txt PPTC-TGT-065-D yes PPTC-TGT-065-D-human.bam NA PPTC-TGT-065-D-human.bam 64ad576d5f63e3731eabe88921c1f60f PPTC-TGT-065-D-mouse.bam PPTC-TGT-065-R-human.bam b68b8d02cb55c8f0aeeff3aaa23fb8b2 PPTC-TGT-065-R-mouse.bam yes PPTC-TGT-065-R.human.genes.fpkm_tracking PPTC-TGT-065-D.PDX.bam PPTCTGT065-R-PDX.bam 0642809d884add2e2fc8993c3b86eee9 PPTC-TGT-065-D-human PPTC-TGT-065-D PPTC-TGT-065-R PDX P0228 PAKVKK Ph-likeALL PPTCTGT065 10-PPTCTGT065 NA ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-TGT-065 PPTC-TGT-065-D PPTC-TGT-065-R Yes No Yes No Yes Yes Yes NA Male Diagnosis Diagnosis First 173 months 14.42 Unknown SouthAsianOrHispanic Unknown Peripheral blood Not noted Unknown Unknown No Prior Tx NA NA 2012 2012 4197 516 0 Yes TGT-065 NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 123 Yes (SNP) 62 71 4
yes yes yes yes yes PPTC-AF1D-XTP1-B-1-0-D-1.SNPFinalReports.txt PPTC-AF1D-XTP1-B-1-0-D yes PPTC-AF1D-XTP1-B-1-0-D-human.bam NA PPTC-AF1D-XTP1-B-1-0-D-human.bam 37fbf76d331089beb22711e0dc536025 PPTC-AF1D-XTP1-B-1-0-D-mouse.bam PPTC-AF1D-XTP1-B-1-0-R.human.bam c06b85fc65f2fe6d2b075a329546feec PPTC-AF1D-XTP1-B-1-0-R.mouse.bam yes PPTC-AF1D-XTP1-B-1-0-R.human.genes.fpkm_tracking PPTC-AF1D-XTP1-B-1-0-D.PDX.bam PPTC-AF1D-XTP1-B-1-0-R.PDX.bam PPTC-AF1D-XTP1-B-1-0-D-human PPTC-AF1D-XTP1-B-1-0-D PPTC-AF1D-XTP1-B-1-0-R PDX P0229 PAKYEP BCP-ALL PPTCAF1DXTP1B10 10-PPTCAF1DXTP1B10 PAKYEP ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-AF1D-XTP1-B-1-0 PPTC-AF1D-XTP1-B-1-0-D PPTC-AF1D-XTP1-B-1-0-R No No Yes No No No No NA Male Diagnosis Diagnosis First 32 months 2.67 Unknown Mixed_or_Unknown Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 2008 2008 2464 465 Yes TGT-084/ALL-119 NA CCI NSG NSG intravenous, either lateral tail vein 185 Yes (SNP) 173 70 4
yes yes yes yes yes PPTC-TGT-145-D.SNPFinalReports.txt PPTC-TGT-145-D yes PPTC-TGT-145-D-human.bam NA PPTC-TGT-145-D-human.bam 85524ed9f49fc16eb877384a462e8ea7 PPTC-TGT-145-D-mouse.bam PPTC-TGT-145-R-human.bam 3a95b0a7649130838d093cd309b95a88 PPTC-TGT-145-R-mouse.bam yes PPTC-TGT-145-R.human.genes.fpkm_tracking PPTC-TGT-145-D.PDX.bam PPTCTGT145-R-PDX.bam c6dc8362b75827174ba2a5ef2dc0500a PPTC-TGT-145-D-human PPTC-TGT-145-D PPTC-TGT-145-R PDX P0230 PALJDL Ph-likeALL PPTCTGT145 10-PPTCTGT145 NA ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-TGT-145 PPTC-TGT-145-D PPTC-TGT-145-R Yes No Yes No Yes Yes Yes NA Male Diagnosis Diagnosis First 38 months 3.17 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 2015 2015 4752 N/A 0 Yes TGT-145 NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 175 Yes (SNP) - ref is PDX 1o 49 62 4
yes yes yes yes yes PPTC-TGT-151-D.SNPFinalReports.txt PPTC-TGT-151-D yes PPTCTGT151-D-human.bam FALSE PPTC-TGT-151-D-human.bam 0869414e82876c3060f07c515a3cfe73 PPTC-TGT-151-D-mouse.bam PPTC-TGT-151-R-human.bam f2a96fe509d37645dc236773804dffe8 PPTC-TGT-151-R-mouse.bam yes PPTC-TGT-151-R.human.genes.fpkm_tracking PPTCTGT151-D-PDX.bam d5fd0bb937ac1d1b97fa88baf9eb7841 PPTCTGT151-R-PDX.bam f3537e849962b6ffd1a5623164cb7881 PPTC-TGT-151-D-human PPTC-TGT-151-D PPTC-TGT-151-R PDX P0231 PALKTY Ph-likeALL PPTCTGT151 10-PPTCTGT151 NA ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-TGT-151 PPTC-TGT-151-D PPTC-TGT-151-R Yes No No No Yes Yes Yes NA Female Diagnosis Diagnosis First 73 months 6.08 Unknown SouthAsianOrHispanic Unknown Peripheral blood Not noted Unknown Unknown No Prior Tx NA NA 2006 2006 1508 1311 0 Yes TGT-151 NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 143 Yes (SNP) 151 91 4
yes yes yes yes yes PPTC-TGT-161-D.SNPFinalReports.txt PPTC-TGT-161-D yes PPTCTGT161-D-human.bam FALSE PPTC-TGT-161-D-human.bam 4025771f7f9ff72d1c6c14d664f613f2 PPTC-TGT-161-D-mouse.bam PPTC-TGT-161-R-human.bam e00e5bee5f3ca289c7476bc068169eff PPTC-TGT-161-R-mouse.bam yes PPTC-TGT-161-R.human.genes.fpkm_tracking PPTCTGT161-D-PDX.bam 80f079fdf723056455368da9a395a08b PPTCTGT161-R-PDX.bam b3d7431018f4f387605da225901805e4 PPTC-TGT-161-D-human PPTC-TGT-161-D PPTC-TGT-161-R PDX P0232 PALLSD Ph-likeALL PPTCTGT161 10-PPTCTGT161 NA ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-TGT-161 PPTC-TGT-161-D PPTC-TGT-161-R Yes No Yes No Yes Yes Yes NA Male Diagnosis Diagnosis First 170 months 14.17 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 2010 2010 3060 690 0 Yes TGT-161 NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 77 Yes (SNP) - ref is PDX 1o 53 40 5
yes yes yes yes yes PPTC-TGT-174-D.SNPFinalReports.txt PPTC-TGT-174-D yes PPTCTGT174-D-human.bam FALSE PPTC-TGT-174-D-human.bam df02f01229b099453563bbc94a14f9ea PPTC-TGT-174-D-mouse.bam PPTC-TGT-174-R-human.bam 7c248c9340335a8e93cba4bb98ef9629 PPTC-TGT-174-R-mouse.bam yes PPTC-TGT-174-R.human.genes.fpkm_tracking PPTCTGT174-D-PDX.bam 767b2cfb98da1e463497e78197703328 PPTCTGT174-R-PDX.bam 65a77a1f80f385882070fe1b7b3f8bb2 PPTC-TGT-174-D-human PPTC-TGT-174-D PPTC-TGT-174-R PDX P0233 PALNTB BCP-ALL PPTCTGT174 10-PPTCTGT174 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-TGT-174 PPTC-TGT-174-D PPTC-TGT-174-R Yes No Yes No Yes Yes Yes NA Female Diagnosis Diagnosis First 104 months 8.67 Unknown European Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 2006 2006 1415 1027 0 Yes TGT-174 NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 78 Yes (SNP) 85 64 4
yes yes yes yes yes PPTC-TGT-196-D.SNPFinalReports.txt PPTC-TGT-196-D yes PPTCTGT196-D-human.bam FALSE PPTC-TGT-196-D-human.bam f9d056cf91c3e81105b177204d0ab6d1 PPTC-TGT-196-D-mouse.bam PPTC-TGT-196-R-human.bam 59516171050f0c9e6f870c7ce28cefe2 PPTC-TGT-196-R-mouse.bam yes PPTC-TGT-196-R.human.genes.fpkm_tracking PPTCTGT196-D-PDX.bam 8254d004ad31b0b7d084bc832b896610 PPTCTGT196-R-PDX.bam 1d6da52b36b6092baaf3237ee9c226ce PPTC-TGT-196-D-human PPTC-TGT-196-D PPTC-TGT-196-R PDX P0234 PALTWS BCP-ALL PPTCTGT196 10-PPTCTGT196 NA ALL BCP-ALL BCP-ALL BCP-ALL NA BLL ALL ALL leukemia leukemia BCP-ALL leukemia Lock PPTC-TGT-196 PPTC-TGT-196-D PPTC-TGT-196-R Yes No Yes No Yes Yes Yes NA Male Diagnosis Diagnosis First 170 months 14.17 Unknown SouthAsianOrHispanic Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 2009 2009 2703 N/A 0 Yes TGT-196 NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 120 Yes (SNP) 61 61 4
yes yes yes yes yes PPTC-TGT-258-D.SNPFinalReports.txt PPTC-TGT-258-D yes PPTCTGT258-D-human.bam FALSE PPTC-TGT-258-D-human.bam 8056d5c7fa2a06b19d226c2e7a496cc0 PPTC-TGT-258-D-mouse.bam PPTC-TGT-258-R-human.bam 53f845406dc91c8c138e7d7dfba5efc1 PPTC-TGT-258-R-mouse.bam yes PPTC-TGT-258-R.human.genes.fpkm_tracking PPTCTGT258-D-PDX.bam 885e770bb17daa0db423b5252fc5a82c PPTCTGT258-R-PDX.bam ca815e02087d545f06d2efc4a90e0834 PPTC-TGT-258-D-human PPTC-TGT-258-D PPTC-TGT-258-R PDX P0235 PAMDRM Ph-likeALL PPTCTGT258 10-PPTCTGT258 NA ALL Ph-likeALL Ph-likeALL Ph-likeALL NA BLLBCRABL1L ALL ALL leukemia leukemia Ph+ or Ph-like-ALL leukemia Lock PPTC-TGT-258 PPTC-TGT-258-D PPTC-TGT-258-R Yes No Yes No Yes Yes Yes NA Male Diagnosis Diagnosis First 95 months 7.92 Unknown Mixed_or_Unknown Unknown Bone marrow Not noted Unknown Unknown No Prior Tx NA NA 2006 2006 1216 997 0 Yes TGT-258 NA CCI NOD/SCID NOD/SCID and NSG intravenous, either lateral tail vein 84 Yes (SNP) - ref is PDX 1o 50 54 4
yes yes yes yes yes PPTC-Rh10-D-1.SNPFinalReports.txt PPTC-Rh10-D yes TARGET-80-PPT042-60A-01D-human.bam NA TARGET-80-PPT042-60A-01D-human.bam ed637695d89cab2de5468f605a5dedcc TARGET-80-PPT042-60A-01D-mouse.bam PPTC-Rh10-R-human.bam ccb22101c05bdd14e9e88485c6fe557a PPTC-Rh10-R-mouse.bam yes PPTC-Rh10-R.human.genes.fpkm_tracking TARGET-80-PPT042-60A-01D.PDX.bam PPTCRh10-R-PDX.bam d66c414309dab20e771e2a5fa93f68a4 TARGET-80-PPT042-60A-01D-human TARGET-80-PPT042-60A-01D TARGET-80-PPT042-60A-01R XG P0236 Rh-10 Alveolar Rhabdomyosarcoma PPTCRh10 80-PPTCRh10 TARGET-80-PPT042 Rhabdomyosarcoma Fusion+ RMS Fusion+ RMS Fusion+ RMS NA ARMS Soft sarcoma Rhabdomyosarcoma Soft sarcoma sarcoma arms solid Houghton PPTC-Rh10 PPTC-Rh10-D PPTC-Rh10-R No Yes Yes No Yes Yes No Sarcoma, In Vitro Female Relapse Relapse Second 15 years 15 European European Perineum Perineum Alveolar, PAX3-FOXO1 positive Stage 4 Unknown Chemotherapy with vincristine, cyclophosphamide, dactinomycin, and doxorubicin WT NA NA Unknown Unknown Unknown Unknown Unknown Yes B4, H28 NCH, UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-Rh-12-D-1.SNPFinalReports.txt PPTC-Rh-12-D yes TARGET-80-PPT050-60A-01D-human.bam NA TARGET-80-PPT050-60A-01D-human.bam 29a3745d158ef6afe671c7dc4fd82d61 TARGET-80-PPT050-60A-01D-mouse.bam PPTC-Rh-12-R-human.bam 9914bc05bc18a811338bcd2a3a6e6dfb PPTC-Rh-12-R-mouse.bam yes PPTC-Rh-12-R.human.genes.fpkm_tracking TARGET-80-PPT050-60A-01D.PDX.bam PPTCRh12-R-PDX.bam f5e81432c5314fdc91ab2c1f55af4793 TARGET-80-PPT050-60A-01D-human TARGET-80-PPT050-60A-01D TARGET-80-PPT050-60A-01R XG P0237 Rh-12 Embryonal Rhabdomyosarcoma PPTCRh12 80-PPTCRh12 TARGET-80-PPT050 Rhabdomyosarcoma Fusion- RMS Fusion- RMS Fusion- RMS NA ERMS Soft sarcoma Rhabdomyosarcoma Soft sarcoma sarcoma erms solid Houghton PPTC-Rh-12 PPTC-Rh-12-D PPTC-Rh-12-R No Yes No No Yes Yes No Rhabdomyosarcoma Male Diagnosis Diagnosis First Unknown Unknown NA Unknown European R. Buttock R. Buttock Embryonal Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes B18 NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-Rh30-D-1.SNPFinalReports.txt PPTC-Rh30-D yes TARGET-80-PPT045-60A-01D-human.bam NA TARGET-80-PPT045-60A-01D-human.bam 8b3f9bcf416530be11904e95d4a1aa2e TARGET-80-PPT045-60A-01D-mouse.bam PPTC-Rh30-R-human.bam 3d57089df82bddfe7a1787feb21be53f PPTC-Rh30-R-mouse.bam yes PPTC-Rh30-R.human.genes.fpkm_tracking TARGET-80-PPT045-60A-01D.PDX.bam PPTCRh30-R-PDX.bam 1d02ed1d020971cbdafa7f33f92f05ce TARGET-80-PPT045-60A-01D-human TARGET-80-PPT045-60A-01D TARGET-80-PPT045-60A-01R XG P0238 Rh-30 Alveolar Rhabdomyosarcoma PPTCRh30 80-PPTCRh30 TARGET-80-PPT045 Rhabdomyosarcoma Fusion+ RMS Fusion+ RMS Fusion+ RMS NA ARMS Soft sarcoma Rhabdomyosarcoma Soft sarcoma sarcoma arms solid Houghton PPTC-Rh30 PPTC-Rh30-D PPTC-Rh30-R No Yes Yes No Yes Yes No Sarcoma Male Diagnosis Diagnosis First 16 years 16 European European Posterior fossa Bone Marrow metastasis Positive for MyoD1 and myogenin Alveolar, PAX3-FOXO1 positive, MyoD1+, Myogenin+ Stage 4 Unknown No Prior Tx WT NA NA Unknown Unknown Unknown Unknown Unknown Yes Metastatic, Same patient as Rh-30R (dx) B7, H4 NCH, UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-Rh30R-D-1.SNPFinalReports.txt PPTC-Rh30R-D yes TARGET-80-PPT046-60A-01D-human.bam NA TARGET-80-PPT046-60A-01D-human.bam db31fb8772f85274bbb6a2d14290c941 TARGET-80-PPT046-60A-01D-mouse.bam PPTC-Rh30R-R-human.bam 8f6268a63c2db56e3da86f6517e356bc PPTC-Rh30R-R-mouse.bam yes PPTC-Rh30R-R.human.genes.fpkm_tracking TARGET-80-PPT046-60A-01D.PDX.bam PPTCRh30R-R-PDX.bam f6e5c70b7e77ba2cf1283efdcc8aca4b TARGET-80-PPT046-60A-01D-human TARGET-80-PPT046-60A-01D TARGET-80-PPT046-60A-01R XG P0238 Rh-30R Alveolar Rhabdomyosarcoma PPTCRh30R 80-PPTCRh30R TARGET-80-PPT046 Rhabdomyosarcoma Fusion+ RMS Fusion+ RMS Fusion+ RMS NA ARMS Soft sarcoma Rhabdomyosarcoma Soft sarcoma sarcoma arms solid Houghton PPTC-Rh30R PPTC-Rh30R-D PPTC-Rh30R-R No Yes Yes No Yes Yes No Sarcoma Male Relapse Relapse Second 16 years 16 European European Unknown Bone Marrow Alveolar, PAX3-FOXO1 positive Stage 4 Unknown Unknown Mutant A or G @ 865 causing a Tyr to Cys AA change @ 205. C or T @ position 1068 causing an Arg to Cys AA change @ 273. NA NA Unknown Unknown Unknown Unknown Unknown Yes Same patient as Rh-30 (relapse) B1 NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-Rh36-D-1.SNPFinalReports.txt PPTC-Rh36-D yes TARGET-80-PPT047-60A-01D-human.bam NA TARGET-80-PPT047-60A-01D-human.bam 2b761a1eeae46328807e3a195f841f02 TARGET-80-PPT047-60A-01D-mouse.bam PPTC-Rh36-R-human.bam 8ff6257a419aafc7055928c1f8be1a75 PPTC-Rh36-R-mouse.bam yes PPTC-Rh36-R.human.genes.fpkm_tracking TARGET-80-PPT047-60A-01D.PDX.bam PPTCRh36-R-PDX.bam 8510b28ad73bd0f35c0538c65da6f4fa TARGET-80-PPT047-60A-01D-human TARGET-80-PPT047-60A-01D TARGET-80-PPT047-60A-01R XG P0239 Rh-36 Embryonal Rhabdomyosarcoma PPTCRh36 80-PPTCRh36 TARGET-80-PPT047 Rhabdomyosarcoma Fusion- RMS Fusion- RMS Fusion- RMS NA ERMS Soft sarcoma Rhabdomyosarcoma Soft sarcoma sarcoma erms solid Houghton PPTC-Rh36 PPTC-Rh36-D PPTC-Rh36-R No Yes Yes No Yes Yes No Sarcoma Male Relapse Relapse Second 15 years 15 European European Paratesticular Paratesticular Embryonal Unknown Unknown DTIC/Dox Wild-type Polymorphism @466 [G/C]. Polymorphism @359 [GtoA] NA NA Unknown Unknown Unknown Unknown Unknown Yes B9 NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-Rh41-D-1.SNPFinalReports.txt PPTC-Rh41-D yes TARGET-80-PPT048-60A-01D-human.bam NA TARGET-80-PPT048-60A-01D-human.bam e9dcf42bf378f780574cc9b1d766ebd5 TARGET-80-PPT048-60A-01D-mouse.bam PPTC-Rh41-R-human.bam f69660caa2c6dbc872329ad930ddff84 PPTC-Rh41-R-mouse.bam yes PPTC-Rh41-R.human.genes.fpkm_tracking TARGET-80-PPT048-60A-01D.PDX.bam PPTCRh41-R-PDX.bam 25f5d21ad498acb879dea5967371db01 TARGET-80-PPT048-60A-01D-human TARGET-80-PPT048-60A-01D TARGET-80-PPT048-60A-01R XG P0240 Rh-41 Alveolar Rhabdomyosarcoma PPTCRh41 80-PPTCRh41 TARGET-80-PPT048 Rhabdomyosarcoma Fusion+ RMS Fusion+ RMS Fusion+ RMS NA ARMS Soft sarcoma Rhabdomyosarcoma Soft sarcoma sarcoma arms solid Houghton PPTC-Rh41 PPTC-Rh41-D PPTC-Rh41-R No Yes Yes No Yes Yes No Sarcoma, In Vitro Female Relapse Relapse Second 7 years 7 European European Liver Liver metastasis Positive for PAX-FKHR translocation Alveolar, PAX3-FOXO1 positive Stage 4 Unknown Post Chemotherapy, VAC+ Non-functional NA NA Unknown Unknown Unknown Unknown Unknown Yes B8, H2 NCH, UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-Rh65-D-1.SNPFinalReports.txt PPTC-Rh65-D yes TARGET-80-PPT049-60A-01D-human.bam NA TARGET-80-PPT049-60A-01D-human.bam 547b9d8498d74ff6fd9f79067e74e6d0 TARGET-80-PPT049-60A-01D-mouse.bam PPTC-Rh65-R-human.bam 654096500aa1d8df497a1abe09056c54 PPTC-Rh65-R-mouse.bam yes PPTC-Rh65-R.human.genes.fpkm_tracking TARGET-80-PPT049-60A-01D.PDX.bam PPTCRh65-R-PDX.bam 6a7474e739bc8e4e7e8d7faa35784a36 TARGET-80-PPT049-60A-01D-human TARGET-80-PPT049-60A-01D TARGET-80-PPT049-60A-01R XG P0241 Rh-65 Alveolar Rhabdomyosarcoma PPTCRh65 80-PPTCRh65 TARGET-80-PPT049 Rhabdomyosarcoma Fusion+ RMS Fusion+ RMS Fusion+ RMS NA ARMS Soft sarcoma Rhabdomyosarcoma Soft sarcoma sarcoma arms solid Houghton PPTC-Rh65 PPTC-Rh65-D PPTC-Rh65-R No Yes Yes No Yes Yes No Sarcoma Female Relapse Relapse Second 12 years 18.5 European European Unknown Cervical node Alveolar, PAX3-FOXO1 positive Unknown Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes B10 NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-Rh-70-D.SNPFinalReports.txt PPTC-Rh-70-D yes PPTC-Rh-70-D-human.bam NA PPTC-Rh-70-D-human.bam 2b0d8bebed4567cd91e5034098a76f76 PPTC-Rh-70-D-mouse.bam PPTC-Rh-70-R-human.bam aab27794fa79ce4b816f1f6659ae7495 PPTC-Rh-70-R-mouse.bam yes PPTC-Rh-70-R.human.genes.fpkm_tracking PPTC-Rh-70-D.PDX.bam PPTCRh70-R-PDX.bam 54925df985571d7d49fa668c54f093df PPTC-Rh-70-D-human PPTC-Rh-70-D PPTC-Rh-70-R XG P0242 Rh-70 Embryonal Rhabdomyosarcoma PPTCRh70 80-PPTCRh70 TARGET-80-PPT052 Rhabdomyosarcoma Fusion- RMS Fusion- RMS Fusion- RMS NA ERMS Soft sarcoma Rhabdomyosarcoma Soft sarcoma sarcoma erms solid Houghton PPTC-Rh-70 PPTC-Rh-70-D PPTC-Rh-70-R No No No No Yes Yes Yes Rhabdomyosarcoma Male Diagnosis Diagnosis First 4 years 4 African American European R. neck mass R. Neck mass Embryonal Unknown Unknown No Prior Tx NA NA Unknown Unknown Unknown Unknown Unknown Yes TARGET-80-PPT052-60A WES resequenced B20 NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-SK-NEP-1-D-1.SNPFinalReports.txt PPTC-SK-NEP-1-D yes TARGET-41-PPT037-61A-01D-human.bam NA TARGET-41-PPT037-61A-01D-human.bam TARGET-41-PPT037-61A-01D-mouse.bam PPTC-SK-NEP-1-R-human.bam 6314d1fadb4e4737b10ba0e86e225d8b PPTC-SK-NEP-1-R-mouse.bam yes PPTC-SK-NEP-1-R.human.genes.fpkm_tracking TARGET-41-PPT037-61A-01D.PDX.bam PPTCSKNEP1-R-PDX.bam 5c579606bb40f44c658c3f0fbd659a57 TARGET-41-PPT037-61A-01D-human TARGET-41-PPT037-61A-01D TARGET-41-PPT037-61A-01R XG P0243 SK-NEP-1 Wilms tumor/confirmed Ewing sarcoma of kidney PPTCSKNEP1 41-PPTCSKNEP1 TARGET-41-PPT037 Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma NA ES Bone sarcoma Ewing Sarcoma bone sarcoma sarcoma ewing solid Houghton PPTC-SK-NEP-1 PPTC-SK-NEP-1-D PPTC-SK-NEP-1-R No Yes Yes No Yes Yes No Sarcoma Female Relapse Relapse Second 25 years 25 European European Kidney Pleural effusion met EWSR1-FLI1 translocation/transcript EWS/FLI-1 translocation Unknown Unknown Unknown Mutant Polymorphism @ 466 [C]. G to A transition @984 causing a Gly to Ser AA change @245 NA NA Unknown Unknown Unknown Unknown Unknown Yes originally diagnosed DA Wilms A6 NCH C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA
yes yes yes yes yes PPTC-TC-71-D-1.SNPFinalReports.txt PPTC-TC-71-D yes TARGET-41-PPT038-61A-01D-human.bam NA TARGET-41-PPT038-61A-01D-human.bam TARGET-41-PPT038-61A-01D-mouse.bam PPTC-TC-71-R-human.bam 324dd29079bd03a3fd4ff779800dfe7e PPTC-TC-71-R-mouse.bam yes PPTC-TC-71-R.human.genes.fpkm_tracking TARGET-41-PPT038-61A-01D.PDX.bam PPTCTC71-R-PDX.bam ea7981ad85cdbc2d03e51a07cb6ea625 TARGET-41-PPT038-61A-01D-human TARGET-41-PPT038-61A-01D TARGET-41-PPT038-61A-01R XG P0244 TC-71 Ewing Sarcoma PPTCTC71 41-PPTCTC71 TARGET-41-PPT038 Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma Ewing Sarcoma NA ES Bone sarcoma Ewing Sarcoma bone sarcoma sarcoma ewing solid Houghton PPTC-TC-71 PPTC-TC-71-D PPTC-TC-71-R No Yes Yes No Yes Yes No Sarcoma, In Vitro Male Relapse Relapse Second 22 years 22 Unknown European Humerus Humerus EWSR1-FLI1 translocation/transcript EWS/FLI-1 translocation Stage 4 Unknown Unknown NA NA Unknown Unknown Unknown Unknown Unknown Yes Recurrence at primary site B11, H7 NCH, UTHSC C.B-Igh-1b/IcrTac-Prkdcscid Taconic solid subcutaneous; left flank NA