diff --git a/2.evaluate-classifier-pdx.ipynb b/2.evaluate-classifier-pdx.ipynb
index ff17113..92d6679 100644
--- a/2.evaluate-classifier-pdx.ipynb
+++ b/2.evaluate-classifier-pdx.ipynb
@@ -252,8 +252,8 @@
        "ALK       18\n",
        "KRAS      16\n",
        "NF1       12\n",
-       "DMD       10\n",
        "NRAS      10\n",
+       "DMD       10\n",
        "CIC        8\n",
        "SOS1       7\n",
        "HRAS       4\n",
@@ -281,13 +281,13 @@
       "text/plain": [
        "Missense_Mutation    112\n",
        "Shallow_Del           17\n",
-       "Fusion                13\n",
        "Nonsense_Mutation     13\n",
+       "Fusion                13\n",
        "Frame_Shift_Del        5\n",
-       "Frame_Shift_Ins        3\n",
        "Splice_Site            3\n",
-       "Deep_Del               1\n",
+       "Frame_Shift_Ins        3\n",
        "In_Frame_Del           1\n",
+       "Deep_Del               1\n",
        "Name: Variant_Classification, dtype: int64"
       ]
      },
@@ -309,8 +309,8 @@
      "data": {
       "text/plain": [
        "Osteosarcoma                  45\n",
-       "BCP-ALL                       26\n",
        "Neuroblastoma                 26\n",
+       "BCP-ALL                       26\n",
        "Glioblastoma                  13\n",
        "Ewing Sarcoma                 12\n",
        "Ph-likeALL                     7\n",
@@ -318,15 +318,15 @@
        "MLL-ALL                        4\n",
        "Medulloblastoma                4\n",
        "Alveolar Rhabdomyosarcoma      4\n",
-       "Wilms                          4\n",
        "T-ALL                          4\n",
-       "Astrocytoma                    3\n",
+       "Wilms                          4\n",
        "ATRT                           3\n",
-       "ETP-ALL                        2\n",
+       "Astrocytoma                    3\n",
        "Other Sarcoma                  2\n",
+       "ETP-ALL                        2\n",
        "Colon Carcinoma                1\n",
-       "Small Cell Carcinoma           1\n",
        "Rhabdoid                       1\n",
+       "Small Cell Carcinoma           1\n",
        "Name: Histology.Detailed, dtype: int64"
       ]
      },
@@ -902,7 +902,155 @@
    "cell_type": "code",
    "execution_count": 12,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "data": {
+      "text/html": [
+       "<div>\n",
+       "<style scoped>\n",
+       "    .dataframe tbody tr th:only-of-type {\n",
+       "        vertical-align: middle;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe tbody tr th {\n",
+       "        vertical-align: top;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe thead th {\n",
+       "        text-align: right;\n",
+       "    }\n",
+       "</style>\n",
+       "<table border=\"1\" class=\"dataframe\">\n",
+       "  <thead>\n",
+       "    <tr style=\"text-align: right;\">\n",
+       "      <th></th>\n",
+       "      <th>Model</th>\n",
+       "      <th>ALK</th>\n",
+       "      <th>BRAF</th>\n",
+       "      <th>CIC</th>\n",
+       "      <th>DMD</th>\n",
+       "      <th>HRAS</th>\n",
+       "      <th>KRAS</th>\n",
+       "      <th>NF1</th>\n",
+       "      <th>NRAS</th>\n",
+       "      <th>PTPN11</th>\n",
+       "      <th>SOS1</th>\n",
+       "      <th>TP53</th>\n",
+       "      <th>Histology_Full</th>\n",
+       "      <th>ras_status</th>\n",
+       "    </tr>\n",
+       "  </thead>\n",
+       "  <tbody>\n",
+       "    <tr>\n",
+       "      <th>0</th>\n",
+       "      <td>ALL-03</td>\n",
+       "      <td>1</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>MLL-ALL</td>\n",
+       "      <td>1</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>1</th>\n",
+       "      <td>ALL-07</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>1</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>BCP-ALL</td>\n",
+       "      <td>1</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>2</th>\n",
+       "      <td>ALL-08</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>1</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>T-ALL</td>\n",
+       "      <td>1</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>3</th>\n",
+       "      <td>ALL-108</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>1</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>Ph-likeALL</td>\n",
+       "      <td>1</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>4</th>\n",
+       "      <td>ALL-115</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>0</td>\n",
+       "      <td>1</td>\n",
+       "      <td>BCP-ALL</td>\n",
+       "      <td>0</td>\n",
+       "    </tr>\n",
+       "  </tbody>\n",
+       "</table>\n",
+       "</div>"
+      ],
+      "text/plain": [
+       "     Model  ALK  BRAF  CIC  DMD  HRAS  KRAS  NF1  NRAS  PTPN11  SOS1  TP53  \\\n",
+       "0   ALL-03    1     0    0    0     0     0    0     0       0     0     0   \n",
+       "1   ALL-07    0     0    0    0     0     1    0     0       0     0     0   \n",
+       "2   ALL-08    0     0    0    1     0     0    0     0       0     0     0   \n",
+       "3  ALL-108    0     0    0    0     0     1    0     0       0     0     0   \n",
+       "4  ALL-115    0     0    0    0     0     0    0     0       0     0     1   \n",
+       "\n",
+       "  Histology_Full  ras_status  \n",
+       "0        MLL-ALL           1  \n",
+       "1        BCP-ALL           1  \n",
+       "2          T-ALL           1  \n",
+       "3     Ph-likeALL           1  \n",
+       "4        BCP-ALL           0  "
+      ]
+     },
+     "execution_count": 12,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
    "source": [
     "# Ras Pathway Alterations\n",
     "ras_genes = ['ALK', 'NF1', 'PTPN11', 'BRAF', 'CIC', 'KRAS', 'HRAS', 'NRAS', 'DMD', 'SOS1']\n",
@@ -911,7 +1059,9 @@
     "    full_status_df\n",
     "    .assign(ras_status = full_status_df.loc[:, ras_genes]\n",
     "            .max(axis='columns'))\n",
-    ")"
+    ")\n",
+    "\n",
+    "full_status_df.head()"
    ]
   },
   {
@@ -1103,22 +1253,22 @@
        "T-ALL                         19\n",
        "Ph-likeALL                    15\n",
        "Wilms                         13\n",
-       "Ewing Sarcoma                 10\n",
        "MLL-ALL                       10\n",
+       "Ewing Sarcoma                 10\n",
        "ATRT                           8\n",
+       "Alveolar Rhabdomyosarcoma      7\n",
        "Embryonal Rhabdomyosarcoma     7\n",
        "PNET                           7\n",
-       "Alveolar Rhabdomyosarcoma      7\n",
        "ETP-ALL                        6\n",
-       "Glioblastoma                   6\n",
        "Ependymoma                     6\n",
+       "Glioblastoma                   6\n",
        "Rhabdoid                       5\n",
-       "Other Sarcoma                  3\n",
        "Ph+-ALL                        3\n",
+       "Other Sarcoma                  3\n",
        "DIPG                           2\n",
+       "Astrocytoma                    2\n",
        "Small Cell Carcinoma           2\n",
        "Other Renal                    2\n",
-       "Astrocytoma                    2\n",
        "CNS germinoma                  1\n",
        "Colon Carcinoma                1\n",
        "Name: Histology-Detailed, dtype: int64"
@@ -1992,7 +2142,7 @@
     "scores_file = os.path.join(\"results\", \"classifier_scores_with_clinical_and_alterations.tsv\")\n",
     "genes = ras_genes + ['TP53']\n",
     "\n",
-    "scores_df.drop(['Model_x', 'Model_y', 'Histology_Full'], axis='columns')\n",
+    "scores_df = scores_df.drop(['Model_x', 'Model_y', 'Histology_Full'], axis='columns')\n",
     "scores_df[genes] = scores_df[genes].fillna(value=0)\n",
     "\n",
     "scores_df.sort_values(by='sample_id').to_csv(scores_file, sep='\\t', index=False)"
@@ -2020,9 +2170,9 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python [conda env:target-classification]",
+   "display_name": "Python [conda env:expression-classification]",
    "language": "python",
-   "name": "conda-env-target-classification-py"
+   "name": "conda-env-expression-classification-py"
   },
   "language_info": {
    "codemirror_mode": {
diff --git a/figures/NF1_confidence_scores.pdf b/figures/NF1_confidence_scores.pdf
index e6aba3e..959aa18 100644
Binary files a/figures/NF1_confidence_scores.pdf and b/figures/NF1_confidence_scores.pdf differ
diff --git a/figures/NF1_predictions.pdf b/figures/NF1_predictions.pdf
index 4a5f694..2edd832 100644
Binary files a/figures/NF1_predictions.pdf and b/figures/NF1_predictions.pdf differ
diff --git a/figures/Ras_confidence_scores.pdf b/figures/Ras_confidence_scores.pdf
index 5234b89..474fcd5 100644
Binary files a/figures/Ras_confidence_scores.pdf and b/figures/Ras_confidence_scores.pdf differ
diff --git a/figures/Ras_predictions.pdf b/figures/Ras_predictions.pdf
index 85ada02..be7cfc7 100644
Binary files a/figures/Ras_predictions.pdf and b/figures/Ras_predictions.pdf differ
diff --git a/figures/TP53_confidence_scores.pdf b/figures/TP53_confidence_scores.pdf
index c15833e..8684258 100644
Binary files a/figures/TP53_confidence_scores.pdf and b/figures/TP53_confidence_scores.pdf differ
diff --git a/figures/TP53_osteosarcoma_variant_classification.pdf b/figures/TP53_osteosarcoma_variant_classification.pdf
index 0c7e2b3..2f6cc39 100644
Binary files a/figures/TP53_osteosarcoma_variant_classification.pdf and b/figures/TP53_osteosarcoma_variant_classification.pdf differ
diff --git a/figures/TP53_predictions.pdf b/figures/TP53_predictions.pdf
index 8a66b99..eaf50ee 100644
Binary files a/figures/TP53_predictions.pdf and b/figures/TP53_predictions.pdf differ
diff --git a/figures/TP53_variant_classification.pdf b/figures/TP53_variant_classification.pdf
index 1ec3ff5..1117aa1 100644
Binary files a/figures/TP53_variant_classification.pdf and b/figures/TP53_variant_classification.pdf differ
diff --git a/figures/classifier_precision_recall_curve.pdf b/figures/classifier_precision_recall_curve.pdf
index 0c18d4d..8a72266 100644
Binary files a/figures/classifier_precision_recall_curve.pdf and b/figures/classifier_precision_recall_curve.pdf differ
diff --git a/figures/classifier_roc_curve.pdf b/figures/classifier_roc_curve.pdf
index 226cfc3..c8a7efb 100644
Binary files a/figures/classifier_roc_curve.pdf and b/figures/classifier_roc_curve.pdf differ
diff --git a/figures/histology_NF1_predictions.pdf b/figures/histology_NF1_predictions.pdf
index 180a5ce..cd5ffae 100644
Binary files a/figures/histology_NF1_predictions.pdf and b/figures/histology_NF1_predictions.pdf differ
diff --git a/figures/histology_Ras_predictions.pdf b/figures/histology_Ras_predictions.pdf
index 5051a3c..81d442a 100644
Binary files a/figures/histology_Ras_predictions.pdf and b/figures/histology_Ras_predictions.pdf differ
diff --git a/figures/histology_TP53_predictions.pdf b/figures/histology_TP53_predictions.pdf
index 027740e..322d72c 100644
Binary files a/figures/histology_TP53_predictions.pdf and b/figures/histology_TP53_predictions.pdf differ
diff --git a/html/2.evaluate-classifier-pdx.html b/html/2.evaluate-classifier-pdx.html
index dd21f81..4c31ec7 100644
--- a/html/2.evaluate-classifier-pdx.html
+++ b/html/2.evaluate-classifier-pdx.html
@@ -12061,12 +12061,12 @@ <h2 id="Load-Status-Matrix">Load Status Matrix<a class="anchor-link" href="#Load
 ALK       18
 KRAS      16
 NF1       12
-DMD       10
 NRAS      10
+DMD       10
 CIC        8
 SOS1       7
-PTPN11     4
 HRAS       4
+PTPN11     4
 BRAF       3
 Name: Hugo_Symbol, dtype: int64</pre>
 </div>
@@ -12103,13 +12103,13 @@ <h2 id="Load-Status-Matrix">Load Status Matrix<a class="anchor-link" href="#Load
 <div class="output_text output_subarea output_execute_result">
 <pre>Missense_Mutation    112
 Shallow_Del           17
-Nonsense_Mutation     13
 Fusion                13
+Nonsense_Mutation     13
 Frame_Shift_Del        5
 Splice_Site            3
 Frame_Shift_Ins        3
-In_Frame_Del           1
 Deep_Del               1
+In_Frame_Del           1
 Name: Variant_Classification, dtype: int64</pre>
 </div>
 
@@ -12150,18 +12150,18 @@ <h2 id="Load-Status-Matrix">Load Status Matrix<a class="anchor-link" href="#Load
 Ewing Sarcoma                 12
 Ph-likeALL                     7
 Embryonal Rhabdomyosarcoma     6
+MLL-ALL                        4
 Medulloblastoma                4
 Alveolar Rhabdomyosarcoma      4
-MLL-ALL                        4
-Wilms                          4
 T-ALL                          4
+Wilms                          4
 Astrocytoma                    3
 ATRT                           3
 ETP-ALL                        2
 Other Sarcoma                  2
-Colon Carcinoma                1
 Small Cell Carcinoma           1
 Rhabdoid                       1
+Colon Carcinoma                1
 Name: Histology.Detailed, dtype: int64</pre>
 </div>
 
@@ -12712,12 +12712,155 @@ <h2 id="Extract-Gene-Status">Extract Gene Status<a class="anchor-link" href="#Ex
     <span class="o">.</span><span class="n">assign</span><span class="p">(</span><span class="n">ras_status</span> <span class="o">=</span> <span class="n">full_status_df</span><span class="o">.</span><span class="n">loc</span><span class="p">[:,</span> <span class="n">ras_genes</span><span class="p">]</span>
             <span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="n">axis</span><span class="o">=</span><span class="s1">&#39;columns&#39;</span><span class="p">))</span>
 <span class="p">)</span>
+
+<span class="n">full_status_df</span><span class="o">.</span><span class="n">head</span><span class="p">()</span>
 </pre></div>
 
 </div>
 </div>
 </div>
 
+<div class="output_wrapper">
+<div class="output">
+
+
+<div class="output_area">
+
+<div class="prompt output_prompt">Out[12]:</div>
+
+
+
+<div class="output_html rendered_html output_subarea output_execute_result">
+<div>
+<style scoped>
+    .dataframe tbody tr th:only-of-type {
+        vertical-align: middle;
+    }
+
+    .dataframe tbody tr th {
+        vertical-align: top;
+    }
+
+    .dataframe thead th {
+        text-align: right;
+    }
+</style>
+<table border="1" class="dataframe">
+  <thead>
+    <tr style="text-align: right;">
+      <th></th>
+      <th>Model</th>
+      <th>ALK</th>
+      <th>BRAF</th>
+      <th>CIC</th>
+      <th>DMD</th>
+      <th>HRAS</th>
+      <th>KRAS</th>
+      <th>NF1</th>
+      <th>NRAS</th>
+      <th>PTPN11</th>
+      <th>SOS1</th>
+      <th>TP53</th>
+      <th>Histology_Full</th>
+      <th>ras_status</th>
+    </tr>
+  </thead>
+  <tbody>
+    <tr>
+      <th>0</th>
+      <td>ALL-03</td>
+      <td>1</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>MLL-ALL</td>
+      <td>1</td>
+    </tr>
+    <tr>
+      <th>1</th>
+      <td>ALL-07</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>1</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>BCP-ALL</td>
+      <td>1</td>
+    </tr>
+    <tr>
+      <th>2</th>
+      <td>ALL-08</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>1</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>T-ALL</td>
+      <td>1</td>
+    </tr>
+    <tr>
+      <th>3</th>
+      <td>ALL-108</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>1</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>Ph-likeALL</td>
+      <td>1</td>
+    </tr>
+    <tr>
+      <th>4</th>
+      <td>ALL-115</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>0</td>
+      <td>1</td>
+      <td>BCP-ALL</td>
+      <td>0</td>
+    </tr>
+  </tbody>
+</table>
+</div>
+</div>
+
+</div>
+
+</div>
+</div>
+
 </div>
 <div class="cell border-box-sizing text_cell rendered"><div class="prompt input_prompt">
 </div>
@@ -12917,21 +13060,21 @@ <h2 id="Load-Clinical-Data-Information">Load Clinical Data Information<a class="
 Ewing Sarcoma                 10
 MLL-ALL                       10
 ATRT                           8
-Alveolar Rhabdomyosarcoma      7
 PNET                           7
+Alveolar Rhabdomyosarcoma      7
 Embryonal Rhabdomyosarcoma     7
 ETP-ALL                        6
-Ependymoma                     6
 Glioblastoma                   6
+Ependymoma                     6
 Rhabdoid                       5
-Ph+-ALL                        3
 Other Sarcoma                  3
+Ph+-ALL                        3
+Astrocytoma                    2
+Small Cell Carcinoma           2
 Other Renal                    2
 DIPG                           2
-Small Cell Carcinoma           2
-Astrocytoma                    2
-CNS germinoma                  1
 Colon Carcinoma                1
+CNS germinoma                  1
 Name: Histology-Detailed, dtype: int64</pre>
 </div>
 
@@ -13967,7 +14110,7 @@ <h2 id="Write-output-files-for-downstream-analysis">Write output files for downs
 <span class="n">scores_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="s2">&quot;results&quot;</span><span class="p">,</span> <span class="s2">&quot;classifier_scores_with_clinical_and_alterations.tsv&quot;</span><span class="p">)</span>
 <span class="n">genes</span> <span class="o">=</span> <span class="n">ras_genes</span> <span class="o">+</span> <span class="p">[</span><span class="s1">&#39;TP53&#39;</span><span class="p">]</span>
 
-<span class="n">scores_df</span><span class="o">.</span><span class="n">drop</span><span class="p">([</span><span class="s1">&#39;Model_x&#39;</span><span class="p">,</span> <span class="s1">&#39;Model_y&#39;</span><span class="p">,</span> <span class="s1">&#39;Histology_Full&#39;</span><span class="p">],</span> <span class="n">axis</span><span class="o">=</span><span class="s1">&#39;columns&#39;</span><span class="p">)</span>
+<span class="n">scores_df</span> <span class="o">=</span> <span class="n">scores_df</span><span class="o">.</span><span class="n">drop</span><span class="p">([</span><span class="s1">&#39;Model_x&#39;</span><span class="p">,</span> <span class="s1">&#39;Model_y&#39;</span><span class="p">,</span> <span class="s1">&#39;Histology_Full&#39;</span><span class="p">],</span> <span class="n">axis</span><span class="o">=</span><span class="s1">&#39;columns&#39;</span><span class="p">)</span>
 <span class="n">scores_df</span><span class="p">[</span><span class="n">genes</span><span class="p">]</span> <span class="o">=</span> <span class="n">scores_df</span><span class="p">[</span><span class="n">genes</span><span class="p">]</span><span class="o">.</span><span class="n">fillna</span><span class="p">(</span><span class="n">value</span><span class="o">=</span><span class="mi">0</span><span class="p">)</span>
 
 <span class="n">scores_df</span><span class="o">.</span><span class="n">sort_values</span><span class="p">(</span><span class="n">by</span><span class="o">=</span><span class="s1">&#39;sample_id&#39;</span><span class="p">)</span><span class="o">.</span><span class="n">to_csv</span><span class="p">(</span><span class="n">scores_file</span><span class="p">,</span> <span class="n">sep</span><span class="o">=</span><span class="s1">&#39;</span><span class="se">\t</span><span class="s1">&#39;</span><span class="p">,</span> <span class="n">index</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
diff --git a/html/3.explore-variants.html b/html/3.explore-variants.html
index 169d076..c04bffb 100644
--- a/html/3.explore-variants.html
+++ b/html/3.explore-variants.html
@@ -12007,13 +12007,13 @@ <h2 id="Output">Output<a class="anchor-link" href="#Output">&#182;</a></h2><p>Th
       <th>RNA Part of PPTC</th>
       <th>Model Part of PPTC</th>
       <th>...</th>
+      <th>HRAS</th>
       <th>KRAS</th>
       <th>NF1</th>
       <th>NRAS</th>
       <th>PTPN11</th>
       <th>SOS1</th>
       <th>TP53</th>
-      <th>Histology_Full</th>
       <th>ras_status</th>
       <th>tp53_status</th>
       <th>nf1_status</th>
@@ -12039,7 +12039,7 @@ <h2 id="Output">Output<a class="anchor-link" href="#Output">&#182;</a></h2><p>Th
       <td>0.0</td>
       <td>0.0</td>
       <td>0.0</td>
-      <td>NaN</td>
+      <td>0.0</td>
       <td>0</td>
       <td>0</td>
       <td>0</td>
@@ -12063,14 +12063,14 @@ <h2 id="Output">Output<a class="anchor-link" href="#Output">&#182;</a></h2><p>Th
       <td>0.0</td>
       <td>0.0</td>
       <td>0.0</td>
-      <td>MLL-ALL</td>
+      <td>0.0</td>
       <td>1</td>
       <td>0</td>
       <td>0</td>
     </tr>
   </tbody>
 </table>
-<p>2 rows × 42 columns</p>
+<p>2 rows × 39 columns</p>
 </div>
 </div>
 
diff --git a/scripts/2.evaluate-classifier-pdx.py b/scripts/2.evaluate-classifier-pdx.py
index dee2f18..074a9e1 100644
--- a/scripts/2.evaluate-classifier-pdx.py
+++ b/scripts/2.evaluate-classifier-pdx.py
@@ -134,6 +134,8 @@
             .max(axis='columns'))
 )
 
+full_status_df.head()
+
 
 # ## Load Clinical Data Information
 # 
@@ -437,7 +439,7 @@
 scores_file = os.path.join("results", "classifier_scores_with_clinical_and_alterations.tsv")
 genes = ras_genes + ['TP53']
 
-scores_df.drop(['Model_x', 'Model_y', 'Histology_Full'], axis='columns')
+scores_df = scores_df.drop(['Model_x', 'Model_y', 'Histology_Full'], axis='columns')
 scores_df[genes] = scores_df[genes].fillna(value=0)
 
 scores_df.sort_values(by='sample_id').to_csv(scores_file, sep='\t', index=False)