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Feat: Multi-threads support in MACS2 #334

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Lee211 opened this issue Oct 27, 2019 · 2 comments
Open

Feat: Multi-threads support in MACS2 #334

Lee211 opened this issue Oct 27, 2019 · 2 comments

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@Lee211
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Lee211 commented Oct 27, 2019

Can i set multi-threads when using macs2? one thread is slow.

@taoliu taoliu self-assigned this Oct 28, 2019
@taoliu taoliu changed the title can i set multi-threads when using macs2? one thread is slow. Feat: Multi-threads support in MACS2 Oct 28, 2019
@taoliu
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taoliu commented Oct 28, 2019

Thanks for asking for the multi-thread support! Is it related to Python3 version MACS2? We also found the speed is much slower than the equivalent Python2.7 version. We will work on the speed optimization first, then implement the multi-threads support.

@taoliu
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taoliu commented Oct 31, 2019

@Lee211 Just released a speed tuned MACS2 v2.2.5, please let me know if the speed is acceptable. Now the running speed should be a bit faster than v2.1.4 and much faster than v2.2.4.

PS: Still working on multithreading

@taoliu taoliu added this to the MACS3-Optimization milestone Jun 29, 2020
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