From 28254b654177edf09e6601865b4fdd3713f13f46 Mon Sep 17 00:00:00 2001 From: Samuele Cancellieri <32717860+samuelecancellieri@users.noreply.github.com> Date: Fri, 4 Feb 2022 13:26:26 +0100 Subject: [PATCH] update to pkl files --- .gitattributes | 309 +++++++++++++++-------------- PostProcess/mismatch_score.pkl | 2 +- PostProcess/new_simple_analysis.py | 3 +- 3 files changed, 158 insertions(+), 156 deletions(-) diff --git a/.gitattributes b/.gitattributes index 10b297f..9b1fa07 100644 --- a/.gitattributes +++ b/.gitattributes @@ -12,177 +12,178 @@ ## Handle line endings automatically for files detected as ## text and leave all files detected as binary untouched. ## This will handle all files NOT defined below. -* text=auto +* text=auto # Source code -*.bash text eol=lf -*.bat text eol=crlf -*.cmd text eol=crlf -*.coffee text -*.css text diff=css -*.htm text diff=html -*.html text diff=html -*.inc text -*.ini text -*.js text -*.json text -*.jsx text -*.less text -*.ls text -*.map text -diff -*.od text -*.onlydata text -*.php text diff=php -*.pl text -*.ps1 text eol=crlf -*.py text eol=lf -*.rb text diff=ruby -*.sass text -*.scm text -*.scss text diff=css -*.sh text eol=lf -*.sql text -*.styl text -*.tag text -*.ts text -*.tsx text -*.xml text -*.xhtml text diff=html +*.pkl text eol=lf +*.bash text eol=lf +*.bat text eol=crlf +*.cmd text eol=crlf +*.coffee text +*.css text diff=css +*.htm text diff=html +*.html text diff=html +*.inc text +*.ini text +*.js text +*.json text +*.jsx text +*.less text +*.ls text +*.map text -diff +*.od text +*.onlydata text +*.php text diff=php +*.pl text +*.ps1 text eol=crlf +*.py text eol=lf +*.rb text diff=ruby +*.sass text +*.scm text +*.scss text diff=css +*.sh text eol=lf +*.sql text +*.styl text +*.tag text +*.ts text +*.tsx text +*.xml text +*.xhtml text diff=html # Docker -Dockerfile text +Dockerfile text # Documentation -*.ipynb text -*.markdown text diff=markdown -*.md text diff=markdown -*.mdwn text diff=markdown -*.mdown text diff=markdown -*.mkd text diff=markdown -*.mkdn text diff=markdown -*.mdtxt text -*.mdtext text -*.txt text -AUTHORS text -CHANGELOG text -CHANGES text -CONTRIBUTING text -COPYING text -copyright text -*COPYRIGHT* text -INSTALL text -license text -LICENSE text -NEWS text -readme text -*README* text -TODO text +*.ipynb text +*.markdown text diff=markdown +*.md text diff=markdown +*.mdwn text diff=markdown +*.mdown text diff=markdown +*.mkd text diff=markdown +*.mkdn text diff=markdown +*.mdtxt text +*.mdtext text +*.txt text +AUTHORS text +CHANGELOG text +CHANGES text +CONTRIBUTING text +COPYING text +copyright text +*COPYRIGHT* text +INSTALL text +license text +LICENSE text +NEWS text +readme text +*README* text +TODO text # Templates -*.dot text -*.ejs text -*.haml text -*.handlebars text -*.hbs text -*.hbt text -*.jade text -*.latte text -*.mustache text -*.njk text -*.phtml text -*.tmpl text -*.tpl text -*.twig text -*.vue text +*.dot text +*.ejs text +*.haml text +*.handlebars text +*.hbs text +*.hbt text +*.jade text +*.latte text +*.mustache text +*.njk text +*.phtml text +*.tmpl text +*.tpl text +*.twig text +*.vue text # Configs -*.cnf text -*.conf text -*.config text -.editorconfig text -.env text -.gitattributes text -.gitconfig text -.htaccess text -*.lock text -diff -package.json text eol=lf +*.cnf text +*.conf text +*.config text +.editorconfig text +.env text +.gitattributes text +.gitconfig text +.htaccess text +*.lock text -diff +package.json text eol=lf package-lock.json text -diff -pnpm-lock.yaml text eol=lf -diff -yarn.lock text -diff -*.toml text -*.yaml text -*.yml text -browserslist text -Makefile text -makefile text +pnpm-lock.yaml text eol=lf -diff +yarn.lock text -diff +*.toml text +*.yaml text +*.yml text +browserslist text +Makefile text +makefile text # Heroku -Procfile text +Procfile text # Graphics -*.ai binary -*.bmp binary -*.eps binary -*.gif binary -*.gifv binary -*.ico binary -*.jng binary -*.jp2 binary -*.jpg binary -*.jpeg binary -*.jpx binary -*.jxr binary -*.pdf binary -*.png binary -*.psb binary -*.psd binary +*.ai binary +*.bmp binary +*.eps binary +*.gif binary +*.gifv binary +*.ico binary +*.jng binary +*.jp2 binary +*.jpg binary +*.jpeg binary +*.jpx binary +*.jxr binary +*.pdf binary +*.png binary +*.psb binary +*.psd binary # SVG treated as an asset (binary) by default. -*.svg text +*.svg text # If you want to treat it as binary, # use the following line instead. # *.svg binary -*.svgz binary -*.tif binary -*.tiff binary -*.wbmp binary -*.webp binary +*.svgz binary +*.tif binary +*.tiff binary +*.wbmp binary +*.webp binary # Audio -*.kar binary -*.m4a binary -*.mid binary -*.midi binary -*.mp3 binary -*.ogg binary -*.ra binary +*.kar binary +*.m4a binary +*.mid binary +*.midi binary +*.mp3 binary +*.ogg binary +*.ra binary # Video -*.3gpp binary -*.3gp binary -*.as binary -*.asf binary -*.asx binary -*.fla binary -*.flv binary -*.m4v binary -*.mng binary -*.mov binary -*.mp4 binary -*.mpeg binary -*.mpg binary -*.ogv binary -*.swc binary -*.swf binary -*.webm binary +*.3gpp binary +*.3gp binary +*.as binary +*.asf binary +*.asx binary +*.fla binary +*.flv binary +*.m4v binary +*.mng binary +*.mov binary +*.mp4 binary +*.mpeg binary +*.mpg binary +*.ogv binary +*.swc binary +*.swf binary +*.webm binary # Archives -*.7z binary -*.gz binary -*.jar binary -*.rar binary -*.tar binary -*.zip binary +*.7z binary +*.gz binary +*.jar binary +*.rar binary +*.tar binary +*.zip binary # Fonts -*.ttf binary -*.eot binary -*.otf binary -*.woff binary -*.woff2 binary +*.ttf binary +*.eot binary +*.otf binary +*.woff binary +*.woff2 binary # Executables -*.exe binary -*.pyc binary +*.exe binary +*.pyc binary # RC files (like .babelrc or .eslintrc) -*.*rc text +*.*rc text # Ignore files (like .npmignore or .gitignore) -*.*ignore text +*.*ignore text PostProcess/CRISTA_predictors.pkl filter=lfs diff=lfs merge=lfs -text diff --git a/PostProcess/mismatch_score.pkl b/PostProcess/mismatch_score.pkl index a4559d8..69b85e2 100644 --- a/PostProcess/mismatch_score.pkl +++ b/PostProcess/mismatch_score.pkl @@ -1175,4 +1175,4 @@ F0.0634920634921 sS'rG:d-,20' p392 F0.09375 -s. \ No newline at end of file +s. diff --git a/PostProcess/new_simple_analysis.py b/PostProcess/new_simple_analysis.py index f1bda68..2bfc4d3 100644 --- a/PostProcess/new_simple_analysis.py +++ b/PostProcess/new_simple_analysis.py @@ -134,7 +134,8 @@ def revcom(s): def get_mm_pam_scores(): - # print(os.path.dirname(os.path.realpath(__file__))) + # print((os.path.dirname( + # os.path.realpath(__file__)))) try: mm_scores = pickle.load(open(os.path.dirname( os.path.realpath(__file__)) + '/mismatch_score.pkl', 'rb'))