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What's the rule defining BlockAttr and GenePartsSO? #19

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viktorxia opened this issue Dec 22, 2022 · 0 comments
Open

What's the rule defining BlockAttr and GenePartsSO? #19

viktorxia opened this issue Dec 22, 2022 · 0 comments

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@viktorxia
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Dear developer(s), in README two fields "BlockAttr" and "GenePartsSO" but I didn't find these formats in other databases. The GenePartSO I guess should be a concept similar to "Sequence Ontology" but they are different in format (SO terms looks like "SO:0001819"). For BlockAttr I just cannot figure out what is it. Could you explain more about how could they were defined and in what way can I update configurations by myself (such as update ncbi annotation database from 104 to 109) ?

 5'==|>>>>|[============]|>>>|>>>|[=========]|>>>|>>>|[============]|>>>>|==3'
 PROM 5U2E D5U1 I5U1 A5U1 5U1 C1  DC1 IC1 AC1 C2E 3U1 D3U1 I3U1 A3U1 3U2E
 167  204  163  447  164  204 316 163 191 164 316 205 163  448  164  205
 .   |EX1 |     IVS1     |  EX2  |   IVS2    |  EX3  |    IVS3      |EX4E|              
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