From dcf0a2a10a9f7ea5397d90ce8cce4f76479b650f Mon Sep 17 00:00:00 2001 From: Lee Katz - Aspen Date: Fri, 17 May 2024 09:42:06 -0400 Subject: [PATCH] updated unit tests --- .github/workflows/unit-testing.Listeria.Kraken1.yml | 2 +- .github/workflows/unit-testing.Yersinia.Kraken2.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/unit-testing.Listeria.Kraken1.yml b/.github/workflows/unit-testing.Listeria.Kraken1.yml index db23a48..e06f425 100644 --- a/.github/workflows/unit-testing.Listeria.Kraken1.yml +++ b/.github/workflows/unit-testing.Listeria.Kraken1.yml @@ -65,7 +65,7 @@ jobs: - name: download run: | perl Kalamari/bin/downloadKalamari.pl --outdir ${{ env.OUTDIR }} ${{ env.TSV }} - find ${{ env.OUTDIR }} -name '*.fasta' | xargs gunzip -v + find ${{ env.OUTDIR }} -name '*.fasta.gz' | xargs gunzip -v - name: check-results run: tree ${{ env.OUTDIR }} - name: install kraken diff --git a/.github/workflows/unit-testing.Yersinia.Kraken2.yml b/.github/workflows/unit-testing.Yersinia.Kraken2.yml index 7d5b666..0f7efde 100644 --- a/.github/workflows/unit-testing.Yersinia.Kraken2.yml +++ b/.github/workflows/unit-testing.Yersinia.Kraken2.yml @@ -47,7 +47,7 @@ jobs: - name: download run: | perl Kalamari/bin/downloadKalamari.pl --outdir ${{ matrix.GENUS }} ${{ env.TSV }} - find ${{ matrix.GENUS }} -name '*.fasta' | xargs gunzip -v + find ${{ matrix.GENUS }} -name '*.fasta.gz' | xargs gunzip -v - name: check-results run: | tree ${{ matrix.GENUS }}