diff --git a/paper/paper.bib b/paper/paper.bib index 5918ce6..694080b 100644 --- a/paper/paper.bib +++ b/paper/paper.bib @@ -138,3 +138,35 @@ @article{ondov2016mash year={2016}, publisher={Springer} } + +@article{nasko2018refseq, + title={RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification}, + author={Nasko, Daniel J and Koren, Sergey and Phillippy, Adam M and Treangen, Todd J}, + journal={Genome biology}, + volume={19}, + pages={1--10}, + year={2018}, + publisher={Springer} +} + +@article{o2016reference, + title={Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation}, + author={O'Leary, Nuala A and Wright, Mathew W and Brister, J Rodney and Ciufo, Stacy and Haddad, Diana and McVeigh, Rich and Rajput, Bhanu and Robbertse, Barbara and Smith-White, Brian and Ako-Adjei, Danso and others}, + journal={Nucleic acids research}, + volume={44}, + number={D1}, + pages={D733--D745}, + year={2016}, + publisher={Oxford University Press} +} + +@article{parks2022gtdb, + title={GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy}, + author={Parks, Donovan H and Chuvochina, Maria and Rinke, Christian and Mussig, Aaron J and Chaumeil, Pierre-Alain and Hugenholtz, Philip}, + journal={Nucleic acids research}, + volume={50}, + number={D1}, + pages={D785--D794}, + year={2022}, + publisher={Oxford University Press} +}