From afdff4e4043674f9be32a14571e0d746a9a044e9 Mon Sep 17 00:00:00 2001
From: Lee Katz - Aspen <gzu2@cdc.gov>
Date: Wed, 5 Jun 2024 14:47:49 -0400
Subject: [PATCH] update installation method for search with unit-testing

---
 .github/workflows/unit-testing.yml | 15 +++++----------
 1 file changed, 5 insertions(+), 10 deletions(-)

diff --git a/.github/workflows/unit-testing.yml b/.github/workflows/unit-testing.yml
index 7f3f800..e48046d 100644
--- a/.github/workflows/unit-testing.yml
+++ b/.github/workflows/unit-testing.yml
@@ -25,18 +25,13 @@ jobs:
 
       - name: apt-get install
         run:  sudo apt-get install ca-certificates tree
+        
       - name: install-edirect
         run:  |
-          sudo apt-get install ncbi-entrez-direct
-          echo "installed edirect the apt way"
-          exit
-          cd $HOME
-          perl -MNet::FTP -e '$ftp = new Net::FTP("ftp.ncbi.nlm.nih.gov", Passive => 1); $ftp->login; $ftp->binary; $ftp->get("/entrez/entrezdirect/edirect.tar.gz");'
-          gunzip -cv edirect.tar.gz | tar xf -
-          rm -v edirect.tar.gz
-          export PATH=${PATH}:$HOME/edirect >& /dev/null || setenv PATH "${PATH}:$HOME/edirect"
-          yes Y | ./edirect/setup.sh
-          tree edirect
+          sh -c "$(curl -fsSL https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/install-edirect.sh)"
+          echo $HOME/edirect >> $GITHUB_PATH
+          echo $GITHUB_WORKSPACE/Kalamari/bin >> $GITHUB_PATH
+          tree $HOME/edirect
       - name: check-env
         run:  echo "$PATH"
       - name: download