You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi,
I am attempting to assemble PE short-read data (2x150bp, FASTQ). However, I have some single reads too due to unaligned mates.
I understand that a first step is to convert my pair1.fq and pair2.fq into an interleaved reads.fa (i.e. reads in a pair are consecutive in the FASTA). But is there a possibility to include the single reads too? I am looking for something comparable to SPAdes' or Minia's -s option.
Any help/info appreciated. Thanks!
The text was updated successfully, but these errors were encountered:
I guess you could use the -l ("long_reads") option? But just out of curiosity...this assembler seems to be without updates/support since about 5 years. Why do you want to use it instead of e.g. Spades or Megahit(which at least don't require that cumbersome fastq to fasta conversion)?
Hi,
I am attempting to assemble PE short-read data (2x150bp, FASTQ). However, I have some single reads too due to unaligned mates.
I understand that a first step is to convert my pair1.fq and pair2.fq into an interleaved reads.fa (i.e. reads in a pair are consecutive in the FASTA). But is there a possibility to include the single reads too? I am looking for something comparable to SPAdes' or Minia's
-s
option.Any help/info appreciated. Thanks!
The text was updated successfully, but these errors were encountered: